View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21379_low_1 (Length: 579)

Name: NF21379_low_1
Description: NF21379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21379_low_1
NF21379_low_1
[»] chr8 (2 HSPs)
chr8 (41-523)||(7605044-7605528)
chr8 (468-518)||(12883127-12883177)
[»] chr5 (7 HSPs)
chr5 (468-523)||(29429618-29429673)
chr5 (469-519)||(29429556-29429606)
chr5 (465-518)||(29855458-29855511)
chr5 (468-523)||(6818584-6818639)
chr5 (469-519)||(36187525-36187575)
chr5 (466-523)||(141317-141374)
chr5 (467-523)||(30784316-30784372)
[»] chr3 (8 HSPs)
chr3 (468-523)||(43271653-43271708)
chr3 (471-523)||(23071973-23072025)
chr3 (468-523)||(54362039-54362094)
chr3 (468-508)||(32737831-32737871)
chr3 (468-523)||(9762755-9762810)
chr3 (468-523)||(37311652-37311707)
chr3 (469-508)||(41666924-41666963)
chr3 (468-523)||(53683946-53684001)
[»] chr2 (4 HSPs)
chr2 (465-523)||(929031-929089)
chr2 (471-510)||(34806211-34806250)
chr2 (465-507)||(2788427-2788471)
chr2 (471-523)||(15215514-15215566)
[»] chr1 (6 HSPs)
chr1 (465-523)||(3150657-3150715)
chr1 (465-523)||(29867033-29867091)
chr1 (473-523)||(37316136-37316186)
chr1 (465-523)||(49044700-49044758)
chr1 (465-508)||(47206737-47206780)
chr1 (467-523)||(42728509-42728565)
[»] scaffold0121 (1 HSPs)
scaffold0121 (467-523)||(34012-34068)
[»] chr7 (6 HSPs)
chr7 (471-523)||(37708542-37708594)
chr7 (468-523)||(48723328-48723383)
chr7 (472-523)||(9658337-9658388)
chr7 (469-508)||(11698390-11698429)
chr7 (469-523)||(29724371-29724425)
chr7 (467-521)||(32854262-32854316)
[»] chr4 (9 HSPs)
chr4 (468-512)||(48809865-48809909)
chr4 (468-523)||(50685601-50685656)
chr4 (472-523)||(13529361-13529412)
chr4 (468-523)||(14112276-14112330)
chr4 (468-511)||(40227654-40227697)
chr4 (465-523)||(3527885-3527943)
chr4 (474-523)||(48546338-48546387)
chr4 (475-523)||(13902029-13902077)
chr4 (471-523)||(23241023-23241075)
[»] chr6 (1 HSPs)
chr6 (468-523)||(7509736-7509791)


Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-172; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 41 - 523
Target Start/End: Original strand, 7605044 - 7605528
Alignment:
Q  41 gagggaacaatacaaagtaagttaaaacaagtttataattctcgaccgaaattgatataatggttagaccttatgttccgttgatac-aattctttagct 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||  || ||| |||  ||||||||||||    
T  7605044 gagggaacaatacaaagtaagttaaaacaagtttataattctcgaccgaaattgatataatggttataactcatagtc-gtttatagtaattctttagct 7605142  T
Q  140 tgcatcaactatgagttaggattatcgcttgaaatttaagtaaatttcaatattttttagggaaagtaaatttcattgttaatcttaacgaatttggtgg 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  7605143 tgcatcaactatgagttaggattatcgcttgaaatttaagtaaatttcaatattttttagggaaagtaaatttcatttttaatctcaacgaatttggtgg 7605242  T
Q  240 ttctcggtgactttgcatcagttgtatcttccatcatatgaattctttatgataaagnnnnnnnnttatgattaacaacttgtattattattttgctttt 339  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  7605243 ttctcggtgactttgcataagttgtatattccatcatatgaattctttatgataaagaaaaaaaattatgattaacaacttgtattattattttgctttt 7605342  T
Q  340 aacaagcatgattatttnnnnnnnnnnnnnnnncagttttgataattaatattagaatatagtttctactactatataatacctgaaaag--taagtcta 437  Q
    |||||||||||| ||||                |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  ||||||||    
T  7605343 aacaagcatgatcatttaaaataaaataaaaaacagttttgataattaatattagaatatagtttctactactatataataactgaaaagtataagtcta 7605442  T
Q  438 tagtattttttagggaaatattaacttagacacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||||||||| ||||||| ||||| ||||    
T  7605443 tagtattttttagggaaatgttaacttagactcaaattaatgagtcaaaagtggaaatattttgttgaaataaatgcatttaaatt 7605528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 518
Target Start/End: Complemental strand, 12883177 - 12883127
Alignment:
Q  468 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacattt 518  Q
    ||||||||||||||| | ||||||||||| ||||||||||| ||| |||||    
T  12883177 cacaagttaatgagttataagtgaaaataatttgttgtaattaatgcattt 12883127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 468 - 523
Target Start/End: Original strand, 29429618 - 29429673
Alignment:
Q  468 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    |||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||    
T  29429618 cacaagttaaagagtcaaaagtggaaatattttgttgtaattaatacatttgaatt 29429673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 469 - 519
Target Start/End: Original strand, 29429556 - 29429606
Alignment:
Q  469 acaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttg 519  Q
    ||||||||| |||||||||||| ||||||||||||||||| ||||||||||    
T  29429556 acaagttaaagagtcaaaagtggaaatattttgttgtaattaatacatttg 29429606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 465 - 518
Target Start/End: Complemental strand, 29855511 - 29855458
Alignment:
Q  465 agacacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacattt 518  Q
    |||||||||| ||||||||||| || |||||||||||||||||| ||| |||||    
T  29855511 agacacaagtaaatgagtcaaatgtaaaaatattttgttgtaattaatgcattt 29855458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 523
Target Start/End: Original strand, 6818584 - 6818639
Alignment:
Q  468 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    ||||||||||||||| |||| |||||||| ||||||||||| |||  |||||||||    
T  6818584 cacaagttaatgagttaaaaatgaaaataatttgttgtaatcaatgtatttgaatt 6818639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 519
Target Start/End: Original strand, 36187525 - 36187575
Alignment:
Q  469 acaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttg 519  Q
    |||||||||||| | |||||| |||||||||||||||||| ||| ||||||    
T  36187525 acaagttaatgaattaaaagtaaaaatattttgttgtaattaatgcatttg 36187575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 523
Target Start/End: Original strand, 141317 - 141374
Alignment:
Q  466 gacacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    ||||||||||||||||  ||||||| |||||  |||||||||| ||| ||||||||||    
T  141317 gacacaagttaatgagctaaaagtggaaataaattgttgtaattaatgcatttgaatt 141374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 523
Target Start/End: Complemental strand, 30784372 - 30784316
Alignment:
Q  467 acacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    |||||||||| | ||| |||||| |||||||||||||||||| |||  |||||||||    
T  30784372 acacaagttattaagttaaaagtaaaaatattttgttgtaattaatgtatttgaatt 30784316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 523
Target Start/End: Original strand, 43271653 - 43271708
Alignment:
Q  468 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||||| ||||||||||    
T  43271653 cacaagttaatgaatcaaaagtggaaatattctgttgtaataaatgcatttgaatt 43271708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 471 - 523
Target Start/End: Complemental strand, 23072025 - 23071973
Alignment:
Q  471 aagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    ||||||||||| |||||||||||||||||| ||||||| ||| ||||||||||    
T  23072025 aagttaatgagccaaaagtgaaaatattttattgtaattaatgcatttgaatt 23071973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 523
Target Start/End: Original strand, 54362039 - 54362094
Alignment:
Q  468 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    ||||||||||||||||||||||  |||||||| |||||||| ||| ||||||||||    
T  54362039 cacaagttaatgagtcaaaagtagaaatatttggttgtaatcaatgcatttgaatt 54362094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 508
Target Start/End: Complemental strand, 32737871 - 32737831
Alignment:
Q  468 cacaagttaatgagtcaaaagtgaaaatattttgttgtaat 508  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  32737871 cacaagttaatgagtcaaaaatgaaaataatttgttgtaat 32737831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 523
Target Start/End: Complemental strand, 9762810 - 9762755
Alignment:
Q  468 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    ||||| ||||||||||||||||  ||||||||| ||||||| ||| ||||||||||    
T  9762810 cacaaattaatgagtcaaaagtagaaatattttattgtaattaatgcatttgaatt 9762755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 523
Target Start/End: Original strand, 37311652 - 37311707
Alignment:
Q  468 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    |||||||||||||| |||||||  ||||| ||||||||||| ||| ||||||||||    
T  37311652 cacaagttaatgagacaaaagtataaataatttgttgtaattaatgcatttgaatt 37311707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 508
Target Start/End: Original strand, 41666924 - 41666963
Alignment:
Q  469 acaagttaatgagtcaaaagtgaaaatattttgttgtaat 508  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  41666924 acaagttaatgagtcaaaagtaaaaatattttattgtaat 41666963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 523
Target Start/End: Original strand, 53683946 - 53684001
Alignment:
Q  468 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    |||||||||||||| |||||||||||||| |||||| |||| |||  |||||||||    
T  53683946 cacaagttaatgagccaaaagtgaaaataatttgttttaattaatgtatttgaatt 53684001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 465 - 523
Target Start/End: Original strand, 929031 - 929089
Alignment:
Q  465 agacacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    ||||||||||||| |||||||||||  ||||||||||||||||| ||| ||||||||||    
T  929031 agacacaagttaaagagtcaaaagtagaaatattttgttgtaatcaatgcatttgaatt 929089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 510
Target Start/End: Original strand, 34806211 - 34806250
Alignment:
Q  471 aagttaatgagtcaaaagtgaaaatattttgttgtaataa 510  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  34806211 aagttaatgagtcaaaaatgaaaatattttattgtaataa 34806250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 507
Target Start/End: Original strand, 2788427 - 2788471
Alignment:
Q  465 agacacaagttaatg--agtcaaaagtgaaaatattttgttgtaa 507  Q
    |||||||||||||||  ||||||||||||||||||||| ||||||    
T  2788427 agacacaagttaatgtgagtcaaaagtgaaaatattttattgtaa 2788471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 523
Target Start/End: Original strand, 15215514 - 15215566
Alignment:
Q  471 aagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    |||||||||||||||||||  |||||| |||||| ||| ||| ||||||||||    
T  15215514 aagttaatgagtcaaaagtagaaatatattgttgaaattaatgcatttgaatt 15215566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 465 - 523
Target Start/End: Original strand, 3150657 - 3150715
Alignment:
Q  465 agacacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    |||||||||||||  ||||||||||| ||||| ||||||||||| ||||||||||||||    
T  3150657 agacacaagttaacaagtcaaaagtggaaataatttgttgtaattaatacatttgaatt 3150715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 465 - 523
Target Start/End: Complemental strand, 29867091 - 29867033
Alignment:
Q  465 agacacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    ||||| ||||||| || ||||||||  ||||||||||||||||||||||||||||||||    
T  29867091 agacataagttaacgaatcaaaagtagaaatattttgttgtaataaatacatttgaatt 29867033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 473 - 523
Target Start/End: Original strand, 37316136 - 37316186
Alignment:
Q  473 gttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    |||||||||||||||||||||||| ||||||||||| |||| |||||||||    
T  37316136 gttaatgagtcaaaagtgaaaataatttgttgtaattaatatatttgaatt 37316186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 523
Target Start/End: Original strand, 49044700 - 49044758
Alignment:
Q  465 agacacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    ||||| |||||||||||||||||||  ||||||||| ||||||| ||| ||||||||||    
T  49044700 agacataagttaatgagtcaaaagtagaaatattttattgtaattaatgcatttgaatt 49044758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 508
Target Start/End: Original strand, 47206737 - 47206780
Alignment:
Q  465 agacacaagttaatgagtcaaaagtgaaaatattttgttgtaat 508  Q
    ||||||||||||||||||||||| | |||||| |||||||||||    
T  47206737 agacacaagttaatgagtcaaaaataaaaatactttgttgtaat 47206780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 523
Target Start/End: Complemental strand, 42728565 - 42728509
Alignment:
Q  467 acacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    |||||| |||||||||||||| |||||||||||| ||| | | ||| ||||||||||    
T  42728565 acacaaattaatgagtcaaaaatgaaaatattttattgaatttaatgcatttgaatt 42728509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 467 - 523
Target Start/End: Original strand, 34012 - 34068
Alignment:
Q  467 acacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    ||||||||||||| ||||||||| |||||||||  ||||||| ||||||||||||||    
T  34012 acacaagttaatgcgtcaaaagtaaaaatatttcattgtaattaatacatttgaatt 34068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 471 - 523
Target Start/End: Complemental strand, 37708594 - 37708542
Alignment:
Q  471 aagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    ||||||||||| |||||||||||||  ||||||||||||||| ||||||||||    
T  37708594 aagttaatgagccaaaagtgaaaatgatttgttgtaataaatgcatttgaatt 37708542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 523
Target Start/End: Complemental strand, 48723383 - 48723328
Alignment:
Q  468 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    |||||||||||||||  |||||| ||||||||||||||||| ||| ||||||||||    
T  48723383 cacaagttaatgagtttaaagtggaaatattttgttgtaatgaatgcatttgaatt 48723328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 523
Target Start/End: Original strand, 9658337 - 9658388
Alignment:
Q  472 agttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    ||||||||||||||||||  |||| |||||||||||| ||| ||||||||||    
T  9658337 agttaatgagtcaaaagtataaattttttgttgtaattaatgcatttgaatt 9658388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 508
Target Start/End: Original strand, 11698390 - 11698429
Alignment:
Q  469 acaagttaatgagtcaaaagtgaaaatattttgttgtaat 508  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  11698390 acaagttaatgagtcaaaattaaaaatattttgttgtaat 11698429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 523
Target Start/End: Complemental strand, 29724425 - 29724371
Alignment:
Q  469 acaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    |||||| ||| ||||||||||  ||||| ||||||||||||||| ||||||||||    
T  29724425 acaagtaaataagtcaaaagtagaaataatttgttgtaataaatgcatttgaatt 29724371  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 521
Target Start/End: Original strand, 32854262 - 32854316
Alignment:
Q  467 acacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaa 521  Q
    |||||||||||||||| ||||||| ||||| |||||| |||| ||| ||||||||    
T  32854262 acacaagttaatgagttaaaagtggaaataatttgttctaatcaatgcatttgaa 32854316  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 468 - 512
Target Start/End: Original strand, 48809865 - 48809909
Alignment:
Q  468 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaat 512  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||    
T  48809865 cacaagttaatgagtctaaagtgaaaatattttgttataataaat 48809909  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 523
Target Start/End: Original strand, 50685601 - 50685656
Alignment:
Q  468 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    |||||||||||||| |||||||| ||||| |||||||||||||||  |||||||||    
T  50685601 cacaagttaatgagccaaaagtggaaataatttgttgtaataaatgtatttgaatt 50685656  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 523
Target Start/End: Original strand, 13529361 - 13529412
Alignment:
Q  472 agttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    ||||||||||||||||||  |||| |||||||||||| ||| ||||||||||    
T  13529361 agttaatgagtcaaaagtataaattttttgttgtaattaatgcatttgaatt 13529412  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 523
Target Start/End: Complemental strand, 14112330 - 14112276
Alignment:
Q  468 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    ||||||||||||||| |||||| | ||||||||| |||||| ||||||||||||||    
T  14112330 cacaagttaatgagttaaaagt-ataatattttgctgtaatcaatacatttgaatt 14112276  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 511
Target Start/End: Complemental strand, 40227697 - 40227654
Alignment:
Q  468 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaa 511  Q
    |||||||||||||| |||||||| ||||| ||||||||||||||    
T  40227697 cacaagttaatgaggcaaaagtggaaataatttgttgtaataaa 40227654  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 523
Target Start/End: Original strand, 3527885 - 3527943
Alignment:
Q  465 agacacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    |||||||||| ||| |||| |||||  ||||||||||||||||| ||| ||||||||||    
T  3527885 agacacaagtcaataagtccaaagtagaaatattttgttgtaatcaatgcatttgaatt 3527943  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 523
Target Start/End: Complemental strand, 48546387 - 48546338
Alignment:
Q  474 ttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    ||||||||| ||||||  ||||||| |||| |||||||||||||||||||    
T  48546387 ttaatgagttaaaagtagaaatattgtgttataataaatacatttgaatt 48546338  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 523
Target Start/End: Original strand, 13902029 - 13902077
Alignment:
Q  475 taatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    |||||||||||||||  |||||||| |||||||| ||| ||||||||||    
T  13902029 taatgagtcaaaagtagaaatatttggttgtaatcaatgcatttgaatt 13902077  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 523
Target Start/End: Original strand, 23241023 - 23241075
Alignment:
Q  471 aagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    |||||||||||| |||||| |||||||||||||  ||| ||| ||||||||||    
T  23241023 aagttaatgagttaaaagtaaaaatattttgttacaattaatgcatttgaatt 23241075  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 468 - 523
Target Start/End: Complemental strand, 7509791 - 7509736
Alignment:
Q  468 cacaagttaatgagtcaaaagtgaaaatattttgttgtaataaatacatttgaatt 523  Q
    ||||||||||||||||||||||  ||||||| ||||||||| ||| ||||||||||    
T  7509791 cacaagttaatgagtcaaaagtagaaatattgtgttgtaatcaatgcatttgaatt 7509736  T

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