View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21379_low_5 (Length: 247)
Name: NF21379_low_5
Description: NF21379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21379_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 35442994 - 35443146
Alignment:
| Q |
1 |
ccacttattttacataaatatatgtatttttagcattttgtaaccaaacaaaccctatctactatttactaatcaaaaaataaaacctcattctatacaa |
100 |
Q |
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| T |
35442994 |
ccacttattttaaataaatatatgtatttttagcattttgtaaccaaacaaaccctatctactatttactaatcaaaaaataaaacctcattctatacaa |
35443093 |
T |
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| Q |
101 |
aatttccaactgcataaaaccacgagaagaaatgcaatctatacaaatataca |
153 |
Q |
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| T |
35443094 |
aatttccaactgcataaaaccacgagaagaaatgcaatctatacaaatataca |
35443146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 151 - 247
Target Start/End: Original strand, 35443205 - 35443302
Alignment:
| Q |
151 |
acaaacataaaa-aaggtaaagaacaaaggtgattcctttgtttattttcgcaaaattctattctaaatcaacaatgagtgaagtgtatcatatcatt |
247 |
Q |
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| T |
35443205 |
acaaacataaaaaaaggtaaagaacaaaggtgattcctttgtttattttcgcaaaattctattctaaatcaacaatgagtgaagtgtatcatatcatt |
35443302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 16780357 - 16780329
Alignment:
| Q |
1 |
ccacttattttacataaatatatgtattt |
29 |
Q |
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| T |
16780357 |
ccacttattttacataaatatatgtattt |
16780329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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