View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21379_high_2 (Length: 487)

Name: NF21379_high_2
Description: NF21379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21379_high_2
NF21379_high_2
[»] chr1 (3 HSPs)
chr1 (224-469)||(39111281-39111529)
chr1 (256-465)||(14116819-14117019)
chr1 (10-55)||(39111616-39111661)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 224 - 469
Target Start/End: Complemental strand, 39111529 - 39111281
Alignment:
Q  224 agactctaaactgtatcactcaagactctaaaaccaaactattccaagagttaactcacacacaatatgc-aaaagatattgtttaaacaaaaacttaag 322  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||     
T  39111529 agactctaaactgtatcactcaagactctaaaatcaaactattccaagagttaactcacacacaatatgcaaaaagatattgtttggacaaaaacttaaa 39111430  T
Q  323 tttcacatcaatcttgagtgtgaagtaaggataaaaaatt-ccaccattgttttaactagacatatccaagttggaccaagagctataatagatggtaca 421  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39111429 tttcacatcaatcttgagtgtgaagtaaggataaagaattcccaccattg-tttaactagacatatccaagttggaccaagagctataatagatggtaca 39111331  T
Q  422 tgtgtgtgagagctatt-agaccctgacctta-taaaccaccaccatcat 469  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||||||||    
T  39111330 tgtgtgtgagagctattaagaccctgaccttacaaaaccaccaccatcat 39111281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 256 - 465
Target Start/End: Original strand, 14116819 - 14117019
Alignment:
Q  256 accaaactattccaagagttaactcacacacaatatgcaaaagatattgtttaaacaaaaacttaagtttcacatcaatcttgagtgtgaagtaaggata 355  Q
    ||||||||||||||||||||||||  ||      ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  14116819 accaaactattccaagagttaacttgca------atgcaaaagatattgtttcgacaaaaacttaagtttcacatcaatcttgagtgtgaagtaaggata 14116912  T
Q  356 aaaaattccaccattgttttaactagacatatccaagttggaccaagagctataatagatggtacatgtgtgtgagagctattagaccctgaccttataa 455  Q
    |||| | ||| ||||||||| |||  |||||||||||||||||||| || |||||||||||||||| ||||| | ||||||||||| |||||||||| ||    
T  14116913 aaaattcccagcattgtttt-act--acatatccaagttggaccaaaagttataatagatggtacacgtgtgagggagctattagatcctgaccttacaa 14117009  T
Q  456 accaccacca 465  Q
    ||||||||||    
T  14117010 accaccacca 14117019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 39111661 - 39111616
Alignment:
Q  10 attattctaggtttttagtgaggcttagagtaagttatttatgagt 55  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  39111661 attattctaggtttttagtgaggcttagagtgagttatttatgagt 39111616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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