View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21377_high_6 (Length: 238)
Name: NF21377_high_6
Description: NF21377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21377_high_6 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 36892864 - 36892644
Alignment:
| Q |
18 |
ttgaatgcttaatcattctcaaggtctcaacaataagaggttgcctgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36892864 |
ttgaatgcttaatcattctcaaggtctcaacaataagaggttgcctgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaat |
36892765 |
T |
|
| Q |
118 |
ggcacttggtatttttattggaatttcgttaaccatttcaactattccattttttgctgcaaccaaaaatggtgtcatctttttcttgatttccttttca |
217 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36892764 |
ggcacttggtacttttattagaatttcgttaaccatttcaactattccattttttgctgcaaccaaaaatggtgtcatctttttcttgatttccttttca |
36892665 |
T |
|
| Q |
218 |
ttgtccttctttatttcattt |
238 |
Q |
| |
|
|| |||||||||||||||||| |
|
|
| T |
36892664 |
ttttccttctttatttcattt |
36892644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 36881762 - 36881599
Alignment:
| Q |
30 |
tcattctcaaggtctcaacaataagaggttgcctgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtat |
129 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| || | || ||||||||| |||||||||||||||| |||||| | |||| ||||||||||||||| || |
|
|
| T |
36881762 |
tcattctcaatgtctcaacaataacgggttgtcttgacttcactgcaacatgcaatacattttctttccttgagtttgtgtcatgaatggcacttggaat |
36881663 |
T |
|
| Q |
130 |
ttttattggaatttcgttaaccatttcaactattccattttttgctgcaaccaaaaatggtgtc |
193 |
Q |
| |
|
||| | ||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36881662 |
tttgtctagaaattcgttaaccagttcaactattccatttttcgctgcaaccaaaaatggtgtc |
36881599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 61 - 191
Target Start/End: Complemental strand, 36901846 - 36901716
Alignment:
| Q |
61 |
cctgtatttgactgcaacaagcaatacattttcttttcttgaggtagtgttatgaatggcacttggtatttttattggaatttcgttaaccatttcaact |
160 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||| |||||| |||| || | | |||| ||||| || ||| ||||||| || ||||||||| | |
|
|
| T |
36901846 |
cctgtattctactgcaacaagcaatacattttgtttgcttgagttagtactacggagggcagttggtgcttcgattagaatttctttcaccatttcatat |
36901747 |
T |
|
| Q |
161 |
attccattttttgctgcaaccaaaaatggtg |
191 |
Q |
| |
|
|| |||||| | ||||||||||||| ||||| |
|
|
| T |
36901746 |
atgccatttctagctgcaaccaaaattggtg |
36901716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University