View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2137_low_13 (Length: 405)
Name: NF2137_low_13
Description: NF2137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2137_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 22 - 281
Target Start/End: Original strand, 42899172 - 42899433
Alignment:
| Q |
22 |
tctccaatgcaactctatagtctcaagatcatgattatttaaaa--ttgttattgttcatgtttcaagaattatttatcagtaatctttacctttcacct |
119 |
Q |
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| T |
42899172 |
tctccaatgcaactctatcgtctcaaggtcatgattatttaaaaaattcttgttgttcctgtttcaagtattatttatcaatcatctttacctttcacct |
42899271 |
T |
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| Q |
120 |
tggaatactttagctatttgagacaagggaatgggttgttcacactttagctagaaaaccagagatccatccatccacgaaaacaaaatagaaacactga |
219 |
Q |
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| T |
42899272 |
tcgaatactttagctatttgagacaagggaatgggttgttcacactttagctagaaaaccagagatccatccatccacgaaaacaacatagaaacactga |
42899371 |
T |
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| Q |
220 |
tcacaactgggcggaaaacgcagacggacttgctcatcgggcgcggttaacagtgagttcaa |
281 |
Q |
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| T |
42899372 |
tcacaactgggcggaaaacgcagacggacttgctcatcgggcgcggttaacagtgagttcaa |
42899433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 322 - 399
Target Start/End: Original strand, 42899474 - 42899551
Alignment:
| Q |
322 |
tgtatctcgcacgaggatacaattccatcgcgatttgtgacgcaccagagcagagctccactacgcacttcatctcac |
399 |
Q |
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| T |
42899474 |
tgtatctcgcacgaggatacaattccatcgcgatttgtgacgcaccagagcagagctccactacgcacttcatttcac |
42899551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 19386543 - 19386499
Alignment:
| Q |
214 |
cactgatcacaactgggcggaaaacgcagacggacttgctcatcg |
258 |
Q |
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| T |
19386543 |
cactgatctcaactgcccggaaaacgcagacgaacttgctcatcg |
19386499 |
T |
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