View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21378_high_1 (Length: 271)
Name: NF21378_high_1
Description: NF21378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21378_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 243188 - 242946
Alignment:
| Q |
17 |
gatgtgaccttaatgtatcctaaacaaaataacgaaataaatcaaatacaagggtaataacagaaaaatccaacttgttactacatctttttatttgctt |
116 |
Q |
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| T |
243188 |
gatgtgaccttaatgtatcctaaacaaaataacaaaataaatcaaatacaagggtaataacagaaaaatccaacttgttactacatctttttatttgctt |
243089 |
T |
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| Q |
117 |
ttaataatgattataaaaaatgaactgtgatatgttaccattatgtcgtaaataaccatagcgtaagtgctagcaagagctatgtttcccattgaagtta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
243088 |
ttaataatgattataaaaaatgaactgtgatatgttaccattatgtcgtaaataaccatagcgtaagtgctagcaagagctatgtttcccattgaagtta |
242989 |
T |
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| Q |
217 |
aaacactccaaactttatctgcaacagatagttttggccctat |
259 |
Q |
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| T |
242988 |
aaacactccaaactttatctgcaacagatagttctggccctat |
242946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 222086 - 222321
Alignment:
| Q |
17 |
gatgtgaccttaatgtatcctaaacaaaataacgaaataaatcaaatacaagggtaataacagaaaaatccaacttgttactacatctttttatttgctt |
116 |
Q |
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|||||||| |||||||||||||||||||| || | || ||||||||||||||||||||||| |||||||||||||||||||| ||| ||| || |
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| T |
222086 |
gatgtgactttaatgtatcctaaacaaaacaatggaa-aaatcaaatacaagggtaataactgaaaaatccaacttgttactgcataatttcataa---- |
222180 |
T |
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| Q |
117 |
ttaataatgattataaaaaatgaactgtgatatgttaccattatgtcgtaaataaccatagcgtaagtgctagcaagagctatgtttcccattgaagtta |
216 |
Q |
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| T |
222181 |
--aataatgattatagtaagtgaattgtggtagtttaccattatgtcgtaaataacagtagcataagtgctagcaagagctatgtttcccattgaagtgc |
222278 |
T |
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| Q |
217 |
aaacactccaaactttatctgcaacagatagttttggccctat |
259 |
Q |
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| T |
222279 |
aaacacgccacactttctctgcagcagttagttctggccctat |
222321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 12030141 - 12030211
Alignment:
| Q |
142 |
tgtgatatgttaccattatgtcgtaaataaccatagcgtaagtgctagcaagagctatgtttcccattgaa |
212 |
Q |
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|||||| | |||||||||||||||||||||| |||| ||||||| |||||| |||||||||||||||||| |
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| T |
12030141 |
tgtgattttttaccattatgtcgtaaataacagtagcataagtgcaagcaagtgctatgtttcccattgaa |
12030211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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