View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2137_high_16 (Length: 277)
Name: NF2137_high_16
Description: NF2137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2137_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 30380655 - 30380396
Alignment:
| Q |
1 |
actattcactcatttgttacctttgtgctttcttctttctccttcatcattctaaatttctaatcaggtaacgtcgttactatannnnnnnnctattggg |
100 |
Q |
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|||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||| |
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| T |
30380655 |
actattcactcatttgttac-tttatgctttcttctttctccttcatcattctaa--------tcaggtaacctcgttactatatttttttcctattggg |
30380565 |
T |
|
| Q |
101 |
ttcttttatgctttagttagttaaacaataatcgccaaacattatttaattatttattctgaatattatcaaatatgatttgttacacttagtcacttga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30380564 |
ttcttttatgctttagttagttaaacaataatcgccaaacattattttattatttattctgaataatatcaaatatgatttgttacacttagtcacttga |
30380465 |
T |
|
| Q |
201 |
atttgtgattacggtggaagattcatttgtttgggattttggtgttataaactgatttatcatattctt |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30380464 |
atttgtgattacggtggaagattcatttgtttgggattttggtgttataaactgatttatcatattctt |
30380396 |
T |
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