View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21379_low_6 (Length: 241)
Name: NF21379_low_6
Description: NF21379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21379_low_6 |
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| [»] chr8 (3 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0116 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 106 - 241
Target Start/End: Original strand, 21313132 - 21313267
Alignment:
| Q |
106 |
tgttcatggttatagtgttggtgggacttatcgttttctcacaaattctgaagaacaggtggctaatgatgcttttattgacgtgtggcacaaattggtc |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21313132 |
tgttcatggttatagtgttggtgggacttatcgttttctcacaaattctgaagaacaggtggctaatgatgtttttattgacgtgtggcacaaattggtc |
21313231 |
T |
|
| Q |
206 |
tcgacaaaagtgttgctttttgcttggcggttgctt |
241 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
21313232 |
ccgacaaaagtgtcgctttttgcttggcggttgctt |
21313267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 240
Target Start/End: Complemental strand, 8305354 - 8305220
Alignment:
| Q |
106 |
tgttcatggttatagtgttggtgggacttatcgttttctcacaaattctgaagaacaggtggctaatgatgcttttattgacgtgtggcacaaattggtc |
205 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| || |||||||||| || || |||| ||||||||| |||||||||||||| || |
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| T |
8305354 |
tgttcatgaatatagtgttggtgggacttatcgttttctcacaacttatgaagaacagttgactgatgagaattttattgatgtgtggcacaaattagtt |
8305255 |
T |
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| Q |
206 |
tcgacaaaagtgttgctttttgcttggcggttgct |
240 |
Q |
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||| |||||||| | |||||||||||||| |||| |
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| T |
8305254 |
ccgaaaaaagtgtcgttttttgcttggcggatgct |
8305220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 234
Target Start/End: Original strand, 9017417 - 9017525
Alignment:
| Q |
126 |
gtgggacttatcgttttctcacaaattctgaagaacaggtggctaatgatgcttttattgacgtgtggcacaaattggtctcgacaaaagtgttgctttt |
225 |
Q |
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|||||||||||||| ||||||||| | ||||||| ||||||| ||| | | ||||||| ||||||||||||||||| |||||||||| | ||||| |
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| T |
9017417 |
gtgggacttatcgtattctcacaactaatgaagaataggtggccgatggtacaattattgatgtgtggcacaaattggttccgacaaaagtttcactttt |
9017516 |
T |
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| Q |
226 |
tgcttggcg |
234 |
Q |
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|| |||||| |
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| T |
9017517 |
tgtttggcg |
9017525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 106 - 238
Target Start/End: Complemental strand, 17946615 - 17946483
Alignment:
| Q |
106 |
tgttcatggttatagtgttggtgggacttatcgttttctcacaaattctgaagaacaggtggctaatgatgcttttattgacgtgtggcacaaattggtc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17946615 |
tgttcatggttatagtgttggtgggacttatcgttttctcacaaattctgaagaacaggtggctaatgatgcttttattgacgtgtggcacaaattggtc |
17946516 |
T |
|
| Q |
206 |
tcgacaaaagtgttgctttttgcttggcggttg |
238 |
Q |
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|||||||||||| | ||||||||||||||||| |
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| T |
17946515 |
ccgacaaaagtgtcgttttttgcttggcggttg |
17946483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 106 - 241
Target Start/End: Complemental strand, 17696774 - 17696639
Alignment:
| Q |
106 |
tgttcatggttatagtgttggtgggacttatcgttttctcacaaattctgaagaacaggtggctaatgatgcttttattgacgtgtggcacaaattggtc |
205 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
17696774 |
tgttcatggttatagtgttggtgggacttatcgctttctcacaaattctgaagaacaggtggctaatgacgtttttattgacgtgtggcacaaattggtc |
17696675 |
T |
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| Q |
206 |
tcgacaaaagtgttgctttttgcttggcggttgctt |
241 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
17696674 |
ccgacaaaagtgtcgctttttgcttggcggttgctt |
17696639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 106 - 238
Target Start/End: Complemental strand, 2854854 - 2854722
Alignment:
| Q |
106 |
tgttcatggttatagtgttggtgggacttatcgttttctcacaaattctgaagaacaggtggctaatgatgcttttattgacgtgtggcacaaattggtc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2854854 |
tgttcatggttatagtgttggtgggacttatcgttttctcacaaattctgaagaacaggtggctaatgatgcttttcttgacgtgtggcacaaattggtt |
2854755 |
T |
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| Q |
206 |
tcgacaaaagtgttgctttttgcttggcggttg |
238 |
Q |
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|||||||||||| | ||||||||||||||||| |
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| T |
2854754 |
ccgacaaaagtgtcgttttttgcttggcggttg |
2854722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 2121512 - 2121428
Alignment:
| Q |
20 |
ttacactcgttaacatgatgaactttatataaatatttgtatagatatcctaggttatgttttatataagataaaaattactatc |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2121512 |
ttacactcgttaacatgatgaactttatataaatatttctatagatatcctaggttatgttttatataagataaaaattactatc |
2121428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 106 - 241
Target Start/End: Complemental strand, 32216320 - 32216185
Alignment:
| Q |
106 |
tgttcatggttatagtgttggtgggacttatcgttttctcacaaattctgaagaacaggtggctaatgatgcttttattgacgtgtggcacaaattggtc |
205 |
Q |
| |
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||||||||| |||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32216320 |
tgttcatggatatagtgttgatgggacttatcgttttctcacaaatttggaagtacaggtggctaatgatgcttttattgacgtgtggcacaaattggtt |
32216221 |
T |
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| Q |
206 |
tcgacaaaagtgttgctttttgcttggcggttgctt |
241 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
32216220 |
ccgacaaaagtgttgctttttgcttggcggctgctt |
32216185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 106 - 241
Target Start/End: Original strand, 27293578 - 27293717
Alignment:
| Q |
106 |
tgttcatggttatagtgttggtgggacttatcgttttctca----caaattctgaagaacaggtggctaatgatgcttttattgacgtgtggcacaaatt |
201 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||| ||||||| ||||| |
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| T |
27293578 |
tgttcatgattatagtgttggtgggacttatcgttttctcactcacaaattctgaagagcaggtggctcatgatgcttttattgacatgtggcataaatt |
27293677 |
T |
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| Q |
202 |
ggtctcgacaaaagtgttgctttttgcttggcggttgctt |
241 |
Q |
| |
|
||| ||| |||||||| |||||||||||||||||||||| |
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| T |
27293678 |
ggttccgaaaaaagtgtcgctttttgcttggcggttgctt |
27293717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 106 - 241
Target Start/End: Original strand, 12214853 - 12214988
Alignment:
| Q |
106 |
tgttcatggttatagtgttggtgggacttatcgttttctcacaaattctgaagaacaggtggctaatgatgcttttattgacgtgtggcacaaattggtc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| ||||||||||||||||| |
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| T |
12214853 |
tgttcatggttatagtgttggtgggacttatcgttttctcacaaattctgaagatcaggtggctaatgatgtttttactgatgtgtggcacaaattggtt |
12214952 |
T |
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| Q |
206 |
tcgacaaaagtgttgctttttgcttggcggttgctt |
241 |
Q |
| |
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|||||||||||| |||||||||||||| ||||||| |
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| T |
12214953 |
ccgacaaaagtgtcgctttttgcttggcagttgctt |
12214988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0116 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: scaffold0116
Description:
Target: scaffold0116; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 106 - 241
Target Start/End: Complemental strand, 42932 - 42797
Alignment:
| Q |
106 |
tgttcatggttatagtgttggtgggacttatcgttttctcacaaattctgaagaacaggtggctaatgatgcttttattgacgtgtggcacaaattggtc |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| |||||||| |
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| T |
42932 |
tgttcatggttatagtgttggtgggacttatcgttttctcacaaattctgaagaacaggtggctaatgatgtttttactgacgtggagcagaaattggtt |
42833 |
T |
|
| Q |
206 |
tcgacaaaagtgttgctttttgcttggcggttgctt |
241 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
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| T |
42832 |
ccgacaaaagtgtcactttttgcttggcggttgctt |
42797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0116; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 106 - 241
Target Start/End: Complemental strand, 46852 - 46717
Alignment:
| Q |
106 |
tgttcatggttatagtgttggtgggacttatcgttttctcacaaattctgaagaacaggtggctaatgatgcttttattgacgtgtggcacaaattggtc |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||| |||||||| |
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| T |
46852 |
tgttcatggttatagtgttggtgggacttatcgttttctcacaaattctgaagaacaggtggctaatgatgtttttactgacgtggagcagaaattggtt |
46753 |
T |
|
| Q |
206 |
tcgacaaaagtgttgctttttgcttggcggttgctt |
241 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
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| T |
46752 |
ccgacaaaagtgtcactttttgcttggcggttgctt |
46717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 17713415 - 17713283
Alignment:
| Q |
108 |
ttcatggttatagtgttggtgggacttatcgttttctcacaaattctgaagaacaggtggctaatgatgcttttattgacgtgtggcacaaattggtctc |
207 |
Q |
| |
|
||||||| | |||||||||||||||||||| ||||||||||||||||||||||||| |||| |||| | ||||||||| |||| |||||||||||| | |
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|
| T |
17713415 |
ttcatggatgtagtgttggtgggacttatcattttctcacaaattctgaagaacagttggccgatgaggattttattgatgtgtagcacaaattggttcc |
17713316 |
T |
|
| Q |
208 |
gacaaaagtgttgctttttgcttggcggttgct |
240 |
Q |
| |
|
|| |||||||| || |||||||||||||||||| |
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|
| T |
17713315 |
gaaaaaagtgtcgccttttgcttggcggttgct |
17713283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 16423868 - 16423807
Alignment:
| Q |
174 |
atgcttttattgacgtgtggcacaaattggtctcgacaaaagtgttgctttttgcttggcgg |
235 |
Q |
| |
|
||||||||||||| || |||||||||||||| || ||||||| | |||||||| ||||||| |
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|
| T |
16423868 |
atgcttttattgatgtatggcacaaattggttccgccaaaagtttcgctttttgtttggcgg |
16423807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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