View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21379_low_4 (Length: 274)
Name: NF21379_low_4
Description: NF21379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21379_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 4300984 - 4300774
Alignment:
| Q |
15 |
agcaaaggtttgtatttgagttgtaatggtaaatgataagaacatagcaagtggatctaatatgcaaataccatgcaaatggttaattacttacgtcaca |
114 |
Q |
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| T |
4300984 |
agcaaaggtttgtatttgagttgtaatggtaaatgataagaacatagcaagtggatctaatatgcaaataccatgcaaatggttaattacttacggcaca |
4300885 |
T |
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| Q |
115 |
agttagtttggtggtatcttgcttgcactaacacgaattggataacgagacttaaactcctaaataacacaaatcgtacgagtttctatcatattcaata |
214 |
Q |
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| T |
4300884 |
agttagtttggtggtatcttgcttgcactaacacgaattggataacgagacttaaactcctaaataacacaaatcgtacgagtttctatcatattcaata |
4300785 |
T |
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| Q |
215 |
attcatagctg |
225 |
Q |
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| T |
4300784 |
attgatagctg |
4300774 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 7467160 - 7467116
Alignment:
| Q |
31 |
tgagttgtaatggtaaatgataagaacatagcaagtggatctaat |
75 |
Q |
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| T |
7467160 |
tgagttctaatggtaaatgataagaccatagcaagtggatctaat |
7467116 |
T |
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