View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21377_high_4 (Length: 314)

Name: NF21377_high_4
Description: NF21377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21377_high_4
NF21377_high_4
[»] scaffold0180 (1 HSPs)
scaffold0180 (14-308)||(15322-15615)
[»] chr3 (25 HSPs)
chr3 (15-308)||(4008022-4008315)
chr3 (15-308)||(42165244-42165536)
chr3 (15-308)||(3975787-3976080)
chr3 (15-304)||(596839-597128)
chr3 (85-308)||(3501591-3501816)
chr3 (65-308)||(50963085-50963328)
chr3 (65-308)||(50216577-50216822)
chr3 (51-308)||(51807085-51807343)
chr3 (104-308)||(44229885-44230087)
chr3 (85-307)||(47073907-47074131)
chr3 (104-308)||(42756323-42756527)
chr3 (104-308)||(49196146-49196350)
chr3 (55-308)||(30255701-30255955)
chr3 (66-308)||(20917716-20917957)
chr3 (66-308)||(20926678-20926919)
chr3 (104-308)||(48888906-48889117)
chr3 (104-286)||(48563112-48563295)
chr3 (53-128)||(2647816-2647891)
chr3 (200-253)||(42806008-42806061)
chr3 (212-286)||(31045314-31045388)
chr3 (66-140)||(42807498-42807572)
chr3 (59-128)||(34048953-34049022)
chr3 (59-128)||(46402255-46402324)
chr3 (59-128)||(49140978-49141047)
chr3 (60-128)||(54389676-54389744)
[»] chr8 (24 HSPs)
chr8 (15-308)||(43211587-43211879)
chr8 (67-308)||(45064374-45064615)
chr8 (65-308)||(41249772-41250015)
chr8 (65-308)||(39938915-39939158)
chr8 (67-308)||(15036427-15036668)
chr8 (66-308)||(34822716-34822961)
chr8 (65-308)||(39846685-39846931)
chr8 (104-308)||(40076949-40077153)
chr8 (66-308)||(43188181-43188423)
chr8 (104-308)||(25864639-25864842)
chr8 (81-308)||(39252156-39252385)
chr8 (65-308)||(42485237-42485479)
chr8 (65-308)||(489328-489570)
chr8 (65-192)||(39601834-39601961)
chr8 (204-308)||(39601985-39602089)
chr8 (104-192)||(35026657-35026745)
chr8 (202-269)||(2984390-2984457)
chr8 (65-167)||(5304010-5304112)
chr8 (218-308)||(5303920-5304010)
chr8 (210-302)||(24249759-24249851)
chr8 (210-291)||(37327080-37327160)
chr8 (231-275)||(35026740-35026784)
chr8 (122-267)||(45127937-45128082)
chr8 (59-128)||(486181-486250)
[»] chr2 (16 HSPs)
chr2 (15-308)||(39947680-39947974)
chr2 (65-308)||(28468772-28469015)
chr2 (124-308)||(17420757-17420941)
chr2 (67-291)||(21998323-21998547)
chr2 (22-306)||(45428678-45428963)
chr2 (65-308)||(45137131-45137374)
chr2 (66-308)||(25964944-25965194)
chr2 (65-308)||(7185159-7185403)
chr2 (104-308)||(32956053-32956258)
chr2 (65-186)||(42505582-42505703)
chr2 (59-128)||(3937983-3938052)
chr2 (59-128)||(17424005-17424074)
chr2 (210-267)||(25515549-25515606)
chr2 (59-128)||(43982072-43982141)
chr2 (213-275)||(31367308-31367370)
chr2 (213-297)||(35464314-35464398)
[»] chr7 (17 HSPs)
chr7 (21-308)||(10517077-10517354)
chr7 (65-308)||(34738495-34738740)
chr7 (51-308)||(27453318-27453576)
chr7 (65-308)||(17835208-17835450)
chr7 (104-307)||(39460698-39460901)
chr7 (51-308)||(47776449-47776708)
chr7 (104-308)||(47672784-47672988)
chr7 (74-308)||(36977736-36977972)
chr7 (65-308)||(37340435-37340678)
chr7 (104-308)||(9494494-9494709)
chr7 (65-308)||(15073927-15074169)
chr7 (65-308)||(42507726-42507968)
chr7 (54-128)||(15070595-15070669)
chr7 (86-128)||(42504692-42504734)
chr7 (60-128)||(9367848-9367916)
chr7 (212-267)||(41734441-41734496)
chr7 (104-190)||(17741274-17741360)
[»] chr4 (28 HSPs)
chr4 (65-308)||(40357979-40358222)
chr4 (65-308)||(50274865-50275108)
chr4 (81-308)||(21022587-21022814)
chr4 (66-308)||(55407486-55407732)
chr4 (65-308)||(51683332-51683576)
chr4 (104-308)||(67762-67965)
chr4 (74-308)||(48256270-48256505)
chr4 (110-308)||(50901657-50901854)
chr4 (65-296)||(1308825-1309055)
chr4 (65-308)||(30726440-30726682)
chr4 (65-296)||(1089295-1089525)
chr4 (81-190)||(8109540-8109649)
chr4 (203-308)||(37021782-37021887)
chr4 (104-308)||(21538161-21538364)
chr4 (104-310)||(11083713-11083918)
chr4 (131-310)||(10753134-10753312)
chr4 (131-310)||(10966903-10967081)
chr4 (210-310)||(46436521-46436620)
chr4 (53-134)||(40354692-40354775)
chr4 (210-308)||(14297401-14297499)
chr4 (210-308)||(14315650-14315748)
chr4 (104-267)||(41933363-41933524)
chr4 (59-128)||(6178241-6178310)
chr4 (59-128)||(41795487-41795556)
chr4 (59-128)||(49093957-49094026)
chr4 (212-275)||(4720100-4720163)
chr4 (81-136)||(37021933-37021988)
chr4 (159-192)||(37021903-37021936)
[»] chr1 (19 HSPs)
chr1 (65-308)||(29622123-29622366)
chr1 (79-308)||(52802275-52802505)
chr1 (51-308)||(47502431-47502689)
chr1 (65-269)||(22524258-22524461)
chr1 (65-308)||(35258572-35258814)
chr1 (18-165)||(2425528-2425674)
chr1 (104-308)||(23275803-23276011)
chr1 (74-307)||(51320854-51321087)
chr1 (74-286)||(11183318-11183533)
chr1 (142-308)||(19527242-19527408)
chr1 (65-308)||(30890193-30890435)
chr1 (104-308)||(45825057-45825250)
chr1 (152-308)||(31783427-31783587)
chr1 (157-269)||(2425113-2425224)
chr1 (65-178)||(19924888-19925001)
chr1 (202-286)||(11196148-11196232)
chr1 (53-128)||(13636252-13636327)
chr1 (65-136)||(31783587-31783658)
chr1 (212-267)||(38127223-38127278)
[»] chr5 (17 HSPs)
chr5 (65-308)||(7757455-7757698)
chr5 (67-308)||(8580204-8580445)
chr5 (15-308)||(14388-14681)
chr5 (65-307)||(28876774-28877016)
chr5 (104-308)||(19228371-19228575)
chr5 (65-308)||(512471-512714)
chr5 (111-310)||(42942183-42942383)
chr5 (104-308)||(38968265-38968471)
chr5 (108-308)||(42537317-42537523)
chr5 (65-308)||(28241498-28241740)
chr5 (104-308)||(8701923-8702126)
chr5 (210-310)||(40624621-40624720)
chr5 (53-128)||(28880202-28880277)
chr5 (205-308)||(20422210-20422313)
chr5 (53-134)||(30708778-30708859)
chr5 (104-308)||(17658493-17658696)
chr5 (59-128)||(19037601-19037670)
[»] scaffold0634 (1 HSPs)
scaffold0634 (67-308)||(7551-7792)
[»] scaffold0293 (1 HSPs)
scaffold0293 (104-308)||(427-625)
[»] scaffold0155 (1 HSPs)
scaffold0155 (104-308)||(8374-8577)
[»] chr6 (9 HSPs)
chr6 (104-308)||(24088481-24088687)
chr6 (111-308)||(31768877-31769079)
chr6 (202-308)||(6320262-6320368)
chr6 (65-164)||(6320371-6320470)
chr6 (53-128)||(22304976-22305051)
chr6 (53-124)||(27639455-27639526)
chr6 (59-128)||(6204700-6204769)
chr6 (59-128)||(11691667-11691736)
chr6 (213-297)||(30424144-30424228)
[»] scaffold0184 (1 HSPs)
scaffold0184 (51-191)||(18111-18251)
[»] scaffold0078 (1 HSPs)
scaffold0078 (51-191)||(54593-54733)
[»] scaffold0101 (2 HSPs)
scaffold0101 (65-296)||(40746-40976)
scaffold0101 (53-128)||(36664-36739)


Alignment Details
Target: scaffold0180 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 14 - 308
Target Start/End: Complemental strand, 15615 - 15322
Alignment:
Q  14 atgaactaaaccagaaagcagaaccagacttccccattttccaaaacttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaat 113  Q
    ||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15615 atgaactaaaccagaacacagaagcagacttccccattttccaaaacttcacaaaattcacaaattttctccaatcttcaccaaatcttctttcacgaat 15516  T
Q  114 tgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       | ||||||||||||    
T  15515 tgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgattttttaa-aaaaattagagt 15417  T
Q  214 agtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||  |||||||||    
T  15416 agtttgtatgtggttagggttgattttaaaattgacaatttgatgattgcatgtgtagtttagaaattgataaatgaatgtagttattgcctatg 15322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 4008315 - 4008022
Alignment:
Q  15 tgaactaaaccagaaagcagaaccagacttccccattttccaaaacttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaatt 114  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  4008315 tgaactaaaccagaacgcagaaccagacttcccgattttccaaaacttcacaaaattcacaaattttctccaatcttcaccaaatcttctttcacgaata 4008216  T
Q  115 gcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagta 214  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||       | |||||||||||||    
T  4008215 gcaagcaaatcaactgcacattatcacaagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgattttttaaaaaaaattagagta 4008116  T
Q  215 gtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    ||||| ||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| ||||||||| |||| ||||| ||||||||||    
T  4008115 gtttgtatgtggttagggttgattttaaaattgacaattcgatgattgcatgtgtagtttaggaattgataaatgaatgtagttgttgcctatg 4008022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 308
Target Start/End: Original strand, 42165244 - 42165536
Alignment:
Q  15 tgaactaaaccagaaagcagaaccagacttccccattttccaaaacttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaatt 114  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  42165244 tgaactaaaccagaacgcagaaccagacttccccattttccaaaacttcacaaaattcacaaattttctccaatcttcaccaaatattctttcacgaatt 42165343  T
Q  115 gcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagta 214  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||       | |||||||||||||    
T  42165344 gcaagcaaatcaactgcacattatcacaagtaagttgtgtccatcattttaatcataatgttaatttgtttaggttgatttttaaa-aaaaattagagta 42165442  T
Q  215 gtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||| |||| ||||| ||||||||||    
T  42165443 gtttgtatgtggttagggttgattttaaaattgacaatttgatgattgcatgtgtagtttaggaattgataaatgaatgtagttgttgcctatg 42165536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 308
Target Start/End: Original strand, 3975787 - 3976080
Alignment:
Q  15 tgaactaaaccagaaagcagaaccagacttccccattttccaaaacttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaatt 114  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3975787 tgaactaaaccagaacgcagaactagacttccccattttccaaaacttcacaaaattcacaaattttctccaatcttcaccaaatcttctttcacgaatt 3975886  T
Q  115 gcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagta 214  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||       | |||||||||||||    
T  3975887 gcaagcaaatcaagtgcacattatcacaagtaagttgtgtcaatcattttaatgttaatgttaatttgtttaggttgatttttttaaaaaaattagagta 3975986  T
Q  215 gtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    ||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||  ||||||| ||||| ||||||||||    
T  3975987 gtttgtatgtggttagggttgatttaaaaattgacaatttgatgattgcatgtgtagtttagaaattggcaattgaatgtagttgttgcctatg 3976080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 596839 - 597128
Alignment:
Q  15 tgaactaaaccagaaagcagaaccaga-cttccccattttccaaaacttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaat 113  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||   ||||||||||    
T  596839 tgaactaaaccagaacgcagaaccagaacttccccattttccaaaacttcacaaaattcacaatttttctccaatcttcaccaaatccattttcacgaat 596938  T
Q  114 tgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagt 213  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||    
T  596939 tgcaagcaaatcaattgcacattatcacaagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgattttttt-tttaaattagagt 597037  T
Q  214 agtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcc 304  Q
    |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| ||||||||| |||| ||||| ||||||    
T  597038 agtttgcatgtggttagggttgatttaaatattgacaatttgatgattgcatgtgtagtttaggaattgataaatgaatgtagttgttgcc 597128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 85 - 308
Target Start/End: Complemental strand, 3501816 - 3501591
Alignment:
Q  85 caatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtt 184  Q
    |||||||||||| |||   |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||  |||||||||||||||    
T  3501816 caatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcacattatcacaagtaagttgtgtcaatcattttaatgttaatgttaatttgtt 3501717  T
Q  185 taggttgannnnnnnagaaaaa--ttagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattg 282  Q
    ||||||||       | |||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3501716 taggttgatttttaaaaaaaaaaattagagtagtttgtatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattg 3501617  T
Q  283 ataattgaaggtagtggttgcctatg 308  Q
    ||||||||| ||||| ||||||||||    
T  3501616 ataattgaatgtagttgttgcctatg 3501591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 65 - 308
Target Start/End: Original strand, 50963085 - 50963328
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||| ||| || |||||||||||||||| |||   |||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||    
T  50963085 caaaattctcaatttctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgtacattatcacaagtaagttgtgtcaatcatttt 50963184  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    |||  |||||||||||||||||||||||       | |||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||    
T  50963185 aatgttaatgttaatttgtttaggttgatttttttaaaaaaattagagtagtttgtatgtggttagggttgattttaaaattgacaatttgatgattgca 50963284  T
Q  265 tgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||||||| ||||||||| |||| ||||| ||||||||||    
T  50963285 tgtgtagtttaggaattgataaatgaatgtagttgttgcctatg 50963328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 65 - 308
Target Start/End: Complemental strand, 50216822 - 50216577
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||||||| || |||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  50216822 caaaattcacaatttctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaactgcacattatcacaagtaagttgtgtcaatcatttt 50216723  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnna--gaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattg 262  Q
    ||| ||||||| ||||||||||||||||       |     |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  50216722 aatgataatgtaaatttgtttaggttgatttttttatttttaaattagagtagtttgcatgtggttagggttgattttaaaattgataatttgatgattg 50216623  T
Q  263 catgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||| ||||| ||||||||| |||| ||||| ||||||||||    
T  50216622 catgtgtaatttaggaattgataaatgaatgtagttgttgcctatg 50216577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 51 - 308
Target Start/End: Original strand, 51807085 - 51807343
Alignment:
Q  51 tttccaaaacttcac-aaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagt 149  Q
    ||||||||||||| | ||||||||||| || |||||||||||||||| |  |  |||||| |||||||||||||||||||| ||||||||| ||||||||    
T  51807085 tttccaaaacttctccaaaattcacaatttctctccaatcttcaccaaagttattttcacaaattgcaagcaaatcaactgtacattatcacaagtaagt 51807184  T
Q  150 tgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgag 249  Q
    ||| |||||||||||||| ||||||| | |||||||||||| |       | |||||||||||||||||||||||||||| | ||||||| ||||||||     
T  51807185 tgtatcaatcattttaatgataatgtcagtttgtttaggtttatttttaaaaaaaaattagagtagtttgcatgtggttatgattgattttaaaattgac 51807284  T
Q  250 aatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||| |||| |||||    
T  51807285 aatttgatgattgcatgtgtagtttagaaattgataaatgaatgtagttgttgtctatg 51807343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 104 - 308
Target Start/End: Original strand, 44229885 - 44230087
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaa 203  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||||| |       | ||    
T  44229885 tttcacgaattgcaagcaaatcaattgcacattatcacaagtaagttgtatcaatcattttaatgataatgttagtttgtttaggtttatttaa--aaaa 44229982  T
Q  204 aaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgc 303  Q
    |||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||| |||| ||||| |||||    
T  44229983 aaatcagagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgattgcatgtgtagtttaggaattgataaatgaatgtagttgttgc 44230082  T
Q  304 ctatg 308  Q
    |||||    
T  44230083 ctatg 44230087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 85 - 307
Target Start/End: Complemental strand, 47074131 - 47073907
Alignment:
Q  85 caatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtt 184  Q
    |||||||||||| |||   |||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  47074131 caatcttcaccaaatccattttcacgaatagcaagcaaatcaaccgcacattatcacaagtaagttgtgtcaatcattttaatgataatgttaatttgtt 47074032  T
Q  185 taggttgannnnnnnagaaa--aattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattg 282  Q
    ||||||||       | |||  || |||||||||||| ||||||||||||||||||| |||||||| |||||||||| |||||||||||||||| |||||    
T  47074031 taggttgatttttaaaaaaaataaatagagtagtttgtatgtggttagggttgattttaaaattgacaatttgatgaatgcatgtgtagtttaggaattg 47073932  T
Q  283 ataattgaaggtagtggttgcctat 307  Q
    |||| |||| ||||| |||||||||    
T  47073931 ataaatgaatgtagttgttgcctat 47073907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 104 - 308
Target Start/End: Original strand, 42756323 - 42756527
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaa 203  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||| ||||||||| |||||||||||| |       | ||    
T  42756323 tttcacgaattgcaagcaaatcaactgcacattatcacaagtcagttgtatcaatcattttaataataatgttagtttgtttaggtttatttttaaaaaa 42756422  T
Q  204 aaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgc 303  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||  ||||||||| || | ||||| ||||     
T  42756423 aaattagagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgattgcatgtgtagtttatgaattgataaatggatgtagttgttgt 42756522  T
Q  304 ctatg 308  Q
    |||||    
T  42756523 ctatg 42756527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 104 - 308
Target Start/End: Complemental strand, 49196350 - 49196146
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaa 203  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| |||||| ||||||||| |||||||||||| |       | ||    
T  49196350 tttcacgaattgcaagaaaatcaactgcacattatcacaagtaagttgtatcaatcactttaatgataatgttagtttgtttaggtttatttttaaaaaa 49196251  T
Q  204 aaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgc 303  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||  ||||||||| |||| ||||| |||||    
T  49196250 aaattagagtagtttgcatgtggttaaggttgattttaaaattgacaatttgatgattgcatgtgtagtttatgaattgataaatgaatgtagttgttgc 49196151  T
Q  304 ctatg 308  Q
    |||||    
T  49196150 ctatg 49196146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 55 - 308
Target Start/End: Complemental strand, 30255955 - 30255701
Alignment:
Q  55 caaaacttcacaaaa-ttcacaaattttctccaatcttcaccata-tcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgt 152  Q
    ||||||||| ||||| ||| |||||| | |||||||||||||| | || | ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30255955 caaaacttctcaaaacttctcaaattctttccaatcttcaccaaagtcat-tttcacgaattgcaagcaaatcaactgcacattatcacaagtaagttgt 30255857  T
Q  153 gtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaat 252  Q
     |||||||||||||| |||| |||| |||||||||||| |       | |||||||||||||||||||||||||||||||||||||| ||| |||| |||    
T  30255856 atcaatcattttaatgataaggttagtttgtttaggtttatttttaaaaaaaaattagagtagtttgcatgtggttagggttgattttaaagttgacaat 30255757  T
Q  253 ttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    ||||||||||||||| ||||||   ||||| ||| |||| ||||| ||||||||||    
T  30255756 ttgatgattgcatgtttagtttgtgaattgctaaatgaatgtagttgttgcctatg 30255701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 66 - 308
Target Start/End: Complemental strand, 20917957 - 20917716
Alignment:
Q  66 aaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttta 165  Q
    ||||||| ||| || |||||||||||||||| | |   ||||||||||||||||||||||||  ||||||||||| ||||||||||| |||||||| |||    
T  20917957 aaaattctcaatttctctccaatcttcaccaaagccattttcacgaattgcaagcaaatcaatcgcacattatcacaagtaagttgtatcaatcatctta 20917858  T
Q  166 atcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcat 265  Q
    || ||| ||||| |||||||||||| |       | |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  20917857 atgata-tgttagtttgtttaggtttattttttaaaaaaaattagagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgattgcat 20917759  T
Q  266 gtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    || |||||||  ||||||||| |||| ||||| ||||||||||    
T  20917758 gtatagtttatgaattgataaatgaatgtagttgttgcctatg 20917716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 66 - 308
Target Start/End: Complemental strand, 20926919 - 20926678
Alignment:
Q  66 aaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttta 165  Q
    ||||||| ||| || |||||||||||||||| | |   ||||||||||||||||||||||||  ||||||||||| ||||||||||| |||||||| |||    
T  20926919 aaaattctcaatttctctccaatcttcaccaaagccattttcacgaattgcaagcaaatcaatcgcacattatcacaagtaagttgtatcaatcatctta 20926820  T
Q  166 atcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcat 265  Q
    || ||| ||||| |||||||||||| |       | |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  20926819 atgata-tgttagtttgtttaggtttattttttaaaaaaaattagagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgattgcat 20926721  T
Q  266 gtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    || |||||||  ||||||||| |||| ||||| ||||||||||    
T  20926720 gtatagtttatgaattgataaatgaatgtagttgttgcctatg 20926678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 104 - 308
Target Start/End: Original strand, 48888906 - 48889117
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaa 203  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| |||||||| ||| |       | ||    
T  48888906 tttcacgaattgcaagcaaatcaactgcacattatcacaagtaagttgtatcaatcattttaatgataatgttagtttgtttaagtttatttaaaaataa 48889005  T
Q  204 aa-------attagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtag 296  Q
    ||       |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||  ||||||||| |||| ||||    
T  48889006 aaataaaaaattagagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgattgcatgtgtagtttatgaattgataaatgaatgtag 48889105  T
Q  297 tggttgcctatg 308  Q
    | ||||||||||    
T  48889106 ttgttgcctatg 48889117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 104 - 286
Target Start/End: Original strand, 48563112 - 48563295
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttga-nnnnnnnaga 202  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||| |        | |    
T  48563112 tttcacaaattgcaagcaaatcaactgcacattatcataagtaagttgtatcaatcattttaatgataatgttagtttgtttaggtttattttaaaaaaa 48563211  T
Q  203 aaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataa 286  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||| ||  |||||||||    
T  48563212 aaaattagagtagtttgcatgtggttaaggttgattttaaaattgacaatttgatgattgcatgtgtagtctatgaattgataa 48563295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 2647816 - 2647891
Alignment:
Q  53 tccaaaacttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaac 128  Q
    |||||||||||||||||||| ||| || |||||||||||| ||| |||||||||||||||||||||||||||||||    
T  2647816 tccaaaacttcacaaaattctcaatttctctccaatcttcgccaaatcttctttcacgaattgcaagcaaatcaac 2647891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 200 - 253
Target Start/End: Complemental strand, 42806061 - 42806008
Alignment:
Q  200 agaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatt 253  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||| ||||    
T  42806061 agaaaaattagagtagtttgtatgtggttagggttgattttaaaattgataatt 42806008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 31045388 - 31045314
Alignment:
Q  212 gtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataa 286  Q
    ||||||||||||||||||||||| ||     |||||| | |||||||||||||||||||||||| ||||||||||    
T  31045388 gtagtttgcatgtggttagggtttatgaatgaattgacattttgatgattgcatgtgtagtttataaattgataa 31045314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 140
Target Start/End: Complemental strand, 42807572 - 42807498
Alignment:
Q  66 aaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatca 140  Q
    ||||||| ||| || |||||||||||||||| | |   |||||| |||||||||||||||||| |||||||||||    
T  42807572 aaaattctcaatttctctccaatcttcaccaaagccattttcacaaattgcaagcaaatcaaccgcacattatca 42807498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 34049022 - 34048953
Alignment:
Q  59 acttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaac 128  Q
    |||||||||| ||| ||| || |||| ||||||| |||  |||||||||||||||||| |||||||||||    
T  34049022 acttcacaaagttctcaagttctctcaaatcttcgccaattcttctttcacgaattgcgagcaaatcaac 34048953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 46402324 - 46402255
Alignment:
Q  59 acttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaac 128  Q
    |||||||||| ||| ||| || |||| ||||||| |||  |||||||||||||||||| |||||||||||    
T  46402324 acttcacaaagttctcaagttctctcaaatcttcgccaattcttctttcacgaattgcgagcaaatcaac 46402255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 49140978 - 49141047
Alignment:
Q  59 acttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaac 128  Q
    |||||||||| ||| ||| || |||| ||||||| |||  |||||||||||||||||| |||||||||||    
T  49140978 acttcacaaagttctcaagttctctcaaatcttcgccaattcttctttcacgaattgcgagcaaatcaac 49141047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 54389744 - 54389676
Alignment:
Q  60 cttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaac 128  Q
    ||||||||| ||| ||| || |||| ||||||| |||  |||||||||||||||||| |||||||||||    
T  54389744 cttcacaaagttctcaagttctctcaaatcttcgccaattcttctttcacgaattgcgagcaaatcaac 54389676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 15 - 308
Target Start/End: Original strand, 43211587 - 43211879
Alignment:
Q  15 tgaactaaaccagaaagcagaaccagacttccccattttccaaaacttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaatt 114  Q
    ||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43211587 tgaactaaaccagaacgtagaaccagacttccccatttttcaaaacttcacaaaattcacaaattttctccaatcttcaccaaatcttctttcacgaatt 43211686  T
Q  115 gcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagta 214  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||       | |||||||||||||    
T  43211687 gcaagcaaatcaactgcacattaccacaagtaagttgtgtcaatcattttaatcataatgttaatttgttttggttgattttttta-aaaaattagagta 43211785  T
Q  215 gtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    ||||| ||||| ||||||||||||| |||||||| |||| |||||||||||||||||||||| ||||||||| |||| ||||| ||||||||||    
T  43211786 gtttgtatgtgcttagggttgattttaaaattgacaattcgatgattgcatgtgtagtttaggaattgataaatgaatgtagttgttgcctatg 43211879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 67 - 308
Target Start/End: Original strand, 45064374 - 45064615
Alignment:
Q  67 aaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaa 166  Q
    |||||| ||| || |||||||||||||||| |||   |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  45064374 aaattctcaatttctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcacattatcacaagtaagttgtgtcaatcattttaa 45064473  T
Q  167 tcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatg 266  Q
    |  |||||||||||||||||||||||       | |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  45064474 tgttaatgttaatttgtttaggttgatttttttaaaaaaattagagtagtttgtatgtggttagggttgatttcaaaattgacaatttgatgattgcatg 45064573  T
Q  267 tgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    ||||||||||||||||||||||||| ||||| ||||||||||    
T  45064574 tgtagtttagaaattgataattgaatgtagttgttgcctatg 45064615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 65 - 308
Target Start/End: Complemental strand, 41250015 - 41249772
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||||||| || |||||||||||||||| |||   |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  41250015 caaaattcacaatttctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcacattatcacaagtaagttgtgtcaatcatttt 41249916  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    ||| ||||||||||||||||||||||||         |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||    
T  41249915 aatgataatgttaatttgtttaggttgatttttttttaaaaattagagtagtttgcatgtggttagggtagattttaaaattgacaatttgatgattgca 41249816  T
Q  265 tgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||||||| ||||||||| |||| ||||| ||||||||||    
T  41249815 tgtgtagtttaggaattgataaatgaatgtagttgttgcctatg 41249772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 65 - 308
Target Start/End: Complemental strand, 39939158 - 39938915
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||| ||| || ||||||||||||||||  ||   |||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||    
T  39939158 caaaattctcaatttctctccaatcttcaccaagtccattttcacgaattgaaagcaaatcaattgcacattatcacaagtaagttgtgtcaatcatttt 39939059  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    ||| ||||||||||||||||||||||||       | ||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||| ||    
T  39939058 aatgataatgttaatttgtttaggttgattttttaaaaaaaattagagtagtttacatgtggttagggttgattttaaaattgataatttgatgattaca 39938959  T
Q  265 tgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    ||| |||||||| ||||||||| |||| ||||| ||||||||||    
T  39938958 tgtatagtttaggaattgataaatgaatgtagttgttgcctatg 39938915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 67 - 308
Target Start/End: Complemental strand, 15036668 - 15036427
Alignment:
Q  67 aaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaa 166  Q
    |||||| ||| || |||||||||||||||| |||   |||| ||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||    
T  15036668 aaattctcaatttctctccaatcttcaccaaatccattttcgcgaattgcaagcaaatcaagtgcacattatcacaaataagttgtgtcaatcattttaa 15036569  T
Q  167 tcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatg 266  Q
    |  ||||||||||||||||||||| |       | |||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  15036568 tgttaatgttaatttgtttaggtttatttttttaaaaaaattagagtggtttgtatgtggttagggttgatttcaaaattgacaatttgatgattgcatg 15036469  T
Q  267 tgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    ||||||| || ||||||||| |||| ||||| ||||||||||    
T  15036468 tgtagttcaggaattgataaatgaatgtagttgttgcctatg 15036427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 66 - 308
Target Start/End: Complemental strand, 34822961 - 34822716
Alignment:
Q  66 aaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagta--agttgtgtcaatcattt 163  Q
    ||||||| ||| || |||||||||||||||| | ||| ||||||||||||||||||||| ||||||||||||||| |||||  |||||| ||||||||||    
T  34822961 aaaattctcaatttctctccaatcttcaccaaaacttttttcacgaattgcaagcaaattaactgcacattatcacaagtataagttgtatcaatcattt 34822862  T
Q  164 taatcataatgttaatttgtttaggttgannnnnnnagaaaaa-ttagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattg 262  Q
    |||| ||||||||| |||||||||||| |       | ||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  34822861 taatgataatgttagtttgtttaggtttattttttaaaaaaaaattagagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgattg 34822762  T
Q  263 catgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||||||||  ||||||||| |||| ||||| ||||||||||    
T  34822761 catgtgtagtttatgaattgataaatgaatgtagttgttgcctatg 34822716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 65 - 308
Target Start/End: Complemental strand, 39846931 - 39846685
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||||||| || |||||||||||||||| | |   |||||| ||||||||||||| ||| |||||||||||| ||||||||||| |||||||||||    
T  39846931 caaaattcacaatttctctccaatcttcaccaaagccattttcacaaattgcaagcaaaccaattgcacattatcacaagtaagttgtatcaatcatttt 39846832  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnn---agaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgatt 261  Q
    ||| ||||||||| |||||||||||| |          | ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  39846831 aatgataatgttagtttgtttaggtttattttttataaaaaaaaaatagagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgatt 39846732  T
Q  262 gcatgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    ||||||||||||||| ||||||||| |||| ||||| ||||||||||    
T  39846731 gcatgtgtagtttaggaattgataaatgaatgtagttgttgcctatg 39846685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 104 - 308
Target Start/End: Complemental strand, 40077153 - 40076949
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaa 203  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||||| |       | ||    
T  40077153 tttcacgaattgcaagcaaatcaagtgcacattatcagaagtaagttgtatcaatcattttaatgataatgttagtttgtttaggtttattttttaaaaa 40077054  T
Q  204 aaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgc 303  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||  ||||||||||||  ||||||||| |||| ||||  |||||    
T  40077053 aaattagagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgattatatgtgtagtttatgaattgataaatgaatgtagctgttgc 40076954  T
Q  304 ctatg 308  Q
    |||||    
T  40076953 ctatg 40076949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 66 - 308
Target Start/End: Original strand, 43188181 - 43188423
Alignment:
Q  66 aaaattcacaaattttctccaatcttcaccata-tcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    ||||||| ||| || |||||||||||||||| | || | ||||| ||||||||||||||||||||||| ||| ||| ||||||||||| |||||||||||    
T  43188181 aaaattctcaatttctctccaatcttcaccaaagtcat-tttcaagaattgcaagcaaatcaactgcatattgtcacaagtaagttgtatcaatcatttt 43188279  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    ||| ||||||||| |||||||||||| |       | |||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||    
T  43188280 aatgataatgttagtttgtttaggtttatttttaaaaaaaaattagagtagtttgcatgtggttatggttgattttaaaattgacaatttgatgattgca 43188379  T
Q  265 tgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||||||| |||| |||| |||| ||||| |||| |||||    
T  43188380 tgtgtagtttaggaattaataaatgaatgtagttgttgtctatg 43188423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 104 - 308
Target Start/End: Complemental strand, 25864842 - 25864639
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaa 203  Q
    ||||||||||||||| |||||||||| |||||||||| ||||||||||| | |||||||||||| ||||||||| |||||||||||| |       | ||    
T  25864842 tttcacgaattgcaatcaaatcaactacacattatcacaagtaagttgtattaatcattttaatgataatgttagtttgtttaggtttatttttaaaaaa 25864743  T
Q  204 aaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgc 303  Q
    | |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||  ||||||||| |||| ||||| |||||    
T  25864742 atattagagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgattgcatgtgtag-ttatgaattgataaatgaatgtagttgttgc 25864644  T
Q  304 ctatg 308  Q
    |||||    
T  25864643 ctatg 25864639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 81 - 308
Target Start/End: Original strand, 39252156 - 39252385
Alignment:
Q  81 tctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatt 180  Q
    |||||||||||||||| ||    |||||||||||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||  |||||||||||    
T  39252156 tctccaatcttcaccaaattcattttcacgaattgcaagcaaatcaagtgcgcgttatcacaagtaagttgtgtcaatcattttaatgttaatgttaatt 39252255  T
Q  181 tgtttaggttga---nnnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttaga 277  Q
    ||||||||||||          | |||||||||||||||||| ||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||     
T  39252256 tgtttaggttgatttttaaaaaaaaaaaattagagtagtttgtatgtggtta-ggttgattttaaaattgacaatttgatgattgcatgtgtagtttagg 39252354  T
Q  278 aattgataattgaaggtagtggttgcctatg 308  Q
    |||| |||| |||| ||||| ||||| ||||    
T  39252355 aattaataaatgaatgtagttgttgcatatg 39252385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 65 - 308
Target Start/End: Complemental strand, 42485479 - 42485237
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||| |||||| |||||||||||||||| |||   |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  42485479 caaaattctcaaattctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcacattatcacaagtaagttgtgtcaatcatttt 42485380  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    |||  ||||||||||||||||| ||| |       | ||||||| |||||||||||||||||||||| || ||     |||||| ||||| || ||||||    
T  42485379 aatgttaatgttaatttgtttatgttaagttttttaaaaaaatt-gagtagtttgcatgtggttaggttttataaatgaattgacaatttcatcattgca 42485281  T
Q  265 tgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||||||   |||||||| |||| ||||  ||||||||||    
T  42485280 tgtgtagtttatgtattgataaatgaatgtagatgttgcctatg 42485237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 65 - 308
Target Start/End: Complemental strand, 489570 - 489328
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||  |||||| ||||| |||||||||| |||   |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  489570 caaaattttcaaattctctccgatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcacattatcacaagtaagttgtgtcaatcatttt 489471  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    |||  ||||||||||||||||| ||| |       | ||||||| |||||||||||||||||||||| || |      |||||| ||||| || ||||||    
T  489470 aatgttaatgttaatttgtttatgttaaatttttaaaaaaaatt-gagtagtttgcatgtggttaggttttacaaatgaattgacaatttcatcattgca 489372  T
Q  265 tgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||||||   |||||||| |||| ||||  ||||||||||    
T  489371 tgtgtagtttatgtattgataaatgaatgtagatgttgcctatg 489328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 65 - 192
Target Start/End: Original strand, 39601834 - 39601961
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||| ||| || |||||||||||| ||| ||    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39601834 caaaattctcaatttctctccaatcttcgccaaattcattttcacgaattgcaagcaaatcaactgcacattatcacaagtaagttgtgtcaatcatttt 39601933  T
Q  165 aatcataatgttaatttgtttaggttga 192  Q
    |||  |||||||||||||||||||||||    
T  39601934 aatgttaatgttaatttgtttaggttga 39601961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 204 - 308
Target Start/End: Original strand, 39601985 - 39602089
Alignment:
Q  204 aaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgc 303  Q
    |||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||| |||| ||||| |||||    
T  39601985 aaattagagtagtttgtatgtggttagggttgattttaaaattgacaatttgatgattgcatgtgtagtttaggaattgataaatgaatgtagttgttgc 39602084  T
Q  304 ctatg 308  Q
    |||||    
T  39602085 ctatg 39602089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 104 - 192
Target Start/End: Original strand, 35026657 - 35026745
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttga 192  Q
    ||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35026657 tttcacgaattgcaagcaaattaactacacattatcacaagtaagttgtgtcaatcattttaatgataatgttaatttgtttaggttga 35026745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 2984390 - 2984457
Alignment:
Q  202 aaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgt 269  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  2984390 aaaaattagagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgattgcatgtgt 2984457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 65 - 167
Target Start/End: Complemental strand, 5304112 - 5304010
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||| ||| |||||| | |||||||||||||| | |   ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  5304112 caaacttctcaaattctttccaatcttcaccaaagccattttcacgaattgcaagcaaatcaactgcacattatcacaagtaagttgtatcaatcatttt 5304013  T
Q  165 aat 167  Q
    |||    
T  5304012 aat 5304010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 218 - 308
Target Start/End: Complemental strand, 5304010 - 5303920
Alignment:
Q  218 tgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||  ||||||||| |||| ||||| |||| |||||    
T  5304010 tgcatgtggttagggttgattttaaaattgacaatttcatgattgcatgtgtagtttatgaattgataaatgaatgtagttgttgtctatg 5303920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 210 - 302
Target Start/End: Original strand, 24249759 - 24249851
Alignment:
Q  210 gagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttg 302  Q
    |||||||||||||||||||||||||||| |   |||||| ||||||||||||||||||||||||||  ||||||||| |||| ||||| ||||    
T  24249759 gagtagtttgcatgtggttagggttgatataggaattgacaatttgatgattgcatgtgtagtttatgaattgataaatgaatgtagttgttg 24249851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 210 - 291
Target Start/End: Original strand, 37327080 - 37327160
Alignment:
Q  210 gagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaa 291  Q
    |||||||||||||||| |||||||| |||| |||||||| ||||||||||||||||||||||||||  ||||||||| ||||    
T  37327080 gagtagtttgcatgtg-ttagggttaattttaaaattgacaatttgatgattgcatgtgtagtttatgaattgataaatgaa 37327160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 35026740 - 35026784
Alignment:
Q  231 ggttgatttcaaaattgagaatttgatgattgcatgtgtagttta 275  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||    
T  35026740 ggttgattttaaaattgacaatttgatgattgcatgtgtagttta 35026784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 267
Target Start/End: Original strand, 45127937 - 45128082
Alignment:
Q  122 aatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgca 221  Q
    ||||| || |||||||||| |||||||| |  | ||||| ||||||| |||||||| |||||||||||| |         ||||| | ||||||||||||    
T  45127937 aatcatctccacattatcacaagtaagtagcattaatcaatttaatcttaatgttagtttgtttaggttaagtttttttaaaaaaattgagtagtttgca 45128036  T
Q  222 tgtggttagggttgatttcaaaattgagaatttgatgattgcatgt 267  Q
    |||||||| ||||||| |   |||||| | ||||||||||||||||    
T  45128037 tgtggttatggttgatgtaggaattgaaattttgatgattgcatgt 45128082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 486181 - 486250
Alignment:
Q  59 acttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaac 128  Q
    |||||||||| ||| ||| || |||| ||||||| |||  |||||||||||||||||| |||||||||||    
T  486181 acttcacaaagttctcaagttctctcaaatcttcgccaattcttctttcacgaattgcgagcaaatcaac 486250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 308
Target Start/End: Original strand, 39947680 - 39947974
Alignment:
Q  15 tgaactaaaccagaaagcagaaccagacttccccattttccaaaacttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaatt 114  Q
    |||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  39947680 tgaactaaactagaacgcagaaccagactttcccattttccaaaacttcacaaaattcataaattttctccaatcttcaccaaatcttctttcacgaatt 39947779  T
Q  115 gcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttga-nnnnnnnagaaaaattagagt 213  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||        | ||||||||||||    
T  39947780 gcaagcaaatcaacggcacattatcacaagtaagttgtgtcaatcattttaatcataatgttaatatgtttaggttgattttttttaaaaaaattagagt 39947879  T
Q  214 agtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||| ||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| ||||||||| |||| ||||| ||||||||||    
T  39947880 agtttgtatgtggttagggttgattttaaaattgacaattcgatgattgcatgtgtagtttaggaattgataaatgaatgtagttgttgcctatg 39947974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 65 - 308
Target Start/End: Original strand, 28468772 - 28469015
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||| ||| || |||||||||||||||| |||   |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||     
T  28468772 caaaattctcaatttctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcacattatcacaagtaagttgtgtcaatcatttg 28468871  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    |||  |||||||||||||||||||||||       | |||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||    
T  28468872 aatgttaatgttaatttgtttaggttgatttttttaaaaaaattagagtagtttgtatgtggttagggttgattttaaaattgacaatttgatgattgca 28468971  T
Q  265 tgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    ||||||||||||||||||||||||||| ||| | ||||||||||    
T  28468972 tgtgtagtttagaaattgataattgaatgtaattgttgcctatg 28469015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 124 - 308
Target Start/End: Original strand, 17420757 - 17420941
Alignment:
Q  124 tcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatg 223  Q
    |||| |||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||       ||||||||||||||||||||||||    
T  17420757 tcaagtgcacattatcacaagtaagttgtgtcaatcattttaatgttaatgttaatttgtttaggttgatttttttagaaaaattagagtagtttgcatg 17420856  T
Q  224 tggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||    
T  17420857 tggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgatcattgaatgtagttgttgcctatg 17420941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 67 - 291
Target Start/End: Original strand, 21998323 - 21998547
Alignment:
Q  67 aaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaa 166  Q
    |||||| ||| || |||||||||||||||| |||   |||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||    
T  21998323 aaattctcaatttctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaattgtacattatcacaagtaagttgtgtcaatcattttaa 21998422  T
Q  167 tcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatg 266  Q
    |  |||||||||||||||||||||||       | |||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||    
T  21998423 tgttaatgttaatttgtttaggttgatttttttaaaaaaattagagtagtttgtatgtggttagggttgattttaaaattgacaatttgatgattgcatg 21998522  T
Q  267 tgtagtttagaaattgataattgaa 291  Q
    |||||||||| ||||||||||||||    
T  21998523 tgtagtttagtaattgataattgaa 21998547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 22 - 306
Target Start/End: Original strand, 45428678 - 45428963
Alignment:
Q  22 aaccagaaagcagaaccagacttccccattttccaaaacttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagca 121  Q
    |||||||| |||||||||||  | | ||||| | ||| |||  |||| || |||| || |||| ||||||| ||| |||   ||||||||||||||||||    
T  45428678 aaccagaacgcagaaccagaacttctcatttccaaaaccttttcaaatttaacaatttctctcaaatcttctccaaatccattttcacgaattgcaagca 45428777  T
Q  122 aatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaaaa-attagagtagtttgc 220  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||       | |||| ||||||||||||||     
T  45428778 aatcaagtgcacattatcacaagtaagttgtgtcaatcattttaatgttaatgttaatttgtttaggttgatttttaaaaaaaaaattagagtagtttgt 45428877  T
Q  221 atgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgccta 306  Q
    ||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  45428878 atgtggttagggttgatttaaaaaatgacaatttgatgattgcatgtgtagtttagaaattgataattgaatgtagttgttgccta 45428963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 65 - 308
Target Start/End: Complemental strand, 45137374 - 45137131
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||||||| || |||||||||||||||| | |   |||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  45137374 caaaattcacaatttctctccaatcttcaccaaagccattttcacaaattgcaagcaaatcaactgcacattatcacaagtaagttgtatcaatcatttt 45137275  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    ||| ||| ||||| |||||||||||| |       | |||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||    
T  45137274 aatgatagtgttagtttgtttaggtttatttttaaaaaaaaattagagtagtttgcatgtggttaaggttgattttaaaattgacaatttgatgattgca 45137175  T
Q  265 tgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||||||| ||||||||| |||| |||||  |||||||||    
T  45137174 tgtgtagtttaggaattgataaatgaatgtagttcttgcctatg 45137131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 66 - 308
Target Start/End: Original strand, 25964944 - 25965194
Alignment:
Q  66 aaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttta 165  Q
    ||||||| ||| || |||||||||||||||| | |   ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  25964944 aaaattctcaatttctctccaatcttcaccaaagccattttcacgaattgcaagcaaatcaactgcacattatcacaagtaagttgtatcaatcatttta 25965043  T
Q  166 atcataatgttaatttgtttaggttgannnnnnnagaaaaat--------tagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgat 257  Q
    |||||||||||| |||||||||||| |       | ||||||        |||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  25965044 atcataatgttagtttgtttaggtttattttaaaaaaaaaataaaaaaaatagagtagtttgcatgtggttagggttgattttaaaattgacaatttgat 25965143  T
Q  258 gattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    ||||||||||||||||||| ||||||||| |||| ||||| ||| ||||||    
T  25965144 gattgcatgtgtagtttaggaattgataaatgaatgtagttgtttcctatg 25965194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 65 - 308
Target Start/End: Original strand, 7185159 - 7185403
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||| ||| || |||||||||||||||| |||   |||||||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||||    
T  7185159 caaaattctcaatttctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcgcattatcacaagtaagttgtgtcaataatttt 7185258  T
Q  165 aatcataatgttaatttgtttaggttga-nnnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgc 263  Q
    |||  ||||||| |||||||||||||||        | ||||| |||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  7185259 aatgttaatgttgatttgtttaggttgatttttaaaaaaaaaaatagagtagtttgtatgtggttagggttgattttaaaattgacaatttgatgattgc 7185358  T
Q  264 atgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||| |||||| ||||||||| |||| ||||| ||||||||||    
T  7185359 atgtgttgtttaggaattgataaatgaatgtagttgttgcctatg 7185403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 104 - 308
Target Start/End: Complemental strand, 32956258 - 32956053
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaa 203  Q
    |||||| ||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||  |||||||||||||||||||||||       | ||    
T  32956258 tttcacaaatagcaagcaaatcaactgcacattatcacaagtaagttgtgccaatcattttaatgttaatgttaatttgtttaggttgatttttttaaaa 32956159  T
Q  204 aaa-ttagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttg 302  Q
    ||| ||||||||||||| |||||||| |||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||| |||| ||| | ||||    
T  32956158 aaaattagagtagtttgtatgtggtttgggttgattttaaaattgacaatttgatgattgcatgtgtagtttaggaattgataaatgaatgtacttgttg 32956059  T
Q  303 cctatg 308  Q
    ||||||    
T  32956058 cctatg 32956053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 65 - 186
Target Start/End: Complemental strand, 42505703 - 42505582
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||  |||||| |||||||||||||||| |||   |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  42505703 caaaattttcaaattctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcacattatcacaagtaagttgtgtcaatcatttt 42505604  T
Q  165 aatcataatgttaatttgttta 186  Q
    |||  |||||||||||||||||    
T  42505603 aatgttaatgttaatttgttta 42505582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 3937983 - 3938052
Alignment:
Q  59 acttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaac 128  Q
    |||||||||| ||| ||| || |||| ||||||| |||  |||||||||||||||||| |||||||||||    
T  3937983 acttcacaaagttctcaagttctctcaaatcttcgccaattcttctttcacgaattgcgagcaaatcaac 3938052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 17424074 - 17424005
Alignment:
Q  59 acttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaac 128  Q
    |||||||||| ||| ||| || |||| ||||||| |||  |||||||||||||||||| |||||||||||    
T  17424074 acttcacaaagttctcaagttctctcaaatcttcgccaattcttctttcacgaattgcgagcaaatcaac 17424005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 25515606 - 25515549
Alignment:
Q  210 gagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgt 267  Q
    |||||||||||||||||||||||||||| |   |||||| | ||||||||||||||||    
T  25515606 gagtagtttgcatgtggttagggttgatgtaggaattgaaattttgatgattgcatgt 25515549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 43982141 - 43982072
Alignment:
Q  59 acttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaac 128  Q
    |||||||||| ||| ||| || |||| ||||||| |||  |||||||||||||||||| |||||||||||    
T  43982141 acttcacaaagttctcaagttctctcaaatcttcgccaattcttctttcacgaattgcgagcaaatcaac 43982072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 31367308 - 31367370
Alignment:
Q  213 tagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagttta 275  Q
    ||||||||||||||||||||||||| |   |||||| | |||||||||||||| | |||||||    
T  31367308 tagtttgcatgtggttagggttgatgtaggaattgatattttgatgattgcatatatagttta 31367370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 297
Target Start/End: Complemental strand, 35464398 - 35464314
Alignment:
Q  213 tagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagt 297  Q
    ||||||||||||||||||| || || |   |||||| | | ||||||||||||||||||||||  |||| |||| |||| |||||    
T  35464398 tagtttgcatgtggttaggatttatgtatgaattgacattctgatgattgcatgtgtagtttatgaatttataaatgaatgtagt 35464314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 21 - 308
Target Start/End: Original strand, 10517077 - 10517354
Alignment:
Q  21 aaaccagaaagcagaaccagacttccccattttccaaaacttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagc 120  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||         ||||||||||||||||||||||| |||||||||||||||||||||||    
T  10517077 aaaccagaacgcagaaccagacttccctattttccaaaacttca---------caaattttctccaatcttcaccaaatcttctttcacgaattgcaagc 10517167  T
Q  121 aaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgc 220  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||       | ||||||||||||||||||     
T  10517168 aaatcaactgcacattatcacaagtaagctgtgtcaatcattttaatcataatgttaatttgtttaggttgattttttaa-aaaaattagagtagtttgt 10517266  T
Q  221 atgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||| |||| ||||| ||||||||||    
T  10517267 atgtggttagggttgattttaaaattgacaatttgatgattgcatgtgtagtttaggaattgataaatgaatgtagttgttgcctatg 10517354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 65 - 308
Target Start/End: Original strand, 34738495 - 34738740
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||||||| || |||||||||||||||| ||||  ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  34738495 caaaattcacaatttctctccaatcttcaccaaatctattttcacgaattgcaagcaaatcatctgcacattatcacaagtaagttgtgtcaatcatttt 34738594  T
Q  165 aatcataatgttaatttgtttaggttga--nnnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattg 262  Q
    ||| ||||||||||||||||||||||||         | |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  34738595 aatgataatgttaatttgtttaggttgatttttaaaaaaaaaaattagagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgattg 34738694  T
Q  263 catgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||||||||| ||||||||| |||| ||||| ||| ||||||    
T  34738695 catgtgtagtttaggaattgataaatgaatgtagttgttacctatg 34738740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 51 - 308
Target Start/End: Complemental strand, 27453576 - 27453318
Alignment:
Q  51 tttccaaaacttca-caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagt 149  Q
    |||||||||||||  |||||||||||| || |||||||||||||||| | |   |||||| ||||||||||||||||| |||||||||||| ||||||||    
T  27453576 tttccaaaacttcttcaaaattcacaatttctctccaatcttcaccaaagccattttcacaaattgcaagcaaatcaattgcacattatcacaagtaagt 27453477  T
Q  150 tgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgag 249  Q
    ||| |||||||||||||| ||||||||| |||||||||||| |       | ||||||||||||||||||||||||||||| |||||||||||||||||     
T  27453476 tgtatcaatcattttaatgataatgttagtttgtttaggtttattttaaaaaaaaaattagagtagtttgcatgtggttagagttgatttcaaaattgac 27453377  T
Q  250 aatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    ||||||||||||||||||||||||||| ||||||||| |||| ||||| ||| ||||||    
T  27453376 aatttgatgattgcatgtgtagtttaggaattgataaatgaatgtagttgttacctatg 27453318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 65 - 308
Target Start/End: Original strand, 17835208 - 17835450
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||| ||| || |||||||||||||||| |||   |||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||    
T  17835208 caaaattctcaatttctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcacattatcacaagtaagttgt-tcaatcatttt 17835306  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    |||  ||||||||||||||||| |||||       | |||||||||||||||||| ||||||||| ||||||||| |||||||| |||||||||||||||    
T  17835307 aatgttaatgttaatttgtttatgttgatttttttaaaaaaattagagtagtttgtatgtggttaaggttgattttaaaattgacaatttgatgattgca 17835406  T
Q  265 tgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||||||| ||||||||| |||| ||||| ||||||||||    
T  17835407 tgtgtagtttaggaattgataaatgaatgtagttgttgcctatg 17835450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 104 - 307
Target Start/End: Original strand, 39460698 - 39460901
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaa 203  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||||| |       | ||    
T  39460698 tttcacgaattgcaagcaaatcaactgcacattatcacaagtaagttgtatcaatcattttaatgataatgttagtttgtttaggtttattttttaaaaa 39460797  T
Q  204 aaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgc 303  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||  ||||||||| |||| ||||| |||||    
T  39460798 aaattagagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgattgcatgtgtagtttatgaattgataaatgaatgtagttgttgc 39460897  T
Q  304 ctat 307  Q
    ||||    
T  39460898 ctat 39460901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 51 - 308
Target Start/End: Original strand, 47776449 - 47776708
Alignment:
Q  51 tttccaaaacttcac-aaaattcacaaattttctccaatcttcaccata-tcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaag 148  Q
    ||||||||||||| | ||||||||| | || |||||||||||||||| | || | |||||| |||||||||||||||||||||||||||||| |||||||    
T  47776449 tttccaaaacttctccaaaattcaccatttctctccaatcttcaccaaagtcat-tttcacaaattgcaagcaaatcaactgcacattatcacaagtaag 47776547  T
Q  149 ttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaaaa-attagagtagtttgcatgtggttagggttgatttcaaaattg 247  Q
     ||| |||||||||||||| ||||||||| |||||||||||| |       | |||| |||||||||||||||||||||||||||||||||| |||||||    
T  47776548 gtgtatcaatcattttaatgataatgttagtttgtttaggtttattttttaaaaaaaaattagagtagtttgcatgtggttagggttgattttaaaattg 47776647  T
Q  248 agaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    | ||||||||||||||||||||||||||| ||||||||| |||| ||||| ||||||||||    
T  47776648 acaatttgatgattgcatgtgtagtttaggaattgataaatgaatgtagttgttgcctatg 47776708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 104 - 308
Target Start/End: Complemental strand, 47672988 - 47672784
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaa 203  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||||| |       | ||    
T  47672988 tttcacgaattgcaagcaaatcaactgcacattatcacaagtaagttgtatcaatcattttaatgataatgttagtttgtttaggtttatttttaaaaaa 47672889  T
Q  204 aaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgc 303  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| || | ||  ||||||||| |||| ||||| |||||    
T  47672888 aaattatagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgattgcatgtataatctatgaattgataaatgaatgtagttgttgc 47672789  T
Q  304 ctatg 308  Q
    |||||    
T  47672788 ctatg 47672784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 74 - 308
Target Start/End: Original strand, 36977736 - 36977972
Alignment:
Q  74 caaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataat 173  Q
    |||||| | |||||||||||||| | |   ||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| |||||    
T  36977736 caaattctttccaatcttcaccaaagccattttcacgaattgcaagcaaatcaactgtacattatcacaagtaagttgtatcaatcattttaatgataat 36977835  T
Q  174 gttaatttgtttaggttgannnnnnn--agaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtag 271  Q
    |||| |||||||||||| |         | ||||||  |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  36977836 gttagtttgtttaggtttattttttttaaaaaaaatctgagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgattgcatgtgtag 36977935  T
Q  272 tttagaaattgataattgaaggtagtggttgcctatg 308  Q
    ||||  ||||||||| |||| ||||| ||||||||||    
T  36977936 tttatgaattgataaatgaatgtagttgttgcctatg 36977972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 65 - 308
Target Start/End: Original strand, 37340435 - 37340678
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||| ||| |||||| | |||||||||||||| | |   ||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||    
T  37340435 caaacttctcaaattctttccaatcttcaccaaagccattttcacgaattgcaagcaaatcaacagcacattatcacaagtaagttgtatcaatcatttt 37340534  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    ||  ||||||||| |||||||||||| |       | |||||||| ||||||||| ||||||||||| ||||||| |||||||| |||||||||||| ||    
T  37340535 aacaataatgttagtttgtttaggtttatttttttaaaaaaattatagtagtttggatgtggttaggattgattttaaaattgacaatttgatgatttca 37340634  T
Q  265 tgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||||||  |||||| || |||| ||| | ||||||||||    
T  37340635 tgtgtagtttatgaattgaaaaatgaatgtacttgttgcctatg 37340678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 104 - 308
Target Start/End: Complemental strand, 9494709 - 9494494
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaa 203  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||||| |       | ||    
T  9494709 tttcacgaattccaagcaaatcaactgcacattatcacaagtaagttgtatcaatcattttaatgataatgttagtttgtttaggtttatttttaaaaaa 9494610  T
Q  204 a-----------aattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaag 292  Q
    |           |||||||||||||||||||||||| |||||||||| |||||||| ||||||||| ||||||||||| ||||  ||||||||| ||||     
T  9494609 ataaaataaaaaaattagagtagtttgcatgtggtttgggttgattttaaaattgaaaatttgatggttgcatgtgtaatttatgaattgataaatgaat 9494510  T
Q  293 gtagtggttgcctatg 308  Q
    ||||| ||||||||||    
T  9494509 gtagttgttgcctatg 9494494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 65 - 308
Target Start/End: Complemental strand, 15074169 - 15073927
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||| ||| || |||||||||||||||| |||   |||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||    
T  15074169 caaaattctcaatttctctccaatcttcaccaaatccattttcacgaattgtaagcaaatcaagtgcacattatcacaagtaagttgtgtcaatcatttt 15074070  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    |||  |||| |||||||||||| ||| |       | ||||||| |||||||||||||||||||||| || ||     |||||| ||||| || ||||||    
T  15074069 aatgttaatattaatttgtttatgttaagttttttaaaaaaatt-gagtagtttgcatgtggttaggttttataaatgaattgacaatttcatcattgca 15073971  T
Q  265 tgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||||||   |||||||| |||| ||||| ||||||||||    
T  15073970 tgtgtagtttatgtattgataaatgaatgtagttgttgcctatg 15073927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 65 - 308
Target Start/End: Complemental strand, 42507968 - 42507726
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||| ||| || |||||||||||||||| |||   |||||||||||||||||||||||| |||||||||||| |||||| ||||||||| ||||||    
T  42507968 caaaattctcaatttctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcacattatcacaagtaacttgtgtcaaacatttt 42507869  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    |||  ||||||||||||||||| ||| |       | ||||||| || ||||||||||||||||||| || ||     |||| | ||||| || ||||||    
T  42507868 aatgttaatgttaatttgtttatgttaagttttttaaaaaaatt-gactagtttgcatgtggttaggttttataaatgaattaacaatttcatcattgca 42507770  T
Q  265 tgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||||||   |||||||| |||| ||||| ||||||||||    
T  42507769 tgtgtagtttatgtattgataaatgaatgtagttgttgcctatg 42507726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 15070595 - 15070669
Alignment:
Q  54 ccaaaacttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaac 128  Q
    ||||| ||||||||||||| ||| || |||| ||||||| ||| ||||||||||||||||||| |||||||||||    
T  15070595 ccaaatcttcacaaaattctcaatttctctcaaatcttcgccaaatcttctttcacgaattgcgagcaaatcaac 15070669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 42504692 - 42504734
Alignment:
Q  86 aatcttcaccatatcttctttcacgaattgcaagcaaatcaac 128  Q
    ||||||| ||| |||||||||||||||||||||||||||||||    
T  42504692 aatcttcgccaaatcttctttcacgaattgcaagcaaatcaac 42504734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 9367848 - 9367916
Alignment:
Q  60 cttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaac 128  Q
    ||||||||| ||| ||| || |||| ||||||| |||  |||||||||||||||||| |||||||||||    
T  9367848 cttcacaaagttctcaagttctctcaaatcttcgccaattcttctttcacgaattgcgagcaaatcaac 9367916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 41734441 - 41734496
Alignment:
Q  212 gtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgt 267  Q
    |||||||||| ||||||||||||||| |   |||||| ||||||||||||||||||    
T  41734441 gtagtttgcacgtggttagggttgatgttggaattgaaaatttgatgattgcatgt 41734496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 190
Target Start/End: Complemental strand, 17741360 - 17741274
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggtt 190  Q
    ||||||||||| ||||| ||||| |  |||||||||| |||||||| |  | | ||||| ||||| |||||||| ||||||||||||    
T  17741360 tttcacgaattacaagccaatcatccccacattatcaaaagtaagtagcattagtcattgtaatcttaatgttagtttgtttaggtt 17741274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 163; Significance: 5e-87; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 65 - 308
Target Start/End: Complemental strand, 40358222 - 40357979
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||| ||| || |||||||||||||||| |||   |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  40358222 caaaattctcaatttctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcacattatcacaagtaagttgtgtcaatcatttt 40358123  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    |||  |||||||||||||||||||||||       | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40358122 aatgttaatgttaatttgtttaggttgattttttaaaaaaaattagagtagtttgtatgtggttagggttgatttcaaaattgagaatttgatgattgca 40358023  T
Q  265 tgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||    
T  40358022 tgtgtagtttagaaattgataattgaatgtagttgttgcctatg 40357979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 65 - 308
Target Start/End: Original strand, 50274865 - 50275108
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||||||| || |||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  50274865 caaaattcacaatttctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaactgcacattatcacaagtaagttgtgtcaatcatttt 50274964  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    ||| |||||||||||||||||||||| |       | ||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||    
T  50274965 aatgataatgttaatttgtttaggttaatttttaaaaaaaaattagagtagtttgcatgtggttagggttaattttaaaattgacaatttgatgattgca 50275064  T
Q  265 tgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||||||| ||||||||| |||| ||||| ||||||||||    
T  50275065 tgtgtagtttaggaattgataaatgaatgtagttgttgcctatg 50275108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 81 - 308
Target Start/End: Complemental strand, 21022814 - 21022587
Alignment:
Q  81 tctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatt 180  Q
    |||||||||||||||| |||   |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||  |||||||||||    
T  21022814 tctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcacattatcacaagtaagttgtgtcaatcattttaatgttaatgttaatt 21022715  T
Q  181 tgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaat 280  Q
    ||||||||||||         ||||| | |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  21022714 tgtttaggttgattttttttaaaaaaattgagtagtttgtatgtggttagggttgatttcaaaattgacaatttgatgattgcatgtgtagtttaggaat 21022615  T
Q  281 tgataattgaaggtagtggttgcctatg 308  Q
    |||||| |||| ||||| ||||||||||    
T  21022614 tgataaatgaatgtagttgttgcctatg 21022587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 66 - 308
Target Start/End: Complemental strand, 55407732 - 55407486
Alignment:
Q  66 aaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttta 165  Q
    ||||||| ||| || |||||||||||||||| | |   ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  55407732 aaaattctcaatttctctccaatcttcaccaaaaccattttcacgaattgcaagcaaatcaactgcacattatcacaagtaagttgtatcaatcatttta 55407633  T
Q  166 atcataatgttaatttgtttaggttgannnnnnnagaaaaa----ttagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgatt 261  Q
    || ||||||||| |||||||||||| |       | |||||    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  55407632 atgataatgttagtttgtttaggtttattttaaaaaaaaaaaaaattagagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgatt 55407533  T
Q  262 gcatgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    ||||||||||||||  ||||||||| |||| ||||| ||||||||||    
T  55407532 gcatgtgtagtttatgaattgataaatgaatgtagttgttgcctatg 55407486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 65 - 308
Target Start/End: Original strand, 51683332 - 51683576
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||| ||| |||||| | |||||||||||||| | | | |||||||||||||||||||||||||| |||||||||| ||||||||| | |||||||||||    
T  51683332 caaacttctcaaattctttccaatcttcaccaaaccat-tttcacgaattgcaagcaaatcaactacacattatcacaagtaagttatatcaatcatttt 51683430  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaa--attagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattg 262  Q
    ||| ||||||||| |||||||||||| |       | ||||  |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  51683431 aatgataatgttagtttgtttaggtttatttttaaaaaaaaaaattagagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgattg 51683530  T
Q  263 catgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||| ||||  ||||||||| |||| ||||| |||| |||||    
T  51683531 catgtgtattttatgaattgataaatgaatgtagttgttgtctatg 51683576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 104 - 308
Target Start/End: Original strand, 67762 - 67965
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaa 203  Q
    |||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||||||||| | ||||||| |||||||||||| |       | ||    
T  67762 tttcacgaattgcaagaaaatcaaccgcacattatcacaagtaagttgtatcaatcattttaatga-aatgttagtttgtttaggtttattttttaaaaa 67860  T
Q  204 aaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgc 303  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||  ||||||||| | || ||||| |||||    
T  67861 aaattagagtagtttgcatgtggttagggttgattttaaaattgacaatttaatgattgcatgtgtagtttatgaattgataaataaatgtagttgttgc 67960  T
Q  304 ctatg 308  Q
    |||||    
T  67961 ctatg 67965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 74 - 308
Target Start/End: Complemental strand, 48256505 - 48256270
Alignment:
Q  74 caaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataat 173  Q
    |||||| | |||||||||||||| | |   ||||||||||||||| ||||||||||||||||||||| |||||| |||| |||||||||||||| |||||    
T  48256505 caaattctttccaatcttcaccaaagccattttcacgaattgcaaacaaatcaactgcacattatcacaagtaaattgtatcaatcattttaatgataat 48256406  T
Q  174 gttaatttgtttaggttgannnnnnnagaaaaa-ttagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagt 272  Q
     ||| |||| ||||||| |       | ||||| |||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||    
T  48256405 attagtttgcttaggtttatttttttaaaaaaaattagagtagtttgcatgtggttagggttaattttaaaattgacaatttgatgattgcatgtgtagt 48256306  T
Q  273 ttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||  ||||||||| |||| ||||| ||||||||||    
T  48256305 ttatgaattgataaatgaatgtagttgttgcctatg 48256270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 110 - 308
Target Start/End: Original strand, 50901657 - 50901854
Alignment:
Q  110 gaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaaaaatta 209  Q
    ||||||||||||||||||  ||||||||||| ||||||||||  |||||||||||||| ||||||||| |||||||||||| |       | ||||||||    
T  50901657 gaattgcaagcaaatcaatcgcacattatcacaagtaagttgcatcaatcattttaatgataatgttagtttgtttaggtttatttttaaa-aaaaatta 50901755  T
Q  210 gagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    ||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||| |||| ||||| |||| |||||    
T  50901756 gagtagtttacatgtggttagggttgattttaaaattgacaatttgatgattgcatgtgtagtttaggaattgataaatgaatgtagttgttgtctatg 50901854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 65 - 296
Target Start/End: Complemental strand, 1309055 - 1308825
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||| |||||| |||||||||||||||| |||   |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  1309055 caaaattctcaaattctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcacattatcacaagtaagttgtgtcaatcatttt 1308956  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    |||  ||||||||||||||||| ||| |       | ||||||| |||||||||||||||||||||| || ||     |||||| ||||| || ||||||    
T  1308955 aatgttaatgttaatttgtttatgttaagttttttaaaaaaatt-gagtagtttgcatgtggttaggttttataaatgaattgacaatttcatcattgca 1308857  T
Q  265 tgtgtagtttagaaattgataattgaaggtag 296  Q
    |||||||||||   |||||||| |||| ||||    
T  1308856 tgtgtagtttatgtattgataaatgaatgtag 1308825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 65 - 308
Target Start/End: Complemental strand, 30726682 - 30726440
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||| ||| || |||||||||||||||| |||   |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  30726682 caaaattctcaatttctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcacattatcacaagtaagttgtgtcaatcatttt 30726583  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    |||  ||||||||||||||||| ||| |       | ||||||| ||||||||||||| |||||||| || ||     |||||| ||||| || ||||||    
T  30726582 aatgttaatgttaatttgtttatgttaagtttttaaaaaaaatt-gagtagtttgcatttggttaggttttataaatgaattgacaatttcatcattgca 30726484  T
Q  265 tgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
     ||||||||||   |||||||| |||| ||||| ||||||||||    
T  30726483 cgtgtagtttatgtattgataaatgaatgtagttgttgcctatg 30726440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 65 - 296
Target Start/End: Complemental strand, 1089525 - 1089295
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||| ||| || |||||||||||||||| |||   |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  1089525 caaaattctcaatttctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcacattatcacaagtaagttgtgtcaatcatttt 1089426  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    |||  ||||||||||||||||| ||| |         ||||||| |||||||||||||||||||||| || ||     |||||| ||||| || ||||||    
T  1089425 aatgttaatgttaatttgtttatgttaagtttttttaaaaaatt-gagtagtttgcatgtggttaggttttataaatgaattgacaatttcatcattgca 1089327  T
Q  265 tgtgtagtttagaaattgataattgaaggtag 296  Q
     ||||||||||   |||||||| |||| ||||    
T  1089326 agtgtagtttatgtattgataaatgaatgtag 1089295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 8109540 - 8109649
Alignment:
Q  81 tctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatt 180  Q
    |||||||||||||||| ||    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| ||    
T  8109540 tctccaatcttcaccaaattcattttcacgaattgcaagcaaatcaactgcacattatcacaagtaagttgtatcaatcattttaatgataatgttagtt 8109639  T
Q  181 tgtttaggtt 190  Q
    ||||||||||    
T  8109640 tgtttaggtt 8109649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 203 - 308
Target Start/End: Complemental strand, 37021887 - 37021782
Alignment:
Q  203 aaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttg 302  Q
    ||||||||||||||||| |||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| ||||||||| |||| ||||| ||||    
T  37021887 aaaattagagtagtttgtatgtggttagagttgattttaaaattgacaatttgatgattgcatgtgtagtttaggaattgataaatgaatgtagttgttg 37021788  T
Q  303 cctatg 308  Q
    | ||||    
T  37021787 catatg 37021782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 104 - 308
Target Start/End: Complemental strand, 21538364 - 21538161
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaa 203  Q
    |||||||||||||||||||||||||  |||||||||| ||||||||||  |||||||||||||||||||||||| |||||||| ||| |         ||    
T  21538364 tttcacgaattgcaagcaaatcaaccacacattatcacaagtaagttgcatcaatcattttaatcataatgttagtttgttta-gtttaagtttttttaa 21538266  T
Q  204 aaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgc 303  Q
    ||||   |||||||||||||||||||||||| ||     |||||| |||||||  |||||||| ||||||||  ||||||||| |||| ||||| |||||    
T  21538265 aaatataagtagtttgcatgtggttagggtttatgaatgaattgacaatttgaacattgcatgggtagtttatgaattgataaatgaatgtagttgttgc 21538166  T
Q  304 ctatg 308  Q
    |||||    
T  21538165 ctatg 21538161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 104 - 310
Target Start/End: Complemental strand, 11083918 - 11083713
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaa 203  Q
    ||||||||||||||||| ||||| |  |||||||||| ||||||||    | |||||||  |||| |||||||| |||||||||||| |       | ||    
T  11083918 tttcacgaattgcaagccaatcatccccacattatcacaagtaagtaccattaatcattgcaatcttaatgttagtttgtttaggttaagttttgaaaaa 11083819  T
Q  204 aaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgc 303  Q
    ||||| ||||||||||||||||||||||||| ||     |||||| |||||||| |||||||||||||||||   |||||||| |||| ||||| |||||    
T  11083818 aaatt-gagtagtttgcatgtggttagggtttatgaatgaattgacaatttgatcattgcatgtgtagtttatgtattgataaatgaatgtagttgttgc 11083720  T
Q  304 ctatgct 310  Q
    |||||||    
T  11083719 ctatgct 11083713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 310
Target Start/End: Complemental strand, 10753312 - 10753134
Alignment:
Q  131 cacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttag 230  Q
    |||||||| | ||||||||||  |||||||||||||||||||||||| ||||||||| || |       | ||||||  |||||||||||||||||||||    
T  10753312 cacattatgacaagtaagttgcatcaatcattttaatcataatgttagtttgtttagtttaagtttttta-aaaaatatgagtagtttgcatgtggttag 10753214  T
Q  231 ggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatgct 310  Q
    |||| ||     |||||| |||||||  |||||||||||||||||  ||||||||| |||| ||||  ||||||||||||    
T  10753213 ggtttatgaatgaattgacaatttgaacattgcatgtgtagtttatgaattgataaatgaatgtagatgttgcctatgct 10753134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 310
Target Start/End: Complemental strand, 10967081 - 10966903
Alignment:
Q  131 cacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttag 230  Q
    |||||||| | ||||||||||  |||||||||||||||||||||||| ||||||||| || |       | ||||||  |||||||||||||||||||||    
T  10967081 cacattatgacaagtaagttgcatcaatcattttaatcataatgttagtttgtttagtttaagtttttta-aaaaatatgagtagtttgcatgtggttag 10966983  T
Q  231 ggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatgct 310  Q
    |||| ||     |||||| |||||||  |||||||||||||||||  ||||||||| |||| ||||  ||||||||||||    
T  10966982 ggtttatgaatgaattgacaatttgaacattgcatgtgtagtttatgaattgataaatgaatgtagatgttgcctatgct 10966903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 310
Target Start/End: Original strand, 46436521 - 46436620
Alignment:
Q  210 gagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatgc 309  Q
    |||||||||||| ||| |||||||| |||| |||||||| ||||||||||||||||||||||||||  |||| ||||  ||| ||||| ||||| |||||    
T  46436521 gagtagtttgcacgtg-ttagggttaattttaaaattgacaatttgatgattgcatgtgtagtttatgaattaataaacgaatgtagttgttgcttatgc 46436619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 40354692 - 40354775
Alignment:
Q  53 tccaaaacttcacaaaattcacaaattttctccaatcttcaccatat-cttctttc-acgaattgcaagcaaatcaactgcaca 134  Q
    |||||||||||| ||||||| ||| || |||||||||||| ||| || |||||||| ||||||||||||||||||||| |||||    
T  40354692 tccaaaacttcaaaaaattctcaatttctctccaatcttcgccaaatacttctttctacgaattgcaagcaaatcaacggcaca 40354775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 308
Target Start/End: Original strand, 14297401 - 14297499
Alignment:
Q  210 gagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||||||||||||||||| || ||     |||||| ||||| || |||||||||||||||||  ||||||||| |||| ||||| ||||||||||    
T  14297401 gagtagtttgcatgtggttaggttttatgaatgaattgacaatttcatcattgcatgtgtagtttatgaattgataaatgaatgtagttgttgcctatg 14297499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 308
Target Start/End: Original strand, 14315650 - 14315748
Alignment:
Q  210 gagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||||||||||||||||| || ||     |||||| ||||| || |||||||||||||||||  ||||||||| |||| ||||| ||||||||||    
T  14315650 gagtagtttgcatgtggttaggttttatgaatgaattgacaatttcatcattgcatgtgtagtttatgaattgataaatgaatgtagttgttgcctatg 14315748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 104 - 267
Target Start/End: Complemental strand, 41933524 - 41933363
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaa 203  Q
    |||||||| |||||||||| ||| || |||||||||| |||||||| |  | ||||| | ||||| |||||||| |||||||||||| |         ||    
T  41933524 tttcacgatttgcaagcaa-tcatctccacattatcacaagtaagtagaattaatcaatgtaatcttaatgttagtttgtttaggttaagtttttttaaa 41933426  T
Q  204 aaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgt 267  Q
    ||||| ||||||||||||||||| |||||||||| |   |||||| | ||||||||||||||||    
T  41933425 aaatt-gagtagtttgcatgtggatagggttgatgtaggaattgatattttgatgattgcatgt 41933363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 6178241 - 6178310
Alignment:
Q  59 acttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaac 128  Q
    |||||||||| ||| ||| || |||| ||||||| |||  |||||||||||||||||| |||||||||||    
T  6178241 acttcacaaagttctcaagttctctcaaatcttcgccaattcttctttcacgaattgcgagcaaatcaac 6178310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 41795487 - 41795556
Alignment:
Q  59 acttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaac 128  Q
    |||||||||| ||| ||| || |||| ||||||| |||  |||||||||||||||||| |||||||||||    
T  41795487 acttcacaaagttctcaagttctctcaaatcttcgccaattcttctttcacgaattgcgagcaaatcaac 41795556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 49094026 - 49093957
Alignment:
Q  59 acttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaac 128  Q
    |||||||||| ||| ||| || |||| ||||||| |||  |||||||||||||||||| |||||||||||    
T  49094026 acttcacaaagttctcaagttctctcaaatcttcgccaattcttctttcacgaattgcgagcaaatcaac 49093957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 275
Target Start/End: Complemental strand, 4720163 - 4720100
Alignment:
Q  212 gtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagttta 275  Q
    ||||||||||||||||||||||| |  | | |||||| | |||||||||||| |||||||||||    
T  4720163 gtagtttgcatgtggttagggtttacgtaagaattgacattttgatgattgcgtgtgtagttta 4720100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 37021988 - 37021933
Alignment:
Q  81 tctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacatt 136  Q
    |||||||||||||||| ||    |||||||||| ||||||||||||||||||||||    
T  37021988 tctccaatcttcaccaaattcattttcacgaatagcaagcaaatcaactgcacatt 37021933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 37021936 - 37021903
Alignment:
Q  159 cattttaatcataatgttaatttgtttaggttga 192  Q
    ||||||||| ||||||||||||||||||||||||    
T  37021936 cattttaatgataatgttaatttgtttaggttga 37021903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 5e-87; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 65 - 308
Target Start/End: Complemental strand, 29622366 - 29622123
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||| ||| || |||||||||||||||| |||   |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  29622366 caaaattctcaatttctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcacattatcacaagtaagttgtgtcaatcatttt 29622267  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    |||  |||||||||||||||||||||||       | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29622266 aatgttaatgttaatttgtttaggttgatttttttaaaaaaattagagtagtttgtatgtggttagggttgatttcaaaattgagaatttgatgattgca 29622167  T
Q  265 tgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||    
T  29622166 tgtgtagtttagaaattgataattgaatgtagttgttgcctatg 29622123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 79 - 308
Target Start/End: Original strand, 52802275 - 52802505
Alignment:
Q  79 tttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaa 178  Q
    ||||||||||| |||||| |  |  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  52802275 tttctccaatcgtcaccaaagttattttcacgaattgcaagcaaatcaactgcacattatcacaagtaagttgtgtcaatcattttaatgataatgttaa 52802374  T
Q  179 tttgtttaggttga-nnnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttaga 277  Q
    ||||||||||||||        | |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||      
T  52802375 tttgtttaggttgattttttttaaaaaaattagagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgattgcatgtgtagtttaag 52802474  T
Q  278 aattgataattgaaggtagtggttgcctatg 308  Q
    ||||||||| |||| ||||| ||||| ||||    
T  52802475 aattgataaatgaatgtagttgttgcttatg 52802505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 51 - 308
Target Start/End: Original strand, 47502431 - 47502689
Alignment:
Q  51 tttccaaaacttcac-aaaattcacaaattttctccaatcttcaccata-tcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaag 148  Q
    ||||||||||||| | ||||||||||| || |||||||||||||||| | || | ||| ||||||||||| ||||||||||||||||||||| |||||||    
T  47502431 tttccaaaacttctccaaaattcacaatttctctccaatcttcaccaaaatcattttt-acgaattgcaaacaaatcaactgcacattatcacaagtaag 47502529  T
Q  149 ttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattga 248  Q
    |||| |||||||||||||| ||||||||| |||||||||||| |       | ||||||||||||||||||||||||||||| |||||||| ||||||||    
T  47502530 ttgtatcaatcattttaatgataatgttagtttgtttaggtttattttttaaaaaaaattagagtagtttgcatgtggttagagttgattttaaaattga 47502629  T
Q  249 gaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
     ||||||||||||||||||||| ||||| ||||||||| |||| ||||| ||||||||||    
T  47502630 caatttgatgattgcatgtgtaatttaggaattgataaatgaatgtagttgttgcctatg 47502689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 65 - 269
Target Start/End: Original strand, 22524258 - 22524461
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||| |||||| |||||||||||||||| |||   ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  22524258 caaaattctcaaattctctccaatcttcaccaaatcgattttcacgaattgcaagcaaatcaactgcaaattatcacaagtaagttgtgtcaatcatttt 22524357  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    ||| ||||||||||||||||||||||||       | |||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  22524358 aatgataatgttaatttgtttaggttgattttttaa-aaaaattagagtggtttgcatgtggttagggttgattttaaaattgataatttgatgattgca 22524456  T
Q  265 tgtgt 269  Q
    |||||    
T  22524457 tgtgt 22524461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 65 - 308
Target Start/End: Complemental strand, 35258814 - 35258572
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||| ||| |||||| | |||||||||||||| | ||  ||||| |||||||||||| |||||||||||||||||| ||||||||||| |||||||||||    
T  35258814 caaacttctcaaattctttccaatcttcaccaaagctattttcatgaattgcaagcatatcaactgcacattatcacaagtaagttgtatcaatcatttt 35258715  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    ||| ||||||||| |||||||||||| |       | |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  35258714 aataataatgttagtttgtttaggtttatttttaaa-aaaaattagagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgattgca 35258616  T
Q  265 tgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||||||  ||||||||| ||||  |||| ||||||||||    
T  35258615 tgtgtagtttatgaattgataaatgaatttagttgttgcctatg 35258572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 2425674 - 2425528
Alignment:
Q  18 actaaaccagaaagcagaaccagacttccccattttccaaaacttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgca 117  Q
    |||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2425674 actaaaccagaacgca-aaccggacttccccattttccaaaacttcacaaaattcacaaattttctccaatcttcaccaaatcttctttcacgaattgca 2425576  T
Q  118 agcaaatcaactgcacattatcataagtaagttgtgtcaatcatttta 165  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||    
T  2425575 agcaaatcaactgcgcattatcacaagtaagttgtgtcaatcatttta 2425528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 104 - 308
Target Start/End: Complemental strand, 23276011 - 23275803
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaa 203  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||| ||||||||| |||||||||||| |       | ||    
T  23276011 tttcacgaattgcaagcaaatcaactgcacgttatcacaagtaagttgtatcaatcattttaatgataatgttagtttgtttaggtttattttaaaaaaa 23275912  T
Q  204 aaa----ttagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtgg 299  Q
    |||    |||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||  ||||||||| |||| ||||| |    
T  23275911 aaaaaaattagagtagtttgcatgtggttagggttgatttttaaattgacaatttgatgattgcatgtgtagtttatgaattgataaatgaatgtagttg 23275812  T
Q  300 ttgcctatg 308  Q
    |||||||||    
T  23275811 ttgcctatg 23275803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 74 - 307
Target Start/End: Original strand, 51320854 - 51321087
Alignment:
Q  74 caaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtca--atcattttaatcata 171  Q
    |||||| | |||||||||||||| | |   |||||||||||| |||||||||||||||||||||||| ||||||||||  | |  ||||||||||| |||    
T  51320854 caaattctttccaatcttcaccaaaaccattttcacgaattggaagcaaatcaactgcacattatcacaagtaagttgaataataatcattttaatgata 51320953  T
Q  172 atgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtag 271  Q
    |||||| |||||||||||| |       | ||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  51320954 atgttagtttgtttaggtttatttta--aaaaaaaatagagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgattgcatgtgtag 51321051  T
Q  272 tttagaaattgataattgaaggtagtggttgcctat 307  Q
    ||||  ||||||||| |||| ||||| |||||||||    
T  51321052 tttatgaattgataaatgaatgtagttgttgcctat 51321087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 74 - 286
Target Start/End: Original strand, 11183318 - 11183533
Alignment:
Q  74 caaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataat 173  Q
    |||||| | |||||||||||||| | |   ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| || ||    
T  11183318 caaattctttccaatcttcaccaaagcaattttcacgaattgcaagcaaatcaactgcacattatcacaagtaagttgtatcaattattttaatgattat 11183417  T
Q  174 gttaatttgtttaggttga---nnnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgta 270  Q
    |||| |||||||||||| |          ||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| ||||||||    
T  11183418 gttagtttgtttaggtttatttaaaaaaaagaaaaattagagtagtttgcatgtggttagagttgattttaaaattgacaatttgatgattacatgtgta 11183517  T
Q  271 gtttagaaattgataa 286  Q
    |||||  |||||||||    
T  11183518 gtttatgaattgataa 11183533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 142 - 308
Target Start/End: Complemental strand, 19527408 - 19527242
Alignment:
Q  142 aagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttca 241  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||       | |||||||||||||||||||||||||||| ||||||||| |    
T  19527408 aagtaagttgtgtcaatcattttaatgataatgttaatttgtttaagttgattttaaaaaaaaaattagagtagtttgcatgtggttatggttgatttta 19527309  T
Q  242 aaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    ||||||| ||||||||||||||||||||| ||||  ||||||||| |||| ||||| ||||||||||    
T  19527308 aaattgacaatttgatgattgcatgtgtattttatgaattgataaatgaatgtagttgttgcctatg 19527242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 65 - 308
Target Start/End: Original strand, 30890193 - 30890435
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||| |||||| |||||||||||||||| |||   |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  30890193 caaaattctcaaattctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcacattatcacaagtaagttgtgtcaatcatttt 30890292  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    |||  ||||||||||||||||| ||| |       | ||||||| |||||||||||||||||||||| || ||     |||||| ||||| || ||||||    
T  30890293 aatgttaatgttaatttgtttatgttaagttttttaaaaaaatt-gagtagtttgcatgtggttaggttttataaatgaattgacaatttcatcattgca 30890391  T
Q  265 tgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||||||   |||||||| |||| ||||  ||||||||||    
T  30890392 tgtgtagtttatgtattgataaatgaatgtagatgttgcctatg 30890435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 104 - 308
Target Start/End: Original strand, 45825057 - 45825250
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaa 203  Q
    ||||||||||||| ||||||||||  ||| ||||||| ||||||||||| |||||||||||||| ||||||||| ||| |||   || |         ||    
T  45825057 tttcacgaattgccagcaaatcaatcgcatattatcacaagtaagttgtatcaatcattttaatgataatgttagtttattt---ttaaa--------aa 45825145  T
Q  204 aaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgc 303  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||  ||||||||| |||| ||||| |||||    
T  45825146 aaattagagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgattgcatgtgtagtttatgaattgataaatgaatgtagttgttgc 45825245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 152 - 308
Target Start/End: Complemental strand, 31783587 - 31783427
Alignment:
Q  152 tgtcaatcattttaatcataatgttaatttgtttaggttga----nnnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattg 247  Q
    ||||||||||||||||  ||||||||||||||||||||| |           | |||||||||||||||||| ||||||||||||||||||| |||||||    
T  31783587 tgtcaatcattttaatgttaatgttaatttgtttaggtttattttttataaaaaaaaaattagagtagtttgtatgtggttagggttgattttaaaattg 31783488  T
Q  248 agaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    | ||||||||||||| ||||||||||||| ||||||||| | || ||||| ||||||||||    
T  31783487 acaatttgatgattgtatgtgtagtttaggaattgataaataaatgtagttgttgcctatg 31783427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 157 - 269
Target Start/End: Complemental strand, 2425224 - 2425113
Alignment:
Q  157 atcattttaatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttga 256  Q
    ||||||||||||||||||||||||||||||||||||       | |||||||||||||||||| |||||||||| |||||||| |||||||| |||||||    
T  2425224 atcattttaatcataatgttaatttgtttaggttgattttttaa-aaaaattagagtagtttgtatgtggttagagttgattttaaaattgataatttga 2425126  T
Q  257 tgattgcatgtgt 269  Q
    |||||||||||||    
T  2425125 tgattgcatgtgt 2425113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 65 - 178
Target Start/End: Original strand, 19924888 - 19925001
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||| ||| || |||||||||||||||| |||   |||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||    
T  19924888 caaaattctcaatttctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcgcattatcacaagtaagttgtgtcaatcatttt 19924987  T
Q  165 aatcataatgttaa 178  Q
    |||  |||||||||    
T  19924988 aatgttaatgttaa 19925001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 11196148 - 11196232
Alignment:
Q  202 aaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataa 286  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||  |||||||||    
T  11196148 aaaaattagagtagtttgcatgtggttagggttgattttaaaattgacattttgatgattgcatgtgtagtttatgaattgataa 11196232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 13636252 - 13636327
Alignment:
Q  53 tccaaaacttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaac 128  Q
    |||||||||||||||| | | ||| || |||| ||||||| ||| ||||||||||||||||||| |||||||||||    
T  13636252 tccaaaacttcacaaactactcaatttctctcaaatcttcgccaaatcttctttcacgaattgcgagcaaatcaac 13636327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 136
Target Start/End: Complemental strand, 31783658 - 31783587
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacatt 136  Q
    |||||||| ||| || ||| |||||||||||| |||   |||||||||||||||||||||||| ||||||||    
T  31783658 caaaattctcaatttctcttcaatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcacatt 31783587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 267
Target Start/End: Complemental strand, 38127278 - 38127223
Alignment:
Q  212 gtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgt 267  Q
    |||||||||| ||||||||||||||| |   |||||| ||||||||||||||||||    
T  38127278 gtagtttgcacgtggttagggttgatgttggaattgaaaatttgatgattgcatgt 38127223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 65 - 308
Target Start/End: Original strand, 7757455 - 7757698
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||| ||| || |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7757455 caaaattctcaatttctctccaatcttcaccaaatctattttcacgaattgcaagcaaatcaactgcacattatcacaagtaagttgtgtcaatcatttt 7757554  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    |||  |||||||||||||||||||||||       | |||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||    
T  7757555 aatgttaatgttaatttgtttaggttgattttttaaaaaaaattagagtagtttgtatgtggttagggttgattttaaaattgacaatttgatgattgca 7757654  T
Q  265 tgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||||||| ||||||||| |||| ||||| ||||||||||    
T  7757655 tgtgtagtttaggaattgataaatgaatgtagttgttgcctatg 7757698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 67 - 308
Target Start/End: Complemental strand, 8580445 - 8580204
Alignment:
Q  67 aaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaa 166  Q
    |||||| ||| || |||||||||||||||| |||   |||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||    
T  8580445 aaattctcaatttctctccaatcttcaccaaatccattttcacgaattgcaagcaaaccaagtgcacattatcacaagtaagttgtgtcaatcattttaa 8580346  T
Q  167 tcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatg 266  Q
    |  |||||||||||||||||||||||       | |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  8580345 tgttaatgttaatttgtttaggttgattttttaaaaaaaattagagtagtttgtatgtggttagggttgatttcaaaattgacaatttgatgattgcatg 8580246  T
Q  267 tgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    ||||||||||||||||||||||||| ||||| ||||||||||    
T  8580245 tgtagtttagaaattgataattgaatgtagttgttgcctatg 8580204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 15 - 308
Target Start/End: Complemental strand, 14681 - 14388
Alignment:
Q  15 tgaactaaaccagaaagcagaaccagacttccccattttccaaaact-tcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaat 113  Q
    ||||||||||||||| |||||||||||  | ||||||| |||||||  |  |||||||| ||| || ||||||||||||| || |||   ||||||||||    
T  14681 tgaactaaaccagaacgcagaaccagaacttcccattt-ccaaaacaatttcaaaattctcaatttctctccaatcttcaacaaatccattttcacgaat 14583  T
Q  114 tgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagt 213  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||       | ||||||||||||    
T  14582 tgcaagcaaatcaagtgcacattatcacaagtaagttgtgtcaatcattttaatgttaatgttaatttgtttaggttgattttttaaaaaaaattagagt 14483  T
Q  214 agtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| | || ||||| ||||||||||    
T  14482 agtttgtatgtggttagggttgatttcaaaattgaaaatttgatgattgcatgcgtagtttaggaattgataaataaatgtagttgttgcctatg 14388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 65 - 307
Target Start/End: Original strand, 28876774 - 28877016
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||| ||| || |||||||||||| ||| |||   |||||||||||||||||||||||| ||  |||||||| |||||||||||||||||||||||    
T  28876774 caaaattctcaatttctctccaatcttccccaaatccattttcacgaattgcaagcaaatcaagtggccattatcacaagtaagttgtgtcaatcatttt 28876873  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    |||  |||||||||||||||||||||||       | |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  28876874 aatgttaatgttaatttgtttaggttgatttttttaaaaaaattagagtagtttgtatgtggttagggttgaattcaaaattgagaatttgatgattgca 28876973  T
Q  265 tgtgtagtttagaaattgataattgaaggtagtggttgcctat 307  Q
    |||||||||||||||||||||||| || ||||| |||||||||    
T  28876974 tgtgtagtttagaaattgataattaaatgtagttgttgcctat 28877016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 104 - 308
Target Start/End: Complemental strand, 19228575 - 19228371
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaa 203  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||||| |         ||    
T  19228575 tttcacgaattgcaagcaaatcaactgcacattatcacaagtaagttgtatcaatcattttaatgataatgttagtttgtttaggtttattttttttaaa 19228476  T
Q  204 aaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgc 303  Q
    ||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||  ||||||||| |||| ||||| |||||    
T  19228475 aaaatatagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgattgcatgtgtagtttatgaattgataaatgaatgtagttgttgc 19228376  T
Q  304 ctatg 308  Q
    |||||    
T  19228375 ctatg 19228371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 65 - 308
Target Start/End: Complemental strand, 512714 - 512471
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||| ||| |||||| | |||||||||||||| | |   ||||| ||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||    
T  512714 caaacttctcaaattctttccaatcttcaccaaagccattttcatgaattgcaagcaaatcaactgtacattatcacaagtaagttgtatcaatcatttt 512615  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    ||| ||||||||| |||||||||||| |       | ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  512614 aatgataatgttagtttgtttaggtttatttttaaaaaaaaaatagagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgattgca 512515  T
Q  265 tgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||||||  ||||||||| |||| ||||| |||| |||||    
T  512514 tgtgtagtttatgaattgataaatgaatgtagttgttgtctatg 512471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 111 - 310
Target Start/End: Complemental strand, 42942383 - 42942183
Alignment:
Q  111 aattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaaaaa-tta 209  Q
    |||||||||||||||||| ||||||||||| ||||||||||  |||||||||||||| ||||||||| |||||||||||| |       | ||||| |||    
T  42942383 aattgcaagcaaatcaaccgcacattatcacaagtaagttgcatcaatcattttaatgataatgttagtttgtttaggtttattttttaaaaaaaaatta 42942284  T
Q  210 gagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatgc 309  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||| |||| ||||| |||||||||||    
T  42942283 gagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgattgcatgtgtagtttaggaattgataaatgaatgtagttgttgcctatgc 42942184  T
Q  310 t 310  Q
    |    
T  42942183 t 42942183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 104 - 308
Target Start/End: Original strand, 38968265 - 38968471
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaa 203  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| |||||| |||||         | ||    
T  38968265 tttcacgaattgcaagcaaatcaactgcacattatcacaagtaagttgtatcaatcattttaatgataatgttagtttgttaaggtttctttttaaaaaa 38968364  T
Q  204 aa--attagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggtt 301  Q
    ||  ||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||  ||||||||| |||| ||||| |||    
T  38968365 aaaaattagagtagtttgcatgtggttagggtttattttaaaattgacaatttgatgattgcatgtgtagtttatgaattgataaatgaatgtagttgtt 38968464  T
Q  302 gcctatg 308  Q
    |||||||    
T  38968465 gcctatg 38968471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 108 - 308
Target Start/End: Original strand, 42537317 - 42537523
Alignment:
Q  108 acgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaaaa-- 205  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||||||||  |||||||||||| |       | ||||      
T  42537317 acgaattgcaagcaaatcaactgcacattatcacaagcaagttgtatcaatcattttaatgataatgttggtttgtttaggtttattttaaaaaaaaaat 42537416  T
Q  206 ----attagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggtt 301  Q
        ||||||||||||||||||| ||||||||| |||| |||||||| ||||||||||||||||||||||||||  ||||||||| |||| ||||| |||    
T  42537417 aaaaattagagtagtttgcatgttgttagggttaattttaaaattgacaatttgatgattgcatgtgtagtttatgaattgataaatgaatgtagttgtt 42537516  T
Q  302 gcctatg 308  Q
    |||||||    
T  42537517 gcctatg 42537523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 65 - 308
Target Start/End: Complemental strand, 28241740 - 28241498
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||| |||||| |||||||||||||||| |||   |||||||||||||||||||||||| |||||||||||| |||||||||||  ||||||||||    
T  28241740 caaaattctcaaattctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcacattatcacaagtaagttgtaccaatcatttt 28241641  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    |||  ||||||||||||||||| ||| |       | ||||||| |||||||||||||||||||||| || ||     |||||| ||||| || ||||||    
T  28241640 aatgttaatgttaatttgtttatgttaagtttttaaaaaaaatt-gagtagtttgcatgtggttaggttttataaatgaattgacaatttcatcattgca 28241542  T
Q  265 tgtgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||||||   |||||||| |||| ||||  ||||||||||    
T  28241541 tgtgtagtttatgtattgataaatgaatgtagatgttgcctatg 28241498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 308
Target Start/End: Complemental strand, 8702126 - 8701923
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaa 203  Q
    ||||||||||||||||  ||||| |  |||||||||| ||||||||  | | |||||||  |||| ||||||||||||||||||||| |       | ||    
T  8702126 tttcacgaattgcaagttaatcatccccacattatcacaagtaagtactattaatcattgcaatcttaatgttaatttgtttaggttaagtttttaa-aa 8702028  T
Q  204 aaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgc 303  Q
    ||||| |||||||||||||||||||||| || ||     |||||| ||||||||||||||||||||||||||  ||||||||| |||| ||||| |||||    
T  8702027 aaatttgagtagtttgcatgtggttaggttttataaatgaattgacaatttgatgattgcatgtgtagtttatgaattgataaatgaatgtagtagttgc 8701928  T
Q  304 ctatg 308  Q
     ||||    
T  8701927 atatg 8701923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 210 - 310
Target Start/End: Complemental strand, 40624720 - 40624621
Alignment:
Q  210 gagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcctatgc 309  Q
    |||||||||||||||| |||||||| |||| |||||||| ||||||||||||||||||||| ||||  ||||||||| |||| ||||| |||||||||||    
T  40624720 gagtagtttgcatgtg-ttagggttaattttaaaattgacaatttgatgattgcatgtgtattttatgaattgataaatgaatgtagttgttgcctatgc 40624622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 28880277 - 28880202
Alignment:
Q  53 tccaaaacttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaac 128  Q
    |||||||||||||||||||| ||| ||||||||||||||| ||| ||||| |||||||||||||| ||||||||||    
T  28880277 tccaaaacttcacaaaattctcaatttttctccaatcttcgccaaatcttatttcacgaattgcatgcaaatcaac 28880202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 308
Target Start/End: Original strand, 20422210 - 20422313
Alignment:
Q  205 aattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgcc 304  Q
    |||| |||||||||||||||||||||||||||| |   |||||| ||||||||||||| ||||||||| ||  ||||||||| |||| ||||| |||| |    
T  20422210 aatttgagtagtttgcatgtggttagggttgatgtaggaattgacaatttgatgattggatgtgtagtgtatgaattgataaatgaatgtagttgttgtc 20422309  T
Q  305 tatg 308  Q
    ||||    
T  20422310 tatg 20422313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 30708859 - 30708778
Alignment:
Q  53 tccaaaacttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcaca 134  Q
    |||||||||| ||||||||| ||| || |||||||||||| ||| |||||||||||||||||| | |||||||||| |||||    
T  30708859 tccaaaactttacaaaattctcaatttctctccaatcttcgccaaatcttctttcacgaattggaggcaaatcaacggcaca 30708778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 308
Target Start/End: Original strand, 17658493 - 17658696
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaa 203  Q
    ||||||||||||||||  ||||| |  |||||||||| | ||||||    | |||||||  |||  ||||||||||||||||||||| |       | ||    
T  17658493 tttcacgaattgcaagacaatcatccccacattatcacaggtaagtaccattaatcattgcaatgttaatgttaatttgtttaggttaagtttttta-aa 17658591  T
Q  204 aaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgc 303  Q
    ||||| |||||||||| ||||||||||| |||||     |||||| ||||| || |||||||||||||||||   |||||||| |||| ||||| || ||    
T  17658592 aaatttgagtagtttgtatgtggttaggtttgataaatgaattgacaatttcatcattgcatgtgtagtttatttattgataaatgaatgtagttgtggc 17658691  T
Q  304 ctatg 308  Q
    |||||    
T  17658692 ctatg 17658696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 19037601 - 19037670
Alignment:
Q  59 acttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaac 128  Q
    |||||||||| ||| ||| || |||| |||||||  ||  |||||||||||||||||| |||||||||||    
T  19037601 acttcacaaagttctcaagttctctcaaatcttcgtcaattcttctttcacgaattgcgagcaaatcaac 19037670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 67 - 308
Target Start/End: Original strand, 7551 - 7792
Alignment:
Q  67 aaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaa 166  Q
    |||||| ||| || |||||||||||||||| |||   |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  7551 aaattctcaatttctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcacattatcacaagtaagttgtgtcaatcattttaa 7650  T
Q  167 tcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatg 266  Q
    |  |||||||||||||||||||||||       | |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  7651 tgttaatgttaatttgtttaggttgatttttttaaaaaaattagagtagtttgtatgtggttagggttgatttcaaaattgacaatttgatgattgcatg 7750  T
Q  267 tgtagtttagaaattgataattgaaggtagtggttgcctatg 308  Q
    |||||||||| ||||||||| |||| ||||| ||||||||||    
T  7751 tgtagtttaggaattgataaatgaatgtagttgttgcctatg 7792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 104 - 308
Target Start/End: Complemental strand, 625 - 427
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaa 203  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||      |||||||||||||||||||         ||    
T  625 tttcacgaattgcaagcaaatcaagtgcacattatcacaagtaagttgtgtcaatcattttaat------gttaatttgtttaggttgattttttttaaa 532  T
Q  204 aaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgc 303  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  531 aaattagagtagtttgtatgtggttagggttgatttcaaaattgacaatttgatgattgcatgtgtagtttagaaattgataattgaatgtagttgttgc 432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 104 - 308
Target Start/End: Original strand, 8374 - 8577
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaa 203  Q
    |||| ||||||||||||||||||||  |||||||||| ||||||||||  ||||| |||||||| ||||||||| |||||||||||| |       | ||    
T  8374 tttcgcgaattgcaagcaaatcaaccacacattatcacaagtaagttgcatcaattattttaatgataatgttagtttgtttaggtttaatttttaa-aa 8472  T
Q  204 aaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggttgc 303  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||  ||||||||| |||| ||||| |||||    
T  8473 aaattagagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgattgcatgtatagtttatgaattgataaatgaatgtagttgttgc 8572  T
Q  304 ctatg 308  Q
    |||||    
T  8573 ctatg 8577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 104 - 308
Target Start/End: Complemental strand, 24088687 - 24088481
Alignment:
Q  104 tttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttgannnnnnnagaa 203  Q
    ||||||||||||||||||||||||| ||| ||||||| || |||||||| |||||||||||||| ||||||||| |||||||||||| |       | ||    
T  24088687 tttcacgaattgcaagcaaatcaaccgcaaattatcacaaataagttgtatcaatcattttaatgataatgttagtttgtttaggtttatttttaaaaaa 24088588  T
Q  204 aaat--tagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggtt 301  Q
    |||   ||||||||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||||||||  ||||||||| |||| ||||| |||    
T  24088587 aaaaaatagagtagtttgcatgtggttagtgttgattttaaaattgacaatttgataattgcatgtgtagtttatgaattgataaatgaatgtagttgtt 24088488  T
Q  302 gcctatg 308  Q
    | |||||    
T  24088487 gtctatg 24088481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 111 - 308
Target Start/End: Original strand, 31768877 - 31769079
Alignment:
Q  111 aattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcattttaatcataatgttaatttgtttaggttga-nnnnnnnagaaaaatta 209  Q
    ||||||||||||||  | |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||          ||||||||    
T  31768877 aattgcaagcaaatagattgcacattatcacaagtaagttgtgtcaatcattttaatgataatgttaatttgtttaggttgattttttttttaaaaatta 31768976  T
Q  210 gagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatga----ttgcatgtgtagtttagaaattgataattgaaggtagtggttgcct 305  Q
    |||||||||||||||||||||||||||||| ||||| || ||||||||||    |||||||||| |||||| |||||| || |||| ||||| ||||| |    
T  31768977 gagtagtttgcatgtggttagggttgattttaaaatcgacaatttgatgattgcttgcatgtgtggtttaggaattgacaaatgaatgtagttgttgctt 31769076  T
Q  306 atg 308  Q
    |||    
T  31769077 atg 31769079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 6320368 - 6320262
Alignment:
Q  202 aaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagtggtt 301  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||  ||||||||| |||| ||||| |||    
T  6320368 aaaaattagagtagtttgcatgtggttagggttgattttaaaattgacaatttgatgattgcatgtgtagtttatgaattgataaatgaatgtagttgtt 6320269  T
Q  302 gcctatg 308  Q
    |||||||    
T  6320268 gcctatg 6320262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 6320470 - 6320371
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||| ||| |||||| | |||||||||||||| | |   ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  6320470 caaacttctcaaattctttccaatcttcaccaaagccattttcacgaattgcaagcaaatcaactgcacattatcacaagtaagttgtatcaatcatttt 6320371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 22305051 - 22304976
Alignment:
Q  53 tccaaaacttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaac 128  Q
    |||||||||||||||| | | ||| || |||| ||||||| ||| ||||||||||||||||||| |||||||||||    
T  22305051 tccaaaacttcacaaactactcaatttctctcaaatcttcgccaaatcttctttcacgaattgcgagcaaatcaac 22304976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 124
Target Start/End: Complemental strand, 27639526 - 27639455
Alignment:
Q  53 tccaaaacttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaat 124  Q
    |||||||||||||||||||| ||| || |||| |||||||  ||  |||||||||||||||||| |||||||    
T  27639526 tccaaaacttcacaaaattctcaagttctctcaaatcttcgtcaattcttctttcacgaattgcgagcaaat 27639455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 6204769 - 6204700
Alignment:
Q  59 acttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaac 128  Q
    |||||||||| ||| ||| || |||| ||||||| |||  |||||||||||||||||| |||||||||||    
T  6204769 acttcacaaagttctcaagttctctcaaatcttcgccaattcttctttcacgaattgcgagcaaatcaac 6204700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 11691736 - 11691667
Alignment:
Q  59 acttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaac 128  Q
    |||||||||| ||| ||| || |||| ||||||| |||  |||||||||||||||||| |||||||||||    
T  11691736 acttcacaaagttctcaagttctctcaaatcttcgccaattcttctttcacgaattgcgagcaaatcaac 11691667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 297
Target Start/End: Complemental strand, 30424228 - 30424144
Alignment:
Q  213 tagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgcatgtgtagtttagaaattgataattgaaggtagt 297  Q
    |||| ||||||||||||| ||| || |   |||||| | |||||||||||||||| |||||||| ||||||||| |||| |||||    
T  30424228 tagtgtgcatgtggttagagtttatgtatgaattgacattttgatgattgcatgtatagtttaggaattgataaatgaatgtagt 30424144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 51 - 191
Target Start/End: Complemental strand, 18251 - 18111
Alignment:
Q  51 tttccaaaacttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagtt 150  Q
    ||||||||| ||  |||||||||||| || |||||||||||||||| |||   |||||||||||||||||||||||| |||||||||||| |||||||||    
T  18251 tttccaaaatttttcaaaattcacaatttctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcacattatcacaagtaagtt 18152  T
Q  151 gtgtcaatcattttaatcataatgttaatttgtttaggttg 191  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  18151 gtgtcaatcattttaatgataatgttaatttgtttaggttg 18111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 51 - 191
Target Start/End: Original strand, 54593 - 54733
Alignment:
Q  51 tttccaaaacttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagtt 150  Q
    ||||||||| ||  |||||||||||| || |||||||||||||||| |||   |||||||||||||||||||||||| |||||||||||| |||||||||    
T  54593 tttccaaaatttttcaaaattcacaatttctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcacattatcacaagtaagtt 54692  T
Q  151 gtgtcaatcattttaatcataatgttaatttgtttaggttg 191  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  54693 gtgtcaatcattttaatgataatgttaatttgtttaggttg 54733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 65 - 296
Target Start/End: Complemental strand, 40976 - 40746
Alignment:
Q  65 caaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaactgcacattatcataagtaagttgtgtcaatcatttt 164  Q
    |||||||| ||| || |||||||||||||||| |||   |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  40976 caaaattctcaatttctctccaatcttcaccaaatccattttcacgaattgcaagcaaatcaagtgcacattatcacaagtaagttgtgtcaatcatttt 40877  T
Q  165 aatcataatgttaatttgtttaggttgannnnnnnagaaaaattagagtagtttgcatgtggttagggttgatttcaaaattgagaatttgatgattgca 264  Q
    |||  ||||||||||||||||| ||| |       | ||||||| |||||||||||||||||||||| || ||     |||||| ||||| || ||||||    
T  40876 aatgttaatgttaatttgtttatgttaagttttttaaaaaaatt-gagtagtttgcatgtggttaggttttataaatgaattgacaatttcatcattgca 40778  T
Q  265 tgtgtagtttagaaattgataattgaaggtag 296  Q
    |||||||||||   |||||||| |||| ||||    
T  40777 tgtgtagtttatgtattgataaatgaatgtag 40746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 36664 - 36739
Alignment:
Q  53 tccaaaacttcacaaaattcacaaattttctccaatcttcaccatatcttctttcacgaattgcaagcaaatcaac 128  Q
    |||||||||||||||||||| ||| || |||| ||||| | ||| ||||||||||||||||||| |||||||||||    
T  36664 tccaaaacttcacaaaattctcaatttctctcaaatctccgccaaatcttctttcacgaattgcgagcaaatcaac 36739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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