View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2137_high_13 (Length: 303)

Name: NF2137_high_13
Description: NF2137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2137_high_13
NF2137_high_13
[»] chr3 (1 HSPs)
chr3 (19-303)||(48415138-48415425)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 48415138 - 48415425
Alignment:
Q  19 agaacactctcatcaaactcatttcttccttcagtctcttcttttgcttcttcttcctagcccttctcctcgaatcatgttcctccgcgaacacttgatt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48415138 agaacactctcatcaaactcatttcttccttcagtctcttcttttgcttcttcttcctagcccttctcctcgaatcatgttcctccacgaacacttgatt 48415237  T
Q  119 ctgaccaagtttgtacacagcttcaagctcacca---aagttgttgtcggaaaccaaacatctctcgttgttttccttttcatgttgttgtttttctgtt 215  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48415238 ctgaccaagtttgtacacagcttcaagctcaccagcaaagttgttgtcggaaaccaaacatctctcgttgttttccttttcatgttgttgtttttctgtt 48415337  T
Q  216 gcatcacatagcaccgtgttgttgaatgctttcctgaaaatgccaacacaaacatccgtaatgtgaacggattgaattcatatacaat 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  48415338 gcatcacatagcaccgtgttgttgaatgctttcctgaaaatgccaacacaaacatccgtaatgtgagcggatttaattcatatacaat 48415425  T

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