View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21378_high_2 (Length: 257)

Name: NF21378_high_2
Description: NF21378
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21378_high_2
NF21378_high_2
[»] chr8 (24 HSPs)
chr8 (19-235)||(27119789-27120005)
chr8 (62-176)||(26479822-26479936)
chr8 (62-133)||(6950359-6950430)
chr8 (63-133)||(14949904-14949974)
chr8 (64-129)||(32840951-32841017)
chr8 (65-130)||(11188120-11188185)
chr8 (64-133)||(11770973-11771042)
chr8 (63-175)||(4560540-4560652)
chr8 (62-114)||(8255429-8255481)
chr8 (62-133)||(30918150-30918220)
chr8 (62-112)||(11183582-11183632)
chr8 (62-96)||(25869265-25869299)
chr8 (67-176)||(778431-778540)
chr8 (64-129)||(779027-779092)
chr8 (62-135)||(13000384-13000457)
chr8 (64-93)||(26284797-26284826)
chr8 (62-135)||(30191101-30191174)
chr8 (62-135)||(43504788-43504861)
chr8 (102-166)||(2364389-2364453)
chr8 (88-176)||(2487927-2488015)
chr8 (88-136)||(2833312-2833360)
chr8 (64-112)||(8066753-8066801)
chr8 (116-176)||(37353091-37353151)
chr8 (88-176)||(43368619-43368707)
[»] chr7 (14 HSPs)
chr7 (62-174)||(12234810-12234922)
chr7 (64-134)||(25670547-25670617)
chr7 (64-176)||(34035956-34036068)
chr7 (63-135)||(33894665-33894737)
chr7 (62-136)||(4966193-4966267)
chr7 (62-135)||(33645920-33645994)
chr7 (64-112)||(46082075-46082123)
chr7 (63-134)||(12242282-12242353)
chr7 (62-133)||(48157082-48157153)
chr7 (118-176)||(30751612-30751670)
chr7 (62-95)||(24363601-24363634)
chr7 (63-96)||(25797023-25797056)
chr7 (69-114)||(28520993-28521038)
chr7 (62-135)||(34754770-34754843)
[»] scaffold0311 (1 HSPs)
scaffold0311 (62-137)||(10575-10650)
[»] chr2 (19 HSPs)
chr2 (67-174)||(40158760-40158867)
chr2 (64-137)||(44606068-44606141)
chr2 (66-178)||(787373-787485)
chr2 (68-135)||(5902509-5902576)
chr2 (63-112)||(43065433-43065482)
chr2 (62-135)||(43456667-43456740)
chr2 (67-135)||(43199744-43199812)
chr2 (74-176)||(22878147-22878249)
chr2 (62-128)||(28677626-28677692)
chr2 (62-92)||(41032958-41032988)
chr2 (66-135)||(7283037-7283106)
chr2 (64-129)||(11063527-11063592)
chr2 (62-95)||(14300427-14300460)
chr2 (64-105)||(30538163-30538204)
chr2 (62-135)||(41809205-41809278)
chr2 (62-94)||(1160741-1160773)
chr2 (64-112)||(9556278-9556326)
chr2 (63-135)||(9878642-9878714)
chr2 (103-135)||(41170688-41170720)
[»] chr6 (25 HSPs)
chr6 (62-137)||(281806-281881)
chr6 (62-137)||(2460109-2460184)
chr6 (62-112)||(20377903-20377953)
chr6 (62-135)||(33498656-33498729)
chr6 (64-176)||(33089545-33089657)
chr6 (60-135)||(7931686-7931761)
chr6 (62-112)||(3217173-3217223)
chr6 (62-96)||(7785743-7785777)
chr6 (64-114)||(33832254-33832304)
chr6 (63-112)||(1669781-1669830)
chr6 (64-133)||(8364938-8365007)
chr6 (67-135)||(769180-769248)
chr6 (67-135)||(2732207-2732275)
chr6 (71-135)||(28660720-28660784)
chr6 (67-135)||(30863288-30863356)
chr6 (62-130)||(31583716-31583784)
chr6 (62-96)||(3155212-3155246)
chr6 (62-152)||(10031769-10031859)
chr6 (62-96)||(27909637-27909671)
chr6 (63-133)||(31958546-31958616)
chr6 (62-176)||(33788002-33788115)
chr6 (64-125)||(9027617-9027678)
chr6 (88-133)||(26559201-26559246)
chr6 (62-135)||(28088183-28088255)
chr6 (62-135)||(31564653-31564728)
[»] chr3 (32 HSPs)
chr3 (64-163)||(41724251-41724350)
chr3 (65-172)||(24624250-24624357)
chr3 (63-178)||(36646299-36646414)
chr3 (62-131)||(37273171-37273240)
chr3 (62-135)||(43115093-43115166)
chr3 (55-133)||(40122715-40122793)
chr3 (66-134)||(34707457-34707525)
chr3 (64-124)||(47249457-47249517)
chr3 (64-128)||(50600145-50600209)
chr3 (66-133)||(11039301-11039368)
chr3 (64-95)||(16990161-16990192)
chr3 (62-137)||(26542574-26542649)
chr3 (62-133)||(27290863-27290934)
chr3 (62-105)||(36200133-36200176)
chr3 (64-99)||(41671349-41671384)
chr3 (82-176)||(21872214-21872308)
chr3 (65-135)||(45541611-45541681)
chr3 (62-112)||(48048965-48049015)
chr3 (62-135)||(11253538-11253611)
chr3 (63-176)||(20210847-20210960)
chr3 (62-176)||(21574527-21574643)
chr3 (107-177)||(25129960-25130034)
chr3 (63-96)||(30923897-30923930)
chr3 (59-96)||(51278174-51278211)
chr3 (64-129)||(54837000-54837065)
chr3 (64-176)||(2923517-2923629)
chr3 (64-112)||(3015826-3015874)
chr3 (64-96)||(12923324-12923356)
chr3 (60-124)||(29427616-29427680)
chr3 (64-96)||(41633399-41633431)
chr3 (60-96)||(42039197-42039233)
chr3 (64-112)||(51130789-51130837)
[»] chr4 (22 HSPs)
chr4 (64-178)||(39178183-39178297)
chr4 (62-135)||(50799990-50800063)
chr4 (62-137)||(27123310-27123385)
chr4 (62-135)||(3176064-3176137)
chr4 (63-133)||(23819127-23819197)
chr4 (62-135)||(1137749-1137822)
chr4 (63-135)||(9843213-9843285)
chr4 (64-135)||(4691887-4691958)
chr4 (64-126)||(6978931-6978993)
chr4 (142-176)||(41603132-41603166)
chr4 (66-132)||(47118928-47118994)
chr4 (62-96)||(55547043-55547077)
chr4 (66-111)||(2841667-2841712)
chr4 (55-96)||(19304956-19304997)
chr4 (62-135)||(20936189-20936262)
chr4 (62-135)||(28232582-28232655)
chr4 (62-98)||(7694007-7694043)
chr4 (87-135)||(8328079-8328127)
chr4 (68-132)||(25583635-25583699)
chr4 (71-111)||(27970104-27970144)
chr4 (64-168)||(33534096-33534200)
chr4 (64-112)||(53155299-53155347)
[»] chr1 (33 HSPs)
chr1 (64-138)||(38578567-38578641)
chr1 (64-135)||(31517700-31517771)
chr1 (63-152)||(15581292-15581381)
chr1 (62-96)||(4549267-4549301)
chr1 (64-178)||(4868439-4868552)
chr1 (63-105)||(30371186-30371228)
chr1 (62-176)||(33723301-33723415)
chr1 (73-135)||(42336663-42336725)
chr1 (62-135)||(4768789-4768862)
chr1 (64-173)||(10199330-10199439)
chr1 (62-135)||(17420240-17420313)
chr1 (119-176)||(24460320-24460377)
chr1 (63-136)||(29929580-29929653)
chr1 (68-133)||(38001639-38001704)
chr1 (64-175)||(6659719-6659830)
chr1 (64-111)||(29635386-29635433)
chr1 (64-135)||(37593644-37593715)
chr1 (68-135)||(38170650-38170717)
chr1 (66-137)||(43954004-43954074)
chr1 (102-177)||(50644173-50644247)
chr1 (63-105)||(3223705-3223747)
chr1 (62-96)||(12477286-12477320)
chr1 (62-128)||(15579519-15579585)
chr1 (68-174)||(18327067-18327173)
chr1 (62-136)||(33108581-33108655)
chr1 (62-96)||(33722400-33722434)
chr1 (60-105)||(24502818-24502863)
chr1 (66-135)||(32515401-32515470)
chr1 (62-114)||(3924661-3924713)
chr1 (64-176)||(4622132-4622244)
chr1 (64-96)||(27140517-27140549)
chr1 (64-96)||(28689451-28689483)
chr1 (62-114)||(31118080-31118132)
[»] scaffold0024 (1 HSPs)
scaffold0024 (62-151)||(27613-27702)
[»] chr5 (24 HSPs)
chr5 (64-133)||(7674687-7674756)
chr5 (62-135)||(10907415-10907488)
chr5 (62-176)||(499650-499764)
chr5 (64-176)||(12459920-12460032)
chr5 (63-135)||(16457573-16457645)
chr5 (68-112)||(18700427-18700471)
chr5 (62-93)||(18704038-18704069)
chr5 (62-96)||(35963278-35963312)
chr5 (143-176)||(3280655-3280688)
chr5 (62-135)||(3618937-3619010)
chr5 (67-135)||(7907923-7907992)
chr5 (64-169)||(10125644-10125749)
chr5 (64-105)||(10272421-10272462)
chr5 (62-135)||(10391379-10391452)
chr5 (63-96)||(17369438-17369471)
chr5 (62-163)||(37611147-37611248)
chr5 (62-163)||(37787877-37787978)
chr5 (62-126)||(4619744-4619808)
chr5 (75-135)||(11457148-11457208)
chr5 (64-96)||(11707094-11707126)
chr5 (60-96)||(12930606-12930642)
chr5 (64-176)||(14331406-14331517)
chr5 (144-176)||(17368791-17368823)
chr5 (64-124)||(38766516-38766576)
[»] scaffold0153 (2 HSPs)
scaffold0153 (62-96)||(6493-6527)
scaffold0153 (62-96)||(13513-13547)
[»] scaffold0147 (1 HSPs)
scaffold0147 (67-112)||(12687-12732)


Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 27120005 - 27119789
Alignment:
Q  19 ataaagttaaactgttttcataagcnnnnnnngaatagttaacggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattc 118  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27120005 ataaagttaaactgttttcataagctttttttgaatagttaacggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattc 27119906  T
Q  119 caaacagtctcacaagtacaattgtcagtagatatgtttaaataagtcaatccaaacaagagctaaattaactagagcagttattttgtttttcaaccta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27119905 caaacagtctcacaagtacaattgtcagtagatatgtttaaataagtcaatccaaacaagagctaaattaactagagcagttattttgtttttcaaccta 27119806  T
Q  219 aattttcttgcaaaagt 235  Q
    |||||||||||||||||    
T  27119805 aattttcttgcaaaagt 27119789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 176
Target Start/End: Original strand, 26479822 - 26479936
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaat 161  Q
    ||||||| |||||||| |||||||||||||| ||| ||| |||| |||||| | |  |||| ||| |||||||| |   ||||| |||||| | ||||||    
T  26479822 ggaaatacgctgaaaaaaacttatagacatgacataagttgtttccataagctctcgcaaatagtttcacaagtccttgtgtcaatagataagcttaaat 26479921  T
Q  162 aagtcaatccaaaca 176  Q
    |||||||||||||||    
T  26479922 aagtcaatccaaaca 26479936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 6950359 - 6950430
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaa 133  Q
    |||||||||||||||||||||||| ||||||||||  || |||| |||||| | | ||||||| ||||||||    
T  6950359 ggaaataagctgaaaacaacttatcgacatgtcataggttgtttacataagctctcccaaacaatctcacaa 6950430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 14949904 - 14949974
Alignment:
Q  63 gaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaa 133  Q
    ||||||||||||||||| ||||| |||||||||| |||  |||||||||| | | | ||||||||||||||    
T  14949904 gaaataagctgaaaacagcttatggacatgtcataagttattttcataagctctcctaaacagtctcacaa 14949974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 32841017 - 32840951
Alignment:
Q  64 aaataagctgaaaacaacttatagaca-tgtcattagtggttttcataagttattccaaacagtctc 129  Q
    ||||||||||||||||||||||  ||| |||||| ||| ||||||||||||| | ||||||||||||    
T  32841017 aaataagctgaaaacaacttatgaacaatgtcataagttgttttcataagttctcccaaacagtctc 32840951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 11188185 - 11188120
Alignment:
Q  65 aataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctca 130  Q
    ||||| |||||||||| ||||||||||||||| ||  |||||||| |||||| | |||||||||||    
T  11188185 aataaactgaaaacaagttatagacatgtcataagctgttttcattagttatcctaaacagtctca 11188120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 11771042 - 11770973
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaa 133  Q
    ||||||| |||||||||| ||||||||| |||| ||| ||||||||||||| ||  ||||||||| ||||    
T  11771042 aaataagttgaaaacaacgtatagacatatcataagttgttttcataagttcttttaaacagtctaacaa 11770973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 175
Target Start/End: Original strand, 4560540 - 4560652
Alignment:
Q  63 gaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaata 162  Q
    ||||||| ||||||||| ||||  ||||||| || |||  ||| |||||||| |||||||||  ||||||||| |   ||||| |||||| | | |||||    
T  4560540 gaaataatctgaaaacagcttactgacatgttataagttatttccataagttcttccaaacaacctcacaagtgcttatgtcaatagataagctcaaata 4560639  T
Q  163 agtcaatccaaac 175  Q
    |||||||||||||    
T  4560640 agtcaatccaaac 4560652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 8255429 - 8255481
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagtt 114  Q
    ||||||||| ||||||||||||||  ||||||||||||| |||| ||||||||    
T  8255429 ggaaataaggtgaaaacaacttatgcacatgtcattagttgtttccataagtt 8255481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 30918150 - 30918220
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaa 133  Q
    |||||||||||||||||||||||| || ||||||  ||| ||||||||||| | |  |||||||||||||||    
T  30918150 ggaaataagctgaaaacaacttat-gaaatgtcacaagttgttttcataagctctctcaaacagtctcacaa 30918220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 11183582 - 11183632
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataag 112  Q
    |||||||||||||||||| ||||||||||| |||| ||| ||||| |||||    
T  11183582 ggaaataagctgaaaacagcttatagacatatcataagttgtttttataag 11183632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 25869299 - 25869265
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcat 96  Q
    |||||||||||||||||||||||| ||||||||||    
T  25869299 ggaaataagctgaaaacaacttatggacatgtcat 25869265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 778431 - 778540
Alignment:
Q  67 taagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaataagtc 166  Q
    |||| ||||||||||||| | || |||| |  || ||||||||||||| || ||||||||||||||||| |   | |||||| ||| ||  |||||||||    
T  778431 taagttgaaaacaacttacaaacgtgtcttatgttgttttcataagttcttgcaaacagtctcacaagtgcttatttcagtaaataagtacaaataagtc 778530  T
Q  167 aatccaaaca 176  Q
    || |||||||    
T  778531 aaaccaaaca 778540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 779092 - 779027
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctc 129  Q
    ||||||| ||||||||||||||  ||||||||| ||| |||||| |||||| || |||||| ||||    
T  779092 aaataagatgaaaacaacttatgaacatgtcataagttgttttcgtaagttctttcaaacaatctc 779027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 13000457 - 13000384
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    |||||||||||||||||||||| | |||||||||| ||| |||  |||||  | || |||| ||||||||||||    
T  13000457 ggaaataagctgaaaacaacttgtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaagt 13000384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 93
Target Start/End: Complemental strand, 26284826 - 26284797
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgt 93  Q
    ||||||||||||||||||||||||||||||    
T  26284826 aaataagctgaaaacaacttatagacatgt 26284797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 30191174 - 30191101
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||||||||||||||||| || |  ||||||||| ||| |||| |||||| | | ||||||||||| ||||||    
T  30191174 ggaaataagctgaaaacaagttttgaacatgtcataagttgtttccataagctctcccaaacagtctaacaagt 30191101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 43504788 - 43504861
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    |||||||||||||||||| |||||| ||| ||| | ||| |||||||| |||| | | |||||||| |||||||    
T  43504788 ggaaataagctgaaaacagcttataaacaagtcgtaagttgttttcatcagttctccgaaacagtcacacaagt 43504861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 2364453 - 2364389
Alignment:
Q  102 gttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaataagtc 166  Q
    ||||||||||  | ||||||||||||||||||||||   |||||| ||||| ||| |||||||||    
T  2364453 gttttcataatctcttccaaacagtctcacaagtacttatgtcagaagataagttcaaataagtc 2364389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 2488015 - 2487927
Alignment:
Q  88 acatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaataagtcaatccaaaca 176  Q
    |||||| || ||| ||||||||||||| | |||||||||||||||||| |   |||||||||||    | ||||||| |||||||||||    
T  2488015 acatgttataagttgttttcataagttctcccaaacagtctcacaagtgcttatgtcagtagatgaactcaaataagccaatccaaaca 2487927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 2833360 - 2833312
Alignment:
Q  88 acatgtcattagtggttttcataagttattccaaacagtctcacaagta 136  Q
    |||||| || ||| ||||||||||||||| ||||||||| |||||||||    
T  2833360 acatgtgataagttgttttcataagttatgccaaacagtatcacaagta 2833312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 8066801 - 8066753
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataag 112  Q
    |||||||||||||| ||||||| |||||||||| || | ||||||||||    
T  8066801 aaataagctgaaaaaaacttatggacatgtcatcagcgattttcataag 8066753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 37353151 - 37353091
Alignment:
Q  116 ttccaaacagtctcacaagtacaattgtcagtagatatgtttaaataagtcaatccaaaca 176  Q
    |||||||||||||||||||| |   |||||||||||| ||| | ||||||| |||||||||    
T  37353151 ttccaaacagtctcacaagtgcttatgtcagtagataggttcagataagtcgatccaaaca 37353091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 43368707 - 43368619
Alignment:
Q  88 acatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaataagtcaatccaaaca 176  Q
    ||||||||| ||| ||||||||||| | || ||| ||||||||||| | |   ||| |||||||| | | |||||||||||||||||||    
T  43368707 acatgtcataagttgttttcataagctgttacaaccagtctcacaaatgcttatgttagtagataagatcaaataagtcaatccaaaca 43368619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 174
Target Start/End: Complemental strand, 12234922 - 12234810
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaat 161  Q
    |||||||||||||||||| |||||||||||||||| ||| ||||  ||||| |||||||| |||||||||| || | | || ||||||||| | | || |    
T  12234922 ggaaataagctgaaaacagcttatagacatgtcataagttgtttctataagctattccaagcagtctcacacgtgctaatgccagtagataagctcaact 12234823  T
Q  162 aagtcaatccaaa 174  Q
    |||||||||||||    
T  12234822 aagtcaatccaaa 12234810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 25670617 - 25670547
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaag 134  Q
    ||||||||||||||||| ||||  ||||||||| ||| ||||||||||||| |  ||||||||||||||||    
T  25670617 aaataagctgaaaacaatttattaacatgtcataagttgttttcataagttttctcaaacagtctcacaag 25670547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 34035956 - 34036068
Alignment:
Q  64 aaataagctgaaaacaacttatagaca-tgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaata 162  Q
    ||||||| ||||||||||||||  ||| |||||| |||  |||||||||||| ||||||  |||||||||| ||||  |||||||||||| | | |||||    
T  34035956 aaataagttgaaaacaacttatgaacaatgtcataagttattttcataagttcttccaagtagtctcacaa-tacatatgtcagtagataagctcaaata 34036054  T
Q  163 agtcaatccaaaca 176  Q
    ||||||| ||||||    
T  34036055 agtcaattcaaaca 34036068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 33894665 - 33894737
Alignment:
Q  63 gaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||||||||||||||||||||| ||||||||||  |  ||||||||||| | |  |||||||||||||||||    
T  33894665 gaaataagctgaaaacaacttatggacatgtcatatgctgttttcataagctctcacaaacagtctcacaagt 33894737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 4966193 - 4966267
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagta 136  Q
    |||||||| ||||||||||||||| ||||| |||| ||||||||  ||||| | | | |||||||||||||||||    
T  4966193 ggaaataaactgaaaacaacttatggacatatcataagtggtttctataagctctcctaaacagtctcacaagta 4966267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 33645994 - 33645920
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttat-tccaaacagtctcacaagt 135  Q
    |||||||| || ||||||||||||||||||||||| ||| |||| |||||| | | ||||| |||||||||||||    
T  33645994 ggaaataacctaaaaacaacttatagacatgtcataagttgtttccataagctctctccaaccagtctcacaagt 33645920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 46082075 - 46082123
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataag 112  Q
    |||||||||||||||||||||| | |||||||| ||| |||||||||||    
T  46082075 aaataagctgaaaacaacttatggtcatgtcataagttgttttcataag 46082123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 12242282 - 12242353
Alignment:
Q  63 gaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaag 134  Q
    ||||||||||||||||||||||||| ||| |||| ||  |||| |||||| | |  ||||||||||||||||    
T  12242282 gaaataagctgaaaacaacttataggcatatcataagccgtttgcataagctctctcaaacagtctcacaag 12242353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 48157153 - 48157082
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaa 133  Q
    |||||||||||||||||| ||||| |||||| ||| ||| ||||  ||||| | | ||||||||||||||||    
T  48157153 ggaaataagctgaaaacagcttatggacatggcataagttgtttctataagctctcccaaacagtctcacaa 48157082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 30751612 - 30751670
Alignment:
Q  118 ccaaacagtctcacaagtacaattgtcagtagatatgtttaaataagtcaatccaaaca 176  Q
    |||||||||| ||||||| |   |||||||||||| |||||||||||| ||||||||||    
T  30751612 ccaaacagtcgcacaagtgcttatgtcagtagataagtttaaataagttaatccaaaca 30751670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 95
Target Start/End: Complemental strand, 24363634 - 24363601
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtca 95  Q
    |||||||||||||||||||||||| |||||||||    
T  24363634 ggaaataagctgaaaacaacttatggacatgtca 24363601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 25797056 - 25797023
Alignment:
Q  63 gaaataagctgaaaacaacttatagacatgtcat 96  Q
    ||||||||||||||||||||| ||||||||||||    
T  25797056 gaaataagctgaaaacaacttgtagacatgtcat 25797023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 28521038 - 28520993
Alignment:
Q  69 agctgaaaacaacttatagacatgtcattagtggttttcataagtt 114  Q
    ||||||||||| |||||||||||||||| ||| |||| ||||||||    
T  28521038 agctgaaaacagcttatagacatgtcataagttgtttccataagtt 28520993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 34754843 - 34754770
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    |||||||||||||||||||||||||| | |||||| ||  |||||| |||| | |  |||||||||||| ||||    
T  34754843 ggaaataagctgaaaacaacttataggcttgtcataagatgttttcttaagctctctcaaacagtctcataagt 34754770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 10650 - 10575
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtac 137  Q
    |||||||||||||||||||||||| |||||||||||||| |||| |||||| | |  |||||||||||||||||||    
T  10650 ggaaataagctgaaaacaacttatggacatgtcattagttgtttacataagctttgtcaaacagtctcacaagtac 10575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 40158760 - 40158867
Alignment:
Q  67 taagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaataagtc 166  Q
    |||||||||||||||||||| ||||||||| ||  |||||||||||||   |||| ||||||||||||| |   |||||||||||||| | ||||||| |    
T  40158760 taagctgaaaacaacttataaacatgtcataagctgttttcataagttcccccaatcagtctcacaagttcttatgtcagtagatatgctcaaataagcc 40158859  T
Q  167 aatccaaa 174  Q
    ||||||||    
T  40158860 aatccaaa 40158867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 44606141 - 44606068
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtac 137  Q
    |||| ||||||||||||||||| |||||||||| ||| ||||||||||||| ||||||||||||  ||||||||    
T  44606141 aaatcagctgaaaacaacttatggacatgtcataagttgttttcataagttcttccaaacagtcgtacaagtac 44606068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 178
Target Start/End: Original strand, 787373 - 787485
Alignment:
Q  66 ataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaataagt 165  Q
    |||||||||||||| ||||| |||||||||| ||  ||||||||||||| |  |||||||| |||||||| |   || ||||||||||| |  |||||      
T  787373 ataagctgaaaacagcttatggacatgtcataagctgttttcataagttctcacaaacagtgtcacaagtgcttatgccagtagatatgctcgaataatc 787472  T
Q  166 caatccaaacaag 178  Q
    |||||||||||||    
T  787473 caatccaaacaag 787485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 5902576 - 5902509
Alignment:
Q  68 aagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||||||||||  ||||  ||||||||| ||  ||||||||||||| ||||||||||||||||||||    
T  5902576 aagctgaaaacagtttatgaacatgtcataagctgttttcataagttcttccaaacagtctcacaagt 5902509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 43065482 - 43065433
Alignment:
Q  63 gaaataagctgaaaacaacttatagacatgtcattagtggttttcataag 112  Q
    |||||||||||||||||| |||| |||||||||| ||| |||||||||||    
T  43065482 gaaataagctgaaaacaatttatggacatgtcataagttgttttcataag 43065433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 43456740 - 43456667
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||||||||||||||||  |||| |||||||||| ||| ||||||| ||| | || |||||||||| ||||||    
T  43456740 ggaaataagctgaaaacagtttatggacatgtcatgagttgttttcacaagctctttcaaacagtcttacaagt 43456667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 43199812 - 43199744
Alignment:
Q  67 taagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    |||||||||||||||||||| ||||||||  ||| || ||| ||| || | ||||||||||||||||||    
T  43199812 taagctgaaaacaacttataaacatgtcacaagttgtattcgtaacttctcccaaacagtctcacaagt 43199744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 22878147 - 22878249
Alignment:
Q  74 aaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaataagtcaatccaa 173  Q
    |||| ||||||||||  |||||| | | |||| |||||| | | |||||||||||||||||| |   ||||||| |||| | | ||||||||||||||||    
T  22878147 aaaaaaacttatagatgtgtcataatttgtttccataaggtctcccaaacagtctcacaagtgcttatgtcagtggataagctcaaataagtcaatccaa 22878246  T
Q  174 aca 176  Q
    |||    
T  22878247 aca 22878249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 28677692 - 28677626
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtct 128  Q
    |||||||||| |||||||||||||  | ||||||| ||  ||||||||||||| | |||||||||||    
T  28677692 ggaaataagccgaaaacaacttatgaaaatgtcataagctgttttcataagttctcccaaacagtct 28677626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 92
Target Start/End: Complemental strand, 41032988 - 41032958
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatg 92  Q
    |||||||||||||||||||||||||||||||    
T  41032988 ggaaataagctgaaaacaacttatagacatg 41032958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 7283037 - 7283106
Alignment:
Q  66 ataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||| |||||||||||||| ||||| |||| ||| |||| || ||| || |||||| ||||||||||||    
T  7283037 ataagatgaaaacaacttatggacatatcataagttgtttccaaaagctaatccaaatagtctcacaagt 7283106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 11063527 - 11063592
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctc 129  Q
    ||||||||| |||||||||||| |||||||||| |   |||| |||||| | ||||||||||||||    
T  11063527 aaataagctaaaaacaacttatggacatgtcataatatgtttccataagctcttccaaacagtctc 11063592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 95
Target Start/End: Complemental strand, 14300460 - 14300427
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtca 95  Q
    ||||||||||| ||||||||||||||||||||||    
T  14300460 ggaaataagctaaaaacaacttatagacatgtca 14300427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 30538204 - 30538163
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttt 105  Q
    |||||||||||||||||||||| |||||||||| ||| ||||    
T  30538204 aaataagctgaaaacaacttatggacatgtcataagttgttt 30538163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 41809278 - 41809205
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||||||||| ||||||||||||  ||||||||| ||| |||| || ||| | || ||| |||||||||||||    
T  41809278 ggaaataagctaaaaacaacttatgaacatgtcataagttgtttccacaagctcttacaatcagtctcacaagt 41809205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 94
Target Start/End: Complemental strand, 1160773 - 1160741
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtc 94  Q
    |||||||| ||||||||||||||||||||||||    
T  1160773 ggaaataaactgaaaacaacttatagacatgtc 1160741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 9556278 - 9556326
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataag 112  Q
    ||||||| ||||| | |||||| |||||||||||||| |||||||||||    
T  9556278 aaataagttgaaatctacttatggacatgtcattagttgttttcataag 9556326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 9878714 - 9878642
Alignment:
Q  63 gaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||||||  ||||||||||||| |||||||||| ||| |||| |||||| | ||||  ||||||||| ||||    
T  9878714 gaaataagtcgaaaacaacttatggacatgtcataagttgtttccataagctcttccctacagtctcagaagt 9878642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 135
Target Start/End: Original strand, 41170688 - 41170720
Alignment:
Q  103 ttttcataagttattccaaacagtctcacaagt 135  Q
    |||||||||||||||||||| ||||||||||||    
T  41170688 ttttcataagttattccaaatagtctcacaagt 41170720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 281881 - 281806
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtac 137  Q
    ||||||||||||||||||||||||||||||||||| ||| | || ||| || | | ||||||||||||||||||||    
T  281881 ggaaataagctgaaaacaacttatagacatgtcataagttgcttccattagctctcccaaacagtctcacaagtac 281806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 2460184 - 2460109
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtac 137  Q
    ||||||||| ||||||||||||| ||||||||||| ||| |||| |||||| | |  |||||||||||||||||||    
T  2460184 ggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtac 2460109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 20377953 - 20377903
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataag 112  Q
    |||||||||| |||||||||||||||||||||||| ||| |||||||||||    
T  20377953 ggaaataagccgaaaacaacttatagacatgtcataagttgttttcataag 20377903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 33498656 - 33498729
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    |||||||||||||||| ||| |||||||||||||| ||| ||||||||||| | | ||||| ||||||| ||||    
T  33498656 ggaaataagctgaaaataacctatagacatgtcataagttgttttcataagctctaccaaaaagtctcagaagt 33498729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 33089545 - 33089657
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaataa 163  Q
    ||||||||  ||||||||||||| ||||||| | ||  ||||||||||||| |   ||| |||||||||| ||||  |||||||||||| | | ||||||    
T  33089545 aaataagcgtaaaacaacttataaacatgtcctaagctgttttcataagttctctgaaatagtctcacaaatacatatgtcagtagataagctcaaataa 33089644  T
Q  164 gtcaatccaaaca 176  Q
    ||||| |||||||    
T  33089645 gtcaacccaaaca 33089657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 135
Target Start/End: Complemental strand, 7931761 - 7931686
Alignment:
Q  60 acggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    |||||||||||||||||||||||||   ||||||||| ||| ||||||||||| | ||| |||  |||||||||||    
T  7931761 acggaaataagctgaaaacaacttaagaacatgtcataagttgttttcataagctcttctaaatggtctcacaagt 7931686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 3217223 - 3217173
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataag 112  Q
    |||||||||||||||||||||||| ||| |||||| ||| |||||||||||    
T  3217223 ggaaataagctgaaaacaacttatcgacgtgtcatcagttgttttcataag 3217173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 7785777 - 7785743
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcat 96  Q
    |||||||||||||||||||||||||||||||||||    
T  7785777 ggaaataagctgaaaacaacttatagacatgtcat 7785743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 114
Target Start/End: Complemental strand, 33832304 - 33832254
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagtt 114  Q
    ||||||||| ||||||||||||| ||||||||| ||| |||||||||||||    
T  33832304 aaataagctaaaaacaacttataaacatgtcataagttgttttcataagtt 33832254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 1669830 - 1669781
Alignment:
Q  63 gaaataagctgaaaacaacttatagacatgtcattagtggttttcataag 112  Q
    ||||| ||||||||||| |||||||||||||||| ||| |||||||||||    
T  1669830 gaaatgagctgaaaacagcttatagacatgtcataagttgttttcataag 1669781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 8365007 - 8364938
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaa 133  Q
    |||||||||||||||| ||| || ||||||||| |||  ||| |||||||| ||||| ||||||||||||    
T  8365007 aaataagctgaaaacagcttgtaaacatgtcatcagttatttccataagttcttccatacagtctcacaa 8364938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 769180 - 769248
Alignment:
Q  67 taagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    |||| |||||||| |||||  ||||||||| ||  |||||||||||||  |||||||||||||||||||    
T  769180 taagttgaaaacagcttatgaacatgtcataagatgttttcataagttcatccaaacagtctcacaagt 769248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 2732275 - 2732207
Alignment:
Q  67 taagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    |||||||||||||| |||| ||||  |||||||  |||| |||||| | ||||||||||||||||||||    
T  2732275 taagctgaaaacaatttatggacagatcattagctgtttccataagcttttccaaacagtctcacaagt 2732207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 28660784 - 28660720
Alignment:
Q  71 ctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    |||||||||| ||||| ||||||||| ||||  || ||||||||||| |||||| ||||||||||    
T  28660784 ctgaaaacaatttataaacatgtcataagtgtgttccataagttatttcaaacactctcacaagt 28660720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 30863288 - 30863356
Alignment:
Q  67 taagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||||| | | ||||| ||||| ||||||    
T  30863288 taagctgaaaacaacttatgtacatgtcataagttgttttcataagctctaccaaagagtctaacaagt 30863356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 31583716 - 31583784
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctca 130  Q
    ||||||||| |||||||||||||| ||||||||||||| |||||  ||||| | | | |||||||||||    
T  31583716 ggaaataagttgaaaacaacttatggacatgtcattagcggtttaaataagctctccaaaacagtctca 31583784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Original strand, 3155212 - 3155246
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcat 96  Q
    |||||||||||||||||| ||||||||||||||||    
T  3155212 ggaaataagctgaaaacagcttatagacatgtcat 3155246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 152
Target Start/End: Original strand, 10031769 - 10031859
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagata 152  Q
    ||||||||| |||||||||||||| || ||||| | ||| | ||||||| | | || ||||||||||||||||| |   ||||||||||||    
T  10031769 ggaaataagatgaaaacaacttatggatatgtcgtaagttggtttcataggctctttcaaacagtctcacaagtgcttatgtcagtagata 10031859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 27909671 - 27909637
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcat 96  Q
    |||||||||||||||||||||||| ||||||||||    
T  27909671 ggaaataagctgaaaacaacttatggacatgtcat 27909637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 31958616 - 31958546
Alignment:
Q  63 gaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaa 133  Q
    |||||||||| ||||||  |||  |||||||||||| ||||||||||||| | | |||| |||||||||||    
T  31958616 gaaataagctaaaaacagattaaggacatgtcattaatggttttcataagctctcccaatcagtctcacaa 31958546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 176
Target Start/End: Original strand, 33788002 - 33788115
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaat 161  Q
    |||||||||||||||| ||||||| ||| |||| |  |  |||| |||||| | |  |||| ||||| |||| |||  |||||||||| || ||||||||    
T  33788002 ggaaataagctgaaaa-aacttatggacttgtcttacgcagtttccataagctttcacaaatagtctaacaaatacttttgtcagtaggtaagtttaaat 33788100  T
Q  162 aagtcaatccaaaca 176  Q
    |||||||||||||||    
T  33788101 aagtcaatccaaaca 33788115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 9027617 - 9027678
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacag 125  Q
    |||||||||||||||||||||| |||||||||| |||  ||| |||||| | || |||||||    
T  9027617 aaataagctgaaaacaacttatggacatgtcataagttatttccataagctctttcaaacag 9027678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 26559246 - 26559201
Alignment:
Q  88 acatgtcattagtggttttcataagttattccaaacagtctcacaa 133  Q
    |||| |||| ||| ||||||||||||| ||||||||||||||||||    
T  26559246 acatatcataagttgttttcataagttcttccaaacagtctcacaa 26559201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 28088255 - 28088183
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||||||||| |||||||| ||||||||||| || ||| |||| ||||||  ||||||||| |||||| ||||    
T  28088255 ggaaataagctcaaaacaacctatagacatgt-ataagttgtttccataagccattccaaactgtctcaaaagt 28088183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 31564728 - 31564653
Alignment:
Q  62 ggaaataagctgaaaacaac--ttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||||||||||||||||||  || | |||||||||||||| |||| ||| |  | ||| ||||||||||||||||    
T  31564728 ggaaataagctgaaaacaacttttgtggacatgtcattagttgtttccattaactcttcgaaacagtctcacaagt 31564653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 64 - 163
Target Start/End: Original strand, 41724251 - 41724350
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaataa 163  Q
    |||||||||||||||||||||| |||||||||| ||| |||| |||||||| |  ||||| |||| ||||||||   |||||||||||| ||| ||||||    
T  41724251 aaataagctgaaaacaacttatggacatgtcataagttgtttccataagttttcacaaactgtctgacaagtacttatgtcagtagataagttcaaataa 41724350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 172
Target Start/End: Original strand, 24624250 - 24624357
Alignment:
Q  65 aataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaataag 164  Q
    |||||||||||||||  |||| |||||||||| ||  ||||||||||| | ||||||||||||| |||||| | | ||| |||||||| ||| || ||||    
T  24624250 aataagctgaaaacagtttatggacatgtcataagctgttttcataagctcttccaaacagtcttacaagtgctaatgtgagtagataagttcaactaag 24624349  T
Q  165 tcaatcca 172  Q
     |||||||    
T  24624350 ccaatcca 24624357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 178
Target Start/End: Complemental strand, 36646414 - 36646299
Alignment:
Q  63 gaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaata 162  Q
    |||||||| |||||||| ||||| |||||| ||| |||||||| |||||| | | ||||| ||||| |||||| |   || || |||||||| |||||||    
T  36646414 gaaataagatgaaaacagcttatggacatgccataagtggtttccataagctctcccaaatagtcttacaagtgcctatgccaatagatatgcttaaata 36646315  T
Q  163 agtcaatccaaacaag 178  Q
    |||| |||||||||||    
T  36646314 agtcgatccaaacaag 36646299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 37273171 - 37273240
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcac 131  Q
    ||||||||| |||||||||||||| |||||||||| ||| |||| |||||| | | ||||||||||||||    
T  37273171 ggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcac 37273240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 43115093 - 43115166
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||||||||||||||||| |||| |||||||||| ||| |||| |||||  | ||||||||| ||||||||||    
T  43115093 ggaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactcttccaaacaatctcacaagt 43115166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 40122793 - 40122715
Alignment:
Q  55 agttaacggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaa 133  Q
    |||||| ||||||||||| ||||||||||||||| ||||||| |    |||||||||| ||||||||| |||| |||||    
T  40122793 agttaatggaaataagctaaaaacaacttatagagatgtcataaactattttcataagctattccaaatagtcgcacaa 40122715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 34707525 - 34707457
Alignment:
Q  66 ataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaag 134  Q
    ||||| |||||||||||||| |||||||||  ||| ||||||| ||||| |  ||||||||||||||||    
T  34707525 ataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 34707457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 47249517 - 47249457
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaaca 124  Q
    ||||||||  ||||||||||||  ||||||||| ||||||||||||||||| || ||||||    
T  47249517 aaataagccaaaaacaacttatgaacatgtcataagtggttttcataagttctttcaaaca 47249457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 50600209 - 50600145
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtct 128  Q
    |||||||||||||||| ||  | |||||||||| ||| ||||| ||||||| |||||||||||||    
T  50600209 aaataagctgaaaacagctcgtggacatgtcatgagttgtttttataagttcttccaaacagtct 50600145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 11039368 - 11039301
Alignment:
Q  66 ataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaa 133  Q
    |||||||||||||||||||| |||||||||| |   |||| |||||| | || |||||||||||||||    
T  11039368 ataagctgaaaacaacttatggacatgtcataatatgtttccataagctctttcaaacagtctcacaa 11039301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 95
Target Start/End: Complemental strand, 16990192 - 16990161
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtca 95  Q
    ||||||||||||||||||||||||||||||||    
T  16990192 aaataagctgaaaacaacttatagacatgtca 16990161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 137
Target Start/End: Original strand, 26542574 - 26542649
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtac 137  Q
    ||||||||| ||||||||| |||||||||| |||| ||| ||||   |||| | ||||||||||||| ||||||||    
T  26542574 ggaaataagttgaaaacaagttatagacatatcataagttgtttcagtaagctcttccaaacagtcttacaagtac 26542649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 27290934 - 27290863
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaa 133  Q
    |||||||||||||||||| ||||| | |||||||| ||  ||||||||||| | ||| |||||| |||||||    
T  27290934 ggaaataagctgaaaacagcttatgggcatgtcataagctgttttcataagctcttcgaaacagcctcacaa 27290863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 36200133 - 36200176
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttt 105  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||    
T  36200133 ggaaataagctgaaaacaacttatggacatgtcataagttgttt 36200176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 41671349 - 41671384
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattag 99  Q
    ||||||| ||||||||||||||||||||||||||||    
T  41671349 aaataagttgaaaacaacttatagacatgtcattag 41671384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 21872308 - 21872214
Alignment:
Q  82 ttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaataagtcaatccaaaca 176  Q
    |||| |||||||||| ||   |||||| ||| | |||||||||||||||||||| |   |||||||||||| | | |||||||| ||||||||||    
T  21872308 ttatggacatgtcataagctattttcaaaagcttttccaaacagtctcacaagtgcttatgtcagtagataagatcaaataagttaatccaaaca 21872214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 45541611 - 45541681
Alignment:
Q  65 aataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||| ||||||||| |||||  ||||||||| ||  ||||||||||||| ||| ||||||||| ||||||    
T  45541611 aataacctgaaaacagcttatgaacatgtcataagctgttttcataagttcttctaaacagtcttacaagt 45541681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 48049015 - 48048965
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataag 112  Q
    |||||||||||||||||| ||||| |||||||||| ||| | |||||||||    
T  48049015 ggaaataagctgaaaacagcttatggacatgtcatgagttggtttcataag 48048965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 11253538 - 11253611
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||||| ||||||||||  ||||||| ||||||| ||| ||||| |||| || | |||||||||||| |||||    
T  11253538 ggaaataggctgaaaacagtttatagatatgtcataagttgtttttataaattctgccaaacagtctctcaagt 11253611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 176
Target Start/End: Complemental strand, 20210960 - 20210847
Alignment:
Q  63 gaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaata 162  Q
    |||||||||||||||||||| |||||||| |||| |   |||| |||||| | |  |||||||||||||||||     ||||||||||||   | |||||    
T  20210960 gaaataagctgaaaacaactcatagacatatcataatccgtttgcataagatctctcaaacagtctcacaagtggttatgtcagtagataacctcaaata 20210861  T
Q  163 agtcaatccaaaca 176  Q
    | ||||||||||||    
T  20210860 aatcaatccaaaca 20210847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 176
Target Start/End: Original strand, 21574527 - 21574643
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctc--acaagtacaattgtcagtagatatgtttaa 159  Q
    ||||||||||| ||| || |||||  ||||||||| ||| ||||||||||| | | ||||||||||||  |||| |    ||| ||||||||| ||| ||    
T  21574527 ggaaataagctaaaagcagcttatgaacatgtcataagttgttttcataagctctcccaaacagtctcaaacaattgattttgccagtagataagttcaa 21574626  T
Q  160 ataagtcaatccaaaca 176  Q
    |||||||| ||||||||    
T  21574627 ataagtcattccaaaca 21574643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 177
Target Start/End: Original strand, 25129960 - 25130034
Alignment:
Q  107 cataagttattccaaacagtctcacaagtacaattgtcagtagatatgtt----taaataagtcaatccaaacaa 177  Q
    |||||| | ||| |||||||||||||||||||  |||||||||||| |||    ||||||| |||||||||||||    
T  25129960 cataagctcttctaaacagtctcacaagtacatatgtcagtagataagttcgaataaataaatcaatccaaacaa 25130034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 30923930 - 30923897
Alignment:
Q  63 gaaataagctgaaaacaacttatagacatgtcat 96  Q
    ||||||||||||||||| ||||||||||||||||    
T  30923930 gaaataagctgaaaacagcttatagacatgtcat 30923897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 51278211 - 51278174
Alignment:
Q  59 aacggaaataagctgaaaacaacttatagacatgtcat 96  Q
    |||||||||||||||||||||| | |||||||||||||    
T  51278211 aacggaaataagctgaaaacaattgatagacatgtcat 51278174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 54837065 - 54837000
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctc 129  Q
    |||||||| |||||||| ||||  ||||||||| ||  |||||||||| || ||||||||||||||    
T  54837065 aaataagcggaaaacaagttatgaacatgtcataagctgttttcataaattcttccaaacagtctc 54837000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 2923517 - 2923629
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaataa 163  Q
    ||||||||| |||| ||||||| |||||||  | ||| ||||  ||||||| |||||||||||||  |||||||   ||||| |||||| | |  |||||    
T  2923517 aaataagctaaaaataacttatggacatgtagtaagttgtttctataagttcttccaaacagtctttcaagtacttatgtcaatagataagctcgaataa 2923616  T
Q  164 gtcaatccaaaca 176  Q
    |||||||| ||||    
T  2923617 gtcaatccgaaca 2923629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 3015874 - 3015826
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataag 112  Q
    ||||||| |||||||| ||||| |||||||||| ||| |||||||||||    
T  3015874 aaataagatgaaaacatcttatggacatgtcataagttgttttcataag 3015826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 96
Target Start/End: Complemental strand, 12923356 - 12923324
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcat 96  Q
    |||||||||||||||||||||| ||||||||||    
T  12923356 aaataagctgaaaacaacttatggacatgtcat 12923324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 29427680 - 29427616
Alignment:
Q  60 acggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaaca 124  Q
    ||||||||||| |||||| | |||||  ||||||||||||  ||||||||||||| | |||||||    
T  29427680 acggaaataagttgaaaatagcttatgaacatgtcattaggtgttttcataagttctcccaaaca 29427616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 41633399 - 41633431
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcat 96  Q
    ||||||||||||||||| |||||||||||||||    
T  41633399 aaataagctgaaaacaatttatagacatgtcat 41633431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 42039197 - 42039233
Alignment:
Q  60 acggaaataagctgaaaacaacttatagacatgtcat 96  Q
    ||||||||||||||||||||||||| || ||||||||    
T  42039197 acggaaataagctgaaaacaacttacagccatgtcat 42039233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 51130789 - 51130837
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataag 112  Q
    ||||||||||||| |||||||| ||||||||||   |||||||||||||    
T  51130789 aaataagctgaaagcaacttatggacatgtcatacatggttttcataag 51130837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 178
Target Start/End: Complemental strand, 39178297 - 39178183
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaataa 163  Q
    ||||||| |||||||| |||||  || |||||| || |||||||||||||| | ||||||||| ||| ||||     |||||||||||||| |||||||     
T  39178297 aaataagttgaaaacatcttattaacgtgtcataagcggttttcataagttctcccaaacagtgtcaaaagtgtttatgtcagtagatatgcttaaatac 39178198  T
Q  164 gtcaatccaaacaag 178  Q
    |||||||||||||||    
T  39178197 gtcaatccaaacaag 39178183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 50800063 - 50799990
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    |||||||||||||||||| |||||||||||||||| ||| |||| ||| |||| | ||||||| ||||||||||    
T  50800063 ggaaataagctgaaaacagcttatagacatgtcataagttgtttacattagttctcccaaacaatctcacaagt 50799990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 27123385 - 27123310
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtac 137  Q
    ||||||||| ||||||||||||| ||||||||||| ||| |||| |||||| | |  |||||||||||||||||||    
T  27123385 ggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtac 27123310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 3176137 - 3176064
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||||||||||||||||||||||||||||| ||| ||  ||||||||||| | | | ||||||| ||||||||    
T  3176137 ggaaataagctgaaaacaacttatagacatgacataagatgttttcataagctctcctaaacagtttcacaagt 3176064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 23819127 - 23819197
Alignment:
Q  63 gaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaa 133  Q
    |||||||| |||||||||||||| |||||||||| ||  |||||| |||  | ||||||||||||||||||    
T  23819127 gaaataagatgaaaacaacttatggacatgtcataagctgttttcttaaactcttccaaacagtctcacaa 23819197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 1137749 - 1137822
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    |||||||| |||||||||||||||  ||||||||| ||  ||||||||||||| | | ||||||| ||||||||    
T  1137749 ggaaataaactgaaaacaacttatgaacatgtcataagatgttttcataagttctcctaaacagtgtcacaagt 1137822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 9843285 - 9843213
Alignment:
Q  63 gaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||||||||||||||||||||| || |||| |||||| |||||| |||  | ||  ||||||||||||||||    
T  9843285 gaaataagctgaaaacaacttatggatatgtgattagttgttttcttaatctctttgaaacagtctcacaagt 9843213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 4691887 - 4691958
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    |||||||||||||||||| ||| | |||||||| ||| |||| |||||||| |  |||| ||||||||||||    
T  4691887 aaataagctgaaaacaacatatgggcatgtcataagttgtttccataagttttctcaaatagtctcacaagt 4691958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 6978993 - 6978931
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagt 126  Q
    |||||||||||||||| |||||||||||||||| |||  |||  ||||||| | |||||||||    
T  6978993 aaataagctgaaaacagcttatagacatgtcataagttatttcaataagttctgccaaacagt 6978931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 176
Target Start/End: Complemental strand, 41603166 - 41603132
Alignment:
Q  142 gtcagtagatatgtttaaataagtcaatccaaaca 176  Q
    ||||||||||| |||||||||||||||||||||||    
T  41603166 gtcagtagataagtttaaataagtcaatccaaaca 41603132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 47118994 - 47118928
Alignment:
Q  66 ataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcaca 132  Q
    ||||||||||||||||  |||   ||||||| ||| ||||||||||||| |||||| ||||||||||    
T  47118994 ataagctgaaaacaaccaataacaatgtcatgagttgttttcataagttcttccaagcagtctcaca 47118928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 55547077 - 55547043
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcat 96  Q
    ||||||||||| |||||||||||||||||||||||    
T  55547077 ggaaataagctaaaaacaacttatagacatgtcat 55547043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 2841667 - 2841712
Alignment:
Q  66 ataagctgaaaacaacttatagacatgtcattagtggttttcataa 111  Q
    |||||||||||||||||||| |||||||||| ||| | ||||||||    
T  2841667 ataagctgaaaacaacttattgacatgtcataagttgctttcataa 2841712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 19304956 - 19304997
Alignment:
Q  55 agttaacggaaataagctgaaaacaacttatagacatgtcat 96  Q
    |||||| ||||| |||||||||||||||||| ||||||||||    
T  19304956 agttaatggaaacaagctgaaaacaacttatggacatgtcat 19304997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 20936262 - 20936189
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||||||| |||||||| |||||  |||| |||| ||| ||||||||||||| | | ||||||| ||||||||    
T  20936262 ggaaataaggtgaaaacagcttatgaacatatcataagttgttttcataagttttacgaaacagtgtcacaagt 20936189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 28232582 - 28232655
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||||||| ||||||||||||||| | | ||||| ||| |||| || ||| | |||||||||||||| |||||    
T  28232582 ggaaataagatgaaaacaacttataaataagtcataagttgtttccacaagctcttccaaacagtctcgcaagt 28232655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 7694043 - 7694007
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcatta 98  Q
    ||||||||||||||||||||||||  |||||||||||    
T  7694043 ggaaataagctgaaaacaacttatgaacatgtcatta 7694007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 8328127 - 8328079
Alignment:
Q  87 gacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    |||||||||| | | ||||||||||| ||||||||||||||||| ||||    
T  8328127 gacatgtcataaattgttttcataagctattccaaacagtctcataagt 8328079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 25583635 - 25583699
Alignment:
Q  68 aagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcaca 132  Q
    |||||||||||||||| | |||||||||| ||| |||| ||||||   | |||||||||||||||    
T  25583635 aagctgaaaacaacttttggacatgtcataagttgtttgcataagcgctcccaaacagtctcaca 25583699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 27970104 - 27970144
Alignment:
Q  71 ctgaaaacaacttatagacatgtcattagtggttttcataa 111  Q
    ||||||||| |||||||||||||||| ||| ||||||||||    
T  27970104 ctgaaaacagcttatagacatgtcataagttgttttcataa 27970144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 168
Target Start/End: Complemental strand, 33534200 - 33534096
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaataa 163  Q
    |||||||||||||||||||||| || ||||||  | | ||||||||||| | |  |||| | ||||||||||||   ||||| |||||| | | ||||||    
T  33534200 aaataagctgaaaacaacttatggatatgtcacaatttgttttcataagctctctcaaatactctcacaagtacttatgtcactagataagctcaaataa 33534101  T
Q  164 gtcaa 168  Q
    |||||    
T  33534100 gtcaa 33534096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 53155299 - 53155347
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataag 112  Q
    ||||||||||||| ||| ||||||||||||||| ||| |||| ||||||    
T  53155299 aaataagctgaaagcaatttatagacatgtcataagttgtttgcataag 53155347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 38578567 - 38578641
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtaca 138  Q
    ||||||||| ||||||||||||  | |||| || ||| |||||||||||||| ||||||||||||||||||||||    
T  38578567 aaataagctcaaaacaacttatgaatatgttataagttgttttcataagttagtccaaacagtctcacaagtaca 38578641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 31517771 - 31517700
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    |||||||||||||||| |||||  ||||||||| ||| ||||| ||||||| | ||||||||||||||||||    
T  31517771 aaataagctgaaaacagcttatgaacatgtcatgagttgttttgataagttctcccaaacagtctcacaagt 31517700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 15581292 - 15581381
Alignment:
Q  63 gaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagata 152  Q
    |||||| |||||||||| |||||||||||||||| ||| |||| ||| || | ||||||||| |||||||||| |   ||||||||||||    
T  15581292 gaaataggctgaaaacagcttatagacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgcttatgtcagtagata 15581381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 96
Target Start/End: Original strand, 4549267 - 4549301
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcat 96  Q
    |||||||||||||||||||||||||||||||||||    
T  4549267 ggaaataagctgaaaacaacttatagacatgtcat 4549301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 178
Target Start/End: Original strand, 4868439 - 4868552
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaataa 163  Q
    ||||||| |||||||||||||| |||||||||| ||| | ||||||||  | |  ||||||||||||||||| |   ||||| ||||||  || ||||||    
T  4868439 aaataagttgaaaacaacttattgacatgtcataagttg-tttcataaactctctcaaacagtctcacaagtgcctatgtcaatagataaattcaaataa 4868537  T
Q  164 gtcaatccaaacaag 178  Q
     ||||||||||||||    
T  4868538 atcaatccaaacaag 4868552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 30371186 - 30371228
Alignment:
Q  63 gaaataagctgaaaacaacttatagacatgtcattagtggttt 105  Q
    ||||||||||||||||||||||| |||||||||||||| ||||    
T  30371186 gaaataagctgaaaacaacttatggacatgtcattagttgttt 30371228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 176
Target Start/End: Complemental strand, 33723415 - 33723301
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaat 161  Q
    |||||||||||||||||| || ||  ||||||||| ||  |||| |||||||| | |||| |||||||||||||     ||  |||||||| ||| ||||    
T  33723415 ggaaataagctgaaaacatctcatgaacatgtcatgagctgtttccataagttttcccaagcagtctcacaagtgtttatggtagtagataagttcaaat 33723316  T
Q  162 aagtcaatccaaaca 176  Q
    |||||||||||||||    
T  33723315 aagtcaatccaaaca 33723301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 42336663 - 42336725
Alignment:
Q  73 gaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||||||||| | |||||||||| ||| |||||||||||||||  ||||||||| |||||||    
T  42336663 gaaaacaacttttggacatgtcataagttgttttcataagttatctcaaacagtcgcacaagt 42336725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 4768862 - 4768789
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||||||||||||||||| |||| |||||||| | ||  |||||| |||||| | |||||| |||||||||||    
T  4768862 ggaaataagctgaaaacaagttatggacatgtcgtaagctgttttcgtaagttttcccaaactgtctcacaagt 4768789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 173
Target Start/End: Complemental strand, 10199439 - 10199330
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaataa 163  Q
    ||||||||||||||||||||||  ||||||||| ||   ||||||| |||| | ||||| ||| |||||||| |   ||| |||||||| | | ||||||    
T  10199439 aaataagctgaaaacaacttatgaacatgtcataagctattttcatgagttctcccaaatagtgtcacaagtgcttatgttagtagataagctcaaataa 10199340  T
Q  164 gtcaatccaa 173  Q
    ||||||||||    
T  10199339 gtcaatccaa 10199330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 17420240 - 17420313
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||||||| ||||||||| |||| ||||||| || ||| ||||||||||| | ||| ||||||||| ||||||    
T  17420240 ggaaataagttgaaaacaatttatggacatgtaataagttgttttcataagctcttcaaaacagtctaacaagt 17420313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 24460377 - 24460320
Alignment:
Q  119 caaacagtctcacaagtacaattgtcagtagatatgtttaaataagtcaatccaaaca 176  Q
    ||||||||||||||||| |   |||||||||||| ||| |||||||||||||||||||    
T  24460377 caaacagtctcacaagtgctcatgtcagtagataagttcaaataagtcaatccaaaca 24460320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 29929653 - 29929580
Alignment:
Q  63 gaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagta 136  Q
    |||||| ||||||||||||||||  ||||||||| ||| ||||||||||| | | | ||||||| |||||||||    
T  29929653 gaaatatgctgaaaacaacttatgcacatgtcatgagttgttttcataagctctccaaaacagtatcacaagta 29929580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 38001639 - 38001704
Alignment:
Q  68 aagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaa 133  Q
    ||||||||||||||||||  ||| ||||| ||  ||||||||||||| | ||||||||||||||||    
T  38001639 aagctgaaaacaacttatgaacaggtcataagctgttttcataagttctcccaaacagtctcacaa 38001704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 175
Target Start/End: Original strand, 6659719 - 6659830
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaataa 163  Q
    |||| ||||||||||||||||| |||||| ||   || ||| ||||||| ||| ||||| |||||||||||| |   ||  |||||||| | | ||||||    
T  6659719 aaatgagctgaaaacaacttatggacatgccaaatgttgttatcataagctatcccaaatagtctcacaagtgcttatgctagtagataagctaaaataa 6659818  T
Q  164 gtcaatccaaac 175  Q
    ||||||||||||    
T  6659819 gtcaatccaaac 6659830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 111
Target Start/End: Original strand, 29635386 - 29635433
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataa 111  Q
    ||||||||||||||||||||||| ||||||||| | | ||||||||||    
T  29635386 aaataagctgaaaacaacttataaacatgtcataacttgttttcataa 29635433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 37593715 - 37593644
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    |||||||||||||||| |||||  ||||||||| ||| || ||||| |||| | ||||||||||| ||||||    
T  37593715 aaataagctgaaaacagcttatgaacatgtcataagttgtgttcattagttttcccaaacagtctaacaagt 37593644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 135
Target Start/End: Complemental strand, 38170717 - 38170650
Alignment:
Q  68 aagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||||||||||||||||  ||||||||| ||  ||||||||||| | | |||| |||||||||||||    
T  38170717 aagctgaaaacaacttatgaacatgtcataagctgttttcataagctctcccaagcagtctcacaagt 38170650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 43954074 - 43954004
Alignment:
Q  66 ataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtac 137  Q
    |||||||||||||||||||| ||||  |||| |||||||| |||||| |||  |||||||| ||||||||||    
T  43954074 ataagctgaaaacaacttat-gacaaatcataagtggtttccataagctatctcaaacagtttcacaagtac 43954004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 50644247 - 50644173
Alignment:
Q  102 gttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaataagtcaatccaaacaa 177  Q
    ||||||||||||| | ||||||||||||||||  |||  ||| |||||||| | | ||||||||||||||||||||    
T  50644247 gttttcataagttctcccaaacagtctcacaa-aacatatgttagtagataagctcaaataagtcaatccaaacaa 50644173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 3223705 - 3223747
Alignment:
Q  63 gaaataagctgaaaacaacttatagacatgtcattagtggttt 105  Q
    |||||||||||||||||||||||| ||||||||| ||| ||||    
T  3223705 gaaataagctgaaaacaacttataaacatgtcataagttgttt 3223747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 12477320 - 12477286
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcat 96  Q
    |||||||||||||||||||||||| ||||||||||    
T  12477320 ggaaataagctgaaaacaacttatggacatgtcat 12477286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 15579519 - 15579585
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtct 128  Q
    ||||||||||||| |||||||||| |||||||||| ||| |||| || ||| | | |||||||||||    
T  15579519 ggaaataagctgagaacaacttatggacatgtcataagttgtttccacaagctctcccaaacagtct 15579585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 174
Target Start/End: Complemental strand, 18327173 - 18327067
Alignment:
Q  68 aagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaataagtca 167  Q
    ||||||||||  |||||||  |||||||| ||| ||||||||||||| ||||||| ||| ||| |||| |   || ||||||||| | | ||||||| ||    
T  18327173 aagctgaaaattacttataaccatgtcataagttgttttcataagttcttccaaatagtgtcaaaagtgcttatgacagtagataagctcaaataagcca 18327074  T
Q  168 atccaaa 174  Q
    |||||||    
T  18327073 atccaaa 18327067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 33108655 - 33108581
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagta 136  Q
    ||||||||| |||||||||||||| | |||| ||| ||| ||||||||||||| ||| | || |||||| |||||    
T  33108655 ggaaataagttgaaaacaacttatggtcatggcatgagttgttttcataagttcttctatacggtctcataagta 33108581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 33722434 - 33722400
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcat 96  Q
    ||||||||||||||||||||||||||| |||||||    
T  33722434 ggaaataagctgaaaacaacttatagatatgtcat 33722400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 24502863 - 24502818
Alignment:
Q  60 acggaaataagctgaaaacaacttatagacatgtcattagtggttt 105  Q
    ||||||||||||||||||||| |||| |||||||||| ||| ||||    
T  24502863 acggaaataagctgaaaacaaattattgacatgtcataagttgttt 24502818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 32515470 - 32515401
Alignment:
Q  66 ataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||| |||||||||||||| ||||||||||  |  |||| |||||| | | ||||||||||||||||||    
T  32515470 ataagttgaaaacaacttattgacatgtcatacgctgtttccataagctctcccaaacagtctcacaagt 32515401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 3924661 - 3924713
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagtt 114  Q
    |||||||||| |||||||||||||| |||| |||| | | |||||||||||||    
T  3924661 ggaaataagccgaaaacaacttataaacatttcataaattgttttcataagtt 3924713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 4622132 - 4622244
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaataa 163  Q
    ||||||||| |||||| ||||| |||||||||| ||  |||  ||| || | ||||||||||||| |||||| |   ||||| ||| || | ||||||||    
T  4622132 aaataagctaaaaacagcttatggacatgtcataagatgttcccattagatcttccaaacagtctaacaagttcttatgtcattagttaagcttaaataa 4622231  T
Q  164 gtcaatccaaaca 176  Q
    |||||| ||||||    
T  4622232 gtcaattcaaaca 4622244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 27140517 - 27140549
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcat 96  Q
    |||||||||||||||||||||| ||||||||||    
T  27140517 aaataagctgaaaacaacttatggacatgtcat 27140549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 96
Target Start/End: Complemental strand, 28689483 - 28689451
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcat 96  Q
    |||||||||||||||||||||| ||||||||||    
T  28689483 aaataagctgaaaacaacttatggacatgtcat 28689451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 31118080 - 31118132
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagtt 114  Q
    ||||||||||||||||||||| ||  ||||||||| ||  |||||||||||||    
T  31118080 ggaaataagctgaaaacaactgatgaacatgtcataagatgttttcataagtt 31118132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 151
Target Start/End: Original strand, 27613 - 27702
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagat 151  Q
    |||||||||||||||||||||||||| |||||||| ||   ||| |||||| | | ||||||||||||| |||||||  |||||||||||    
T  27613 ggaaataagctgaaaacaacttatagccatgtcataagctatttccataagctctcccaaacagtctcagaagtacatatgtcagtagat 27702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 7674687 - 7674756
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaa 133  Q
    |||||||||||||||| |||||| ||||||||| ||| |||| |||||||| |||||| |||||||||||    
T  7674687 aaataagctgaaaacaccttataaacatgtcataagttgtttccataagttcttccaagcagtctcacaa 7674756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 10907415 - 10907488
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    |||||||||| ||||||| ||||| |||||| ||| ||| ||||||||||| | ||||||||||||||||||||    
T  10907415 ggaaataagccgaaaacagcttattgacatgacataagttgttttcataagctcttccaaacagtctcacaagt 10907488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 176
Target Start/End: Complemental strand, 499764 - 499650
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaat 161  Q
    |||||||||||||||||||||| |  ||||||||| ||  ||||||||||||| | |||||||| || ||| || |   ||||||||| || | | ||||    
T  499764 ggaaataagctgaaaacaacttgttaacatgtcataagctgttttcataagttctcccaaacagcctaacaggtgcttatgtcagtaggtaagctcaaat 499665  T
Q  162 aagtcaatccaaaca 176  Q
    |||||||||||||||    
T  499664 aagtcaatccaaaca 499650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 12460032 - 12459920
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaataa 163  Q
    ||||||||  |||||||| |||  ||||||||| ||| ||||||||| ||| | ||||||||||||||| || |   |||||| ||||| |   ||||||    
T  12460032 aaataagccaaaaacaacatatgaacatgtcataagttgttttcataggttctcccaaacagtctcacaggtgcttatgtcagcagataagccgaaataa 12459933  T
Q  164 gtcaatccaaaca 176  Q
    |||||||||||||    
T  12459932 gtcaatccaaaca 12459920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 16457645 - 16457573
Alignment:
Q  63 gaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    |||||||||||||||||||||||  ||||||||  | | |||| |||| | | ||||||||||||||||||||    
T  16457645 gaaataagctgaaaacaacttatgaacatgtcacaatttgtttccatatgctcttccaaacagtctcacaagt 16457573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 18700427 - 18700471
Alignment:
Q  68 aagctgaaaacaacttatagacatgtcattagtggttttcataag 112  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||    
T  18700427 aagctgaaaacaacttatagacatgtcataagttgtttccataag 18700471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 93
Target Start/End: Complemental strand, 18704069 - 18704038
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgt 93  Q
    ||||||||||||||||||||||||||||||||    
T  18704069 ggaaataagctgaaaacaacttatagacatgt 18704038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Original strand, 35963278 - 35963312
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcat 96  Q
    |||||||||||||||||||||||| ||||||||||    
T  35963278 ggaaataagctgaaaacaacttatggacatgtcat 35963312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 176
Target Start/End: Complemental strand, 3280688 - 3280655
Alignment:
Q  143 tcagtagatatgtttaaataagtcaatccaaaca 176  Q
    |||||||||| |||||||||||||||||||||||    
T  3280688 tcagtagataagtttaaataagtcaatccaaaca 3280655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 3619010 - 3618937
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||||||||  ||||| ||||||||| ||||| ||||| ||||||||||  | ||  ||||||||||||||||    
T  3619010 ggaaataagccaaaaactacttatagatatgtcgttagttgttttcataaacttttgtaaacagtctcacaagt 3618937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 7907923 - 7907992
Alignment:
Q  67 taagctgaaaacaacttatagacatgtcatta-gtggttttcataagttattccaaacagtctcacaagt 135  Q
    |||||||||||||||||||  | || ||| || || ||||||||||||| ||||||||||||||| ||||    
T  7907923 taagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacagtctcataagt 7907992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 169
Target Start/End: Complemental strand, 10125749 - 10125644
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaataa 163  Q
    |||||||||||||||| |||||  ||||||||| ||| |||| |||||||| |  || ||| | |||||||| |   |||||||||||| | ||||||||    
T  10125749 aaataagctgaaaacaccttatcaacatgtcataagttgtttacataagttctctcagacaatgtcacaagtgctcatgtcagtagataagcttaaataa 10125650  T
Q  164 gtcaat 169  Q
    | ||||    
T  10125649 gccaat 10125644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 10272462 - 10272421
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttt 105  Q
    ||||||||||||||||||||| ||||||||||| ||| ||||    
T  10272462 aaataagctgaaaacaacttacagacatgtcataagttgttt 10272421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 10391379 - 10391452
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||||||| ||||||||||| ||||||||||||| |   ||||| ||||  | ||||||||| ||||||||||    
T  10391379 ggaaataagttgaaaacaactaatagacatgtcataaagtgtttttataaactcttccaaacaatctcacaagt 10391452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 17369471 - 17369438
Alignment:
Q  63 gaaataagctgaaaacaacttatagacatgtcat 96  Q
    ||||||| ||||||||||||||||||||||||||    
T  17369471 gaaataatctgaaaacaacttatagacatgtcat 17369438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 37611248 - 37611147
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaat 161  Q
    |||||||| ||||||||| |||||  ||||||||  ||| ||||||||||| | |  |||||| ||||||||||||   || ||||||||| ||| ||||    
T  37611248 ggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagtacttgtgccagtagataagttcaaat 37611149  T
Q  162 aa 163  Q
    ||    
T  37611148 aa 37611147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 37787978 - 37787877
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaat 161  Q
    |||||||| ||||||||| |||||  ||||||||  ||| ||||||||||| | |  |||||| ||||||||||||   || ||||||||| ||| ||||    
T  37787978 ggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagtacttgtgccagtagataagttcaaat 37787879  T
Q  162 aa 163  Q
    ||    
T  37787878 aa 37787877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 4619744 - 4619808
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagt 126  Q
    ||||||||| ||||| || |||||  ||||||||||||| ||||||||||| | | |||||||||    
T  4619744 ggaaataaggtgaaaccagcttatgaacatgtcattagttgttttcataagctctcccaaacagt 4619808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 11457148 - 11457208
Alignment:
Q  75 aaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagt 135  Q
    ||||| ||||| |||||||||| ||| |||| |||||| | ||| ||||||||||||||||    
T  11457148 aaacagcttatggacatgtcataagttgtttccataagctcttcaaaacagtctcacaagt 11457208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 11707094 - 11707126
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcat 96  Q
    ||||||||||||||||||||||| |||||||||    
T  11707094 aaataagctgaaaacaacttataaacatgtcat 11707126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 12930606 - 12930642
Alignment:
Q  60 acggaaataagctgaaaacaacttatagacatgtcat 96  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  12930606 acggaaataagctaaaaacaacttctagacatgtcat 12930642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 176
Target Start/End: Original strand, 14331406 - 14331517
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaacagtctcacaagtacaattgtcagtagatatgtttaaataa 163  Q
    ||||||||||||| || ||||| |||||||||| ||  |||||  |||||| ||||||||| |||||  ||| |   || ||||||||| | | ||||||    
T  14331406 aaataagctgaaatcagcttatggacatgtcataagctgtttt-gtaagtttttccaaacaatctcaagagtgcttatgacagtagataagctcaaataa 14331504  T
Q  164 gtcaatccaaaca 176  Q
    |||||||||||||    
T  14331505 gtcaatccaaaca 14331517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 176
Target Start/End: Original strand, 17368791 - 17368823
Alignment:
Q  144 cagtagatatgtttaaataagtcaatccaaaca 176  Q
    ||||||||| |||||||||||||||||||||||    
T  17368791 cagtagataagtttaaataagtcaatccaaaca 17368823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 38766576 - 38766516
Alignment:
Q  64 aaataagctgaaaacaacttatagacatgtcattagtggttttcataagttattccaaaca 124  Q
    |||||||  ||||||||||||| ||| |||||| ||| |||| |||||||| |||||||||    
T  38766576 aaataagtcgaaaacaacttatggacgtgtcataagttgtttccataagttcttccaaaca 38766516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 6527 - 6493
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcat 96  Q
    |||||||| ||||||||||||||||||||||||||    
T  6527 ggaaataaactgaaaacaacttatagacatgtcat 6493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 13547 - 13513
Alignment:
Q  62 ggaaataagctgaaaacaacttatagacatgtcat 96  Q
    |||||||| ||||||||||||||||||||||||||    
T  13547 ggaaataaactgaaaacaacttatagacatgtcat 13513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 12732 - 12687
Alignment:
Q  67 taagctgaaaacaacttatagacatgtcattagtggttttcataag 112  Q
    ||||||||||||||||||| |||||||||| ||| |||| ||||||    
T  12732 taagctgaaaacaacttatggacatgtcataagttgtttccataag 12687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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