View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21377_low_7 (Length: 261)
Name: NF21377_low_7
Description: NF21377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21377_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 58 - 230
Target Start/End: Complemental strand, 40208750 - 40208578
Alignment:
| Q |
58 |
gtgtaatattgtgcatggctagtttcttcaaacttcagcacttnnnnnnnnnnnnnnntacgatcatcaccaatcaccaccaagttaccgttcctcttgt |
157 |
Q |
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| T |
40208750 |
gtgtaatattgtgcatggctagtttcttcaaacttcagcacttcacacacacacacactacgatcatcaccaatcaccaccaagttaccgttcctcttgt |
40208651 |
T |
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| Q |
158 |
tgatcacgttgatcacgagacgataaccgaaaaacccacttagtgagtaaatttctctttgtgctttttgttg |
230 |
Q |
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| T |
40208650 |
tgatcacgttgatcacgagacgataaccgaaaaacccacttagtgagtaaatttctctttgtgctttttgttg |
40208578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 40208807 - 40208775
Alignment:
| Q |
1 |
gaactactcctccaagaaataactggggagtgc |
33 |
Q |
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| T |
40208807 |
gaactactcctccaagaaataactggggagtgc |
40208775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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