View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2137_low_12 (Length: 406)
Name: NF2137_low_12
Description: NF2137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2137_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 20 - 395
Target Start/End: Complemental strand, 29467484 - 29467106
Alignment:
| Q |
20 |
agatgcagtataaacaattcaggaggttcaaatagaaataaaatatagcagcatgtgcaattgaaaattctcttctctgcatcccctcacttatatgtgg |
119 |
Q |
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| T |
29467484 |
agatgcagtataaacaattcaggaggttcaaatagaaataaaatatagcagcatgtgcaattgaaaattctcttctctgcatcccctctcttatatgtgg |
29467385 |
T |
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| Q |
120 |
ctctgtcactgccagccaacaaagcatggagga---tatttgacttttgcactttctagtttgcattattatctctttttaaaactatcatcaatcatat |
216 |
Q |
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| T |
29467384 |
ctctgtcactgccagccaacaaagcatggaggaggatatttgacttttgcactttctagtttgcattattgtctttctttaaaactatcatcaatcatat |
29467285 |
T |
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| Q |
217 |
tttacttaccaatcaatgttcaaattaccaaagcnnnnnnncctcactgaattagagattcttcttggttatgtaccaaagaatactgttttatcactta |
316 |
Q |
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| T |
29467284 |
tttacttaccaatcaatgttcaaattaccaaagctttttttcctcactgaattagagattcttcttggttatgtaccaaagaatactgtgttatcactta |
29467185 |
T |
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| Q |
317 |
tcaatggaccaacagatacaactgcattaagttattggttgaatttgagattcttcttttgtgcactatggattttcat |
395 |
Q |
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| T |
29467184 |
tcaatggaccaacagatacaactgcattaagttattggttgaattggagattcttcttttgtgcactatggattttcat |
29467106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 326 - 399
Target Start/End: Complemental strand, 29473978 - 29473905
Alignment:
| Q |
326 |
caacagatacaactgcattaagttattggttgaatttgagattcttcttttgtgcactatggattttcatctca |
399 |
Q |
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| T |
29473978 |
caacagatacaactgcgtcgagttattggttgaactggagattcttcttttgtgcactatggattttcatctca |
29473905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 15176182 - 15176122
Alignment:
| Q |
20 |
agatgcagtataaacaattcaggaggttcaaatagaaataaaatata-gcagcatgtgcaa |
79 |
Q |
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||||||| |||||| || | |||| |||||||||||||||||||| | ||||||||||||| |
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| T |
15176182 |
agatgcaatataaaaaaattaggacgttcaaatagaaataaaatacatgcagcatgtgcaa |
15176122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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