View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21379_low_2 (Length: 487)
Name: NF21379_low_2
Description: NF21379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21379_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 224 - 469
Target Start/End: Complemental strand, 39111529 - 39111281
Alignment:
| Q |
224 |
agactctaaactgtatcactcaagactctaaaaccaaactattccaagagttaactcacacacaatatgc-aaaagatattgtttaaacaaaaacttaag |
322 |
Q |
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| T |
39111529 |
agactctaaactgtatcactcaagactctaaaatcaaactattccaagagttaactcacacacaatatgcaaaaagatattgtttggacaaaaacttaaa |
39111430 |
T |
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| Q |
323 |
tttcacatcaatcttgagtgtgaagtaaggataaaaaatt-ccaccattgttttaactagacatatccaagttggaccaagagctataatagatggtaca |
421 |
Q |
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| T |
39111429 |
tttcacatcaatcttgagtgtgaagtaaggataaagaattcccaccattg-tttaactagacatatccaagttggaccaagagctataatagatggtaca |
39111331 |
T |
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| Q |
422 |
tgtgtgtgagagctatt-agaccctgacctta-taaaccaccaccatcat |
469 |
Q |
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| T |
39111330 |
tgtgtgtgagagctattaagaccctgaccttacaaaaccaccaccatcat |
39111281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 256 - 465
Target Start/End: Original strand, 14116819 - 14117019
Alignment:
| Q |
256 |
accaaactattccaagagttaactcacacacaatatgcaaaagatattgtttaaacaaaaacttaagtttcacatcaatcttgagtgtgaagtaaggata |
355 |
Q |
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| T |
14116819 |
accaaactattccaagagttaacttgca------atgcaaaagatattgtttcgacaaaaacttaagtttcacatcaatcttgagtgtgaagtaaggata |
14116912 |
T |
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| Q |
356 |
aaaaattccaccattgttttaactagacatatccaagttggaccaagagctataatagatggtacatgtgtgtgagagctattagaccctgaccttataa |
455 |
Q |
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| T |
14116913 |
aaaattcccagcattgtttt-act--acatatccaagttggaccaaaagttataatagatggtacacgtgtgagggagctattagatcctgaccttacaa |
14117009 |
T |
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| Q |
456 |
accaccacca |
465 |
Q |
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| T |
14117010 |
accaccacca |
14117019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 39111661 - 39111616
Alignment:
| Q |
10 |
attattctaggtttttagtgaggcttagagtaagttatttatgagt |
55 |
Q |
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| T |
39111661 |
attattctaggtttttagtgaggcttagagtgagttatttatgagt |
39111616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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