View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2137_high_24 (Length: 241)

Name: NF2137_high_24
Description: NF2137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2137_high_24
NF2137_high_24
[»] chr2 (4 HSPs)
chr2 (16-225)||(2749341-2749550)
chr2 (40-123)||(2714823-2714900)
chr2 (40-123)||(2726402-2726479)
chr2 (143-221)||(2733589-2733667)


Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 2749550 - 2749341
Alignment:
Q  16 tgtggtgggacacattatccaaggaaacatgttatatggtcatcaaatgtctcactctcaaggaatttggcatcctcaaattttaatgtcattgttcaat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2749550 tgtggtgggacacattatccaaggaaacatgttatatggtcatcaaatgtctcactctcaagtaatttggcatcctcaaattttaatgtcattgttcaat 2749451  T
Q  116 ttcaaaattttaatggaaaatctttgtcacgatatgttacacaggtgaaacaacacagaaactttacagcaggaaacctagtctgtaaaattatcacgaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2749450 ttcaaaattttaatggaaaatctttgtcacgatatgttacacaggtgaaacaacacagaaactttacagcaggaaacctagtctgtaaaattatcacgaa 2749351  T
Q  216 ccttaatatt 225  Q
    ||||||||||    
T  2749350 ccttaatatt 2749341  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 2714900 - 2714823
Alignment:
Q  40 aaacatgttatatggtcatcaaatgtctcactctcaaggaatttggcatcctcaaattttaatgtcattgttcaatttcaaaat 123  Q
    ||||||||| ||||||||||||||||||||      || ||||||||||||||||||| |||||||| || |||| ||||||||    
T  2714900 aaacatgttgtatggtcatcaaatgtctca------agtaatttggcatcctcaaattctaatgtcactgctcaacttcaaaat 2714823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 2726479 - 2726402
Alignment:
Q  40 aaacatgttatatggtcatcaaatgtctcactctcaaggaatttggcatcctcaaattttaatgtcattgttcaatttcaaaat 123  Q
    ||||||||||||||||||||||||||      |||||| ||||||||||||||||||| |||||||| || |||  ||||||||    
T  2726479 aaacatgttatatggtcatcaaatgt------ctcaagtaatttggcatcctcaaattctaatgtcactgctcagcttcaaaat 2726402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 2733667 - 2733589
Alignment:
Q  143 cacgatatgttacacaggtgaaacaacacagaaactttacagcaggaaacctagtctgtaaaattatcacgaaccttaa 221  Q
    ||||||||||||||   ||||||||||| ||||||||| ||||||||||| | ||  ||||||||||||| ||| ||||    
T  2733667 cacgatatgttacaagcgtgaaacaacatagaaactttgcagcaggaaacttggttcgtaaaattatcaccaacattaa 2733589  T

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