View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2137_low_11 (Length: 431)
Name: NF2137_low_11
Description: NF2137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2137_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 47558937 - 47559348
Alignment:
| Q |
18 |
gtaaaccgctacggatgcatctgatgcagcagataacaaatatcttccttcagttaaatcaatttgaagggaattaatggaacctttgtgaggggaaacg |
117 |
Q |
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| T |
47558937 |
gtaaaccgctacggatgcatctgatgcagcagataacaaatatcttccttcagttaaatcaatttgaagggaattaatggaacctttgtgaggggaaacg |
47559036 |
T |
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| Q |
118 |
agttctttgtgatttgataactcgagttgtgaaattcgatttgattttatgcgattagcgaaggaatttggacgcaattttccggattctctgtctttga |
217 |
Q |
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| T |
47559037 |
agttctttgtgatttgataactcgagttgtgaaattcgatttgattttatgcgattagcgaaggaatttggacgcaattttccggattctctgtctttga |
47559136 |
T |
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| Q |
218 |
tgttcttccacgtatccatattcggagcatctttgaatttttggagttcgatttcaatttcaatcagtaacaaaggttgttgctatctctggtgagtggt |
317 |
Q |
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| T |
47559137 |
tgttcttccacgtatccatattcggagcatctttgaatttttggagttcgatttcaatttcaatcagtaacaaaggttgttgctatctctggtgagtggt |
47559236 |
T |
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| Q |
318 |
gatactacggccacaaccaaagtcgtcttcttcctcctccttcactcctggaactcaagtggactcaaatgggcttgtttcatccacttagtattggact |
417 |
Q |
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| T |
47559237 |
gatactacggccacaaccaaagtcgtcttcttcctcctccttcactcctggaactcaagtggactcaaatgggcttgtttcatccacttcgtattggact |
47559336 |
T |
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| Q |
418 |
tcaattcctatg |
429 |
Q |
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| T |
47559337 |
tcaattcctatg |
47559348 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 44869391 - 44869353
Alignment:
| Q |
40 |
gatgcagcagataacaaatatcttccttcagttaaatca |
78 |
Q |
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| T |
44869391 |
gatgcagcagataacaaatatcttccttctgttaaatca |
44869353 |
T |
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