View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21377_low_1 (Length: 803)
Name: NF21377_low_1
Description: NF21377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21377_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 684; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 1 - 796
Target Start/End: Complemental strand, 4818412 - 4817611
Alignment:
| Q |
1 |
tagcagcacgaactggggacacaattccgttgttgtttgtgacactgatcctagcagcttgttgtaggtgagcttctgagtcaacctctgagcaatcttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4818412 |
tagcagcacgaactggggacacaattccgttgttgtttgtgacactgatcctagcagcttgttgtaggtgagcttctgagtcaacctctgagcaatcttt |
4818313 |
T |
|
| Q |
101 |
ccttggactcttgcaaagaataacttcacatgtttcatcttcatggtctccatctatctccacactgtattttcctgatttatctgttgttgcttctttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4818312 |
ccttggactcttgcaaagaataacttcacatgtttcatcttcatggtctccatctatctccacactgtattttcctgatttatctgttgttgcttctttg |
4818213 |
T |
|
| Q |
201 |
ttgaatgtcaatgttccattatcttctttgcattccacacgcaccgttgcaccttcattac--atatggccacacaaattattatttatatatgtcaagt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
4818212 |
ttgaatgtcaatgttccattatcttctttgcattccacacgcaccgttgcaccttcattacatatatggccacacaaattattatttatatatgtcaatt |
4818113 |
T |
|
| Q |
299 |
tgcaagacattcgatatgctaaggcacaagttagaactcctaattctccacttcttagtaataaatgtgtgtgagtttcatcgttagactc-tttnnnnn |
397 |
Q |
| |
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||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4818112 |
tgcaagacattggatatgctaaggcacgagttagaactcctaattctccgcttcttagtaataaatgtgtgtgagtttcatcgttagactcttttaaaaa |
4818013 |
T |
|
| Q |
398 |
nntaataatcaatagtcttaatttcacttttaggt---atcatgaggcacagactatacagacactagacacgacataacatgtgaacatcgataataat |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
4818012 |
aataataatcaatagtcttaatttcacttttaggtatcatcatgaggcacagactatacagacactagacacgacatgacatgtgaacatcgataataat |
4817913 |
T |
|
| Q |
495 |
ttaagaaaatgacatatatgtgacggtgtgtgttggtatcgaacactatatatatttgataccggaacacacataattcaataagtatatgtgcttcata |
594 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||| ||||||| ||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
4817912 |
ttaagaaattgacatatatgtgacagtgtgtgttggtgtcgaacatgatacatatttgataccggaacacgcataattcaatgagtatatgtgcttcata |
4817813 |
T |
|
| Q |
595 |
gattcatgttaaaaaatatgcgcgtaccttcaatgaactcggtcaatctggtgatgaattgggtgcgacatgtgtcacagtaaacaacaccttctacaaa |
694 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4817812 |
gattcatgttaaaaaatatgtacgtaccttcaatgaactcggtcaatctggtgatgaattgggtgcgacatgtgtcacagtaaacaacaccttctacaaa |
4817713 |
T |
|
| Q |
695 |
gaagcgatcagacttggaataagccgaacctaagaaggataaaaagcaaagggtgaagacaagggggattgtagactttgccattgttcttgatattctt |
794 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4817712 |
gaagcgatcagacttggaataagccgaacctaagaaggataaaaagcaaagggtgaagacaagggggattgtagactttgccattgttcttgatattgtt |
4817613 |
T |
|
| Q |
795 |
gg |
796 |
Q |
| |
|
|| |
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|
| T |
4817612 |
gg |
4817611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 510
Target Start/End: Original strand, 18622416 - 18622445
Alignment:
| Q |
481 |
acatcgataataatttaagaaaatgacata |
510 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
18622416 |
acatcgataataatttaagaaaatgacata |
18622445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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