View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21379_low_3 (Length: 285)
Name: NF21379_low_3
Description: NF21379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21379_low_3 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 38565863 - 38566130
Alignment:
| Q |
18 |
gatgatagatatgagctgtcgttgatgtgacgctatattggtcatacacacatactcatatcatatgatatgatgccatacaacattcaatcatctctac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38565863 |
gatgatagatatgagctgtcgttgatgtgacgctatattggtcatacatacatactcatatcatatgatatgatgccatacaacattcaatcatctctac |
38565962 |
T |
|
| Q |
118 |
caacaatcacggtataaagtttgcactttcaaatgaacataacttgtagaaaattaaataaaagagaaaatgatctagagtgattagcaaggtaggtatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38565963 |
caacaatcacggtataaagtttgcactttcaaatgaacataacttgtagaaaattaaataaaagagaaaatgatctagagtgattagcaaggtaggtatg |
38566062 |
T |
|
| Q |
218 |
ttgaacaacaataagatgagatgcaaagtggaatatttgtaagcactttgacgccaagataataagag |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38566063 |
ttgaacaacaataagatgagatgcaaagtggaatatttgtaagcactttgacgccaagttaataagag |
38566130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University