View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21377_low_5 (Length: 329)
Name: NF21377_low_5
Description: NF21377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21377_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 10 - 293
Target Start/End: Original strand, 42209315 - 42209597
Alignment:
| Q |
10 |
aagaatatatgtttgtaatcctcttaggnnnnnnntaccataaaaatagttacgcgacaaatttgtaattttgattgatccattatggatccaaagacta |
109 |
Q |
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| T |
42209315 |
aagaaaatatgtttgtaatcctcttaggaaaaaaataccataaaaatagttacgcgacaaatttgtaattttgattgatccattatggatccaaagacta |
42209414 |
T |
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| Q |
110 |
tatagtcttgactcaagcatcttgaaattgatcgtcgcacttagggccatgaccaccagcgcaccactccccgtattcctcttcgaacaccactgcttcc |
209 |
Q |
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| T |
42209415 |
tatagtcttgactcaagcatcttgaaattgatcgtcgcacttagggccatgaccaccagcgcaccactccccgtattcctcttcgaacatcactgcttcc |
42209514 |
T |
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| Q |
210 |
ttatcttccattgatataataggatgagaattgttatccatgtctttcgtatcacatatatcaatccatttagtttgttcatgg |
293 |
Q |
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| T |
42209515 |
ttatcttccattgatataataggatgagaattgttatccatgtctttcgtatcacatatatcaatccattt-gtttgttcatgg |
42209597 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 19072732 - 19072774
Alignment:
| Q |
100 |
ccaaagactatatagtcttgactcaagcatcttgaaattgatc |
142 |
Q |
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| T |
19072732 |
ccaaagaccatatagtcttgactaaagcatcttgaaattgatc |
19072774 |
T |
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