View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2137_high_20 (Length: 258)
Name: NF2137_high_20
Description: NF2137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2137_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 10 - 160
Target Start/End: Original strand, 3670328 - 3670481
Alignment:
| Q |
10 |
attattctagcttagcaaattttacaaattcacttcatgattcaaagctaccaacttctgaaaatcaagaacattttcagctggaca---tgatgaattc |
106 |
Q |
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| T |
3670328 |
attattctagcttagcaaattttacaaattcacttcatgattcaaagctaccaacttctgaaaatcaagaacattttcagctggacatgttgatgaattc |
3670427 |
T |
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| Q |
107 |
taaaagctttttggacagatcaattggttcaaataccaattctgaacaatacgc |
160 |
Q |
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| T |
3670428 |
tagaagctttttggacagatcaattggttcaaataccaattctgaacaatacgc |
3670481 |
T |
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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 164 - 258
Target Start/End: Original strand, 3670517 - 3670611
Alignment:
| Q |
164 |
tgaagaacatttaatttggaattagaacgttactcgttagcttggatcctttgtagtcctccggtcggtgcataaaattttgaaccattggattt |
258 |
Q |
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| T |
3670517 |
tgaagaacatttaatttggaattagaacgttactcgtcagcttggatcctctgtagtcctccagttggtgcataaaatttcgaaccattggattt |
3670611 |
T |
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