View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2137_low_15 (Length: 346)

Name: NF2137_low_15
Description: NF2137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2137_low_15
NF2137_low_15
[»] chr4 (8 HSPs)
chr4 (95-343)||(3670732-3670982)
chr4 (289-320)||(49211849-49211880)
chr4 (283-317)||(55157627-55157661)
chr4 (19-48)||(3671048-3671077)
chr4 (288-317)||(3673427-3673456)
chr4 (289-317)||(8179912-8179940)
chr4 (289-317)||(24972272-24972300)
chr4 (289-317)||(48007294-48007322)
[»] chr8 (4 HSPs)
chr8 (66-205)||(9891792-9891921)
chr8 (232-290)||(9891982-9892040)
chr8 (19-70)||(9891706-9891757)
chr8 (289-317)||(8051935-8051963)
[»] chr7 (4 HSPs)
chr7 (289-320)||(4125478-4125509)
chr7 (289-320)||(24507866-24507897)
chr7 (289-317)||(4125745-4125773)
chr7 (289-317)||(13298777-13298805)
[»] chr5 (3 HSPs)
chr5 (289-320)||(7725536-7725567)
chr5 (289-317)||(8383971-8383999)
chr5 (289-317)||(38378220-38378248)
[»] scaffold0276 (1 HSPs)
scaffold0276 (289-319)||(2109-2139)
[»] chr6 (1 HSPs)
chr6 (289-317)||(17945301-17945329)
[»] chr3 (1 HSPs)
chr3 (289-317)||(22200607-22200635)
[»] chr2 (1 HSPs)
chr2 (289-317)||(18176881-18176909)
[»] chr1 (8 HSPs)
chr1 (289-317)||(10544172-10544200)
chr1 (289-317)||(17414743-17414771)
chr1 (289-317)||(17415358-17415386)
chr1 (289-317)||(18459589-18459617)
chr1 (289-317)||(18459751-18459779)
chr1 (289-317)||(33024673-33024701)
chr1 (289-317)||(49915876-49915904)
chr1 (289-317)||(52053867-52053895)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 95 - 343
Target Start/End: Complemental strand, 3670982 - 3670732
Alignment:
Q  95 caaggaaccatgacgagtggtttctttgatgccagcttggattctatcctttattgagtcgtagtttttattggtaactagtgtgtaagatgggcattct 194  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  3670982 caaggaactgtgacgagtggtttctttgatgccagcttggattctatcctttattgagtcgtagtttttattgacaactagtgtgtaagatgggcattct 3670883  T
Q  195 cgtgcctgtctttgttttcnnnnnnn--aataaaatacattttgttatttaaatgaaaactattattacacgaaagttaattagaaaataaacaaattat 292  Q
    ||||||||| ||| ||||          |||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| |||||||    
T  3670882 cgtgcctgttttttttttttttttttttaataaaatacattttgttatttaaatgaaaactaatattacacaaaagttaattaggaaataaataaattat 3670783  T
Q  293 acaatgaatattttatattctaatagttaaattagtagatgtctataacaa 343  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3670782 gcaatggatattttatattctaatagttaaattagtagatgtctataacaa 3670732  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 320
Target Start/End: Original strand, 49211849 - 49211880
Alignment:
Q  289 ttatacaatgaatattttatattctaatagtt 320  Q
    ||||||||||||||||||||||||||||||||    
T  49211849 ttatacaatgaatattttatattctaatagtt 49211880  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 317
Target Start/End: Complemental strand, 55157661 - 55157627
Alignment:
Q  283 aacaaattatacaatgaatattttatattctaata 317  Q
    ||||| |||||||||||||||||||||||||||||    
T  55157661 aacaatttatacaatgaatattttatattctaata 55157627  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Complemental strand, 3671077 - 3671048
Alignment:
Q  19 agacgctacctccaggcaatggttctcaac 48  Q
    ||||||||||||||||||||||||||||||    
T  3671077 agacgctacctccaggcaatggttctcaac 3671048  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 317
Target Start/End: Original strand, 3673427 - 3673456
Alignment:
Q  288 attatacaatgaatattttatattctaata 317  Q
    ||||||||||||||||||||||||||||||    
T  3673427 attatacaatgaatattttatattctaata 3673456  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Original strand, 8179912 - 8179940
Alignment:
Q  289 ttatacaatgaatattttatattctaata 317  Q
    |||||||||||||||||||||||||||||    
T  8179912 ttatacaatgaatattttatattctaata 8179940  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Original strand, 24972272 - 24972300
Alignment:
Q  289 ttatacaatgaatattttatattctaata 317  Q
    |||||||||||||||||||||||||||||    
T  24972272 ttatacaatgaatattttatattctaata 24972300  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Original strand, 48007294 - 48007322
Alignment:
Q  289 ttatacaatgaatattttatattctaata 317  Q
    |||||||||||||||||||||||||||||    
T  48007294 ttatacaatgaatattttatattctaata 48007322  T

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Target: chr8 (Bit Score: 84; Significance: 7e-40; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 66 - 205
Target Start/End: Original strand, 9891792 - 9891921
Alignment:
Q  66 agcagaatgtgaccattgttgcaaggaaccaaggaaccatgacgagtggtttctttgatgccagcttggattctatcctttattgagtcgtagtttttat 165  Q
    |||||||||||||||||||||||||||||          |||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  9891792 agcagaatgtgaccattgttgcaaggaacg---------tgacgagtggtttctttgatgc-agcttggattctatcctttattaagttgtagtttttat 9891881  T
Q  166 tggtaactagtgtgtaagatgggcattctcgtgcctgtct 205  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  9891882 tggtaactagtgtgtaagatggccattctcgtgcctgtct 9891921  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 9892040 - 9891982
Alignment:
Q  232 ttttgttatttaaatgaaaactattattacacgaaagttaattagaaaataaacaaatt 290  Q
    ||||||||||||||||||||||| |||||||| |||||||||||| ||||||| |||||    
T  9892040 ttttgttatttaaatgaaaactaatattacacaaaagttaattaggaaataaataaatt 9891982  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 9891706 - 9891757
Alignment:
Q  19 agacgctacctccaggcaatggttctcaacctggttttaactttagaagcag 70  Q
    |||||| | |||||||||||||||||||||||||||||||||||||| ||||    
T  9891706 agacgccatctccaggcaatggttctcaacctggttttaactttagaggcag 9891757  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Original strand, 8051935 - 8051963
Alignment:
Q  289 ttatacaatgaatattttatattctaata 317  Q
    |||||||||||||||||||||||||||||    
T  8051935 ttatacaatgaatattttatattctaata 8051963  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 320
Target Start/End: Complemental strand, 4125509 - 4125478
Alignment:
Q  289 ttatacaatgaatattttatattctaatagtt 320  Q
    ||||||||||||||||||||||||||||||||    
T  4125509 ttatacaatgaatattttatattctaatagtt 4125478  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 320
Target Start/End: Original strand, 24507866 - 24507897
Alignment:
Q  289 ttatacaatgaatattttatattctaatagtt 320  Q
    ||||||||||||||||||||||||||||||||    
T  24507866 ttatacaatgaatattttatattctaatagtt 24507897  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Original strand, 4125745 - 4125773
Alignment:
Q  289 ttatacaatgaatattttatattctaata 317  Q
    |||||||||||||||||||||||||||||    
T  4125745 ttatacaatgaatattttatattctaata 4125773  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Complemental strand, 13298805 - 13298777
Alignment:
Q  289 ttatacaatgaatattttatattctaata 317  Q
    |||||||||||||||||||||||||||||    
T  13298805 ttatacaatgaatattttatattctaata 13298777  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 320
Target Start/End: Complemental strand, 7725567 - 7725536
Alignment:
Q  289 ttatacaatgaatattttatattctaatagtt 320  Q
    ||||||||||||||||||||||||||||||||    
T  7725567 ttatacaatgaatattttatattctaatagtt 7725536  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Complemental strand, 8383999 - 8383971
Alignment:
Q  289 ttatacaatgaatattttatattctaata 317  Q
    |||||||||||||||||||||||||||||    
T  8383999 ttatacaatgaatattttatattctaata 8383971  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Complemental strand, 38378248 - 38378220
Alignment:
Q  289 ttatacaatgaatattttatattctaata 317  Q
    |||||||||||||||||||||||||||||    
T  38378248 ttatacaatgaatattttatattctaata 38378220  T

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Target: scaffold0276 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 319
Target Start/End: Original strand, 2109 - 2139
Alignment:
Q  289 ttatacaatgaatattttatattctaatagt 319  Q
    |||||||||||||||||||||||||||||||    
T  2109 ttatacaatgaatattttatattctaatagt 2139  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Original strand, 17945301 - 17945329
Alignment:
Q  289 ttatacaatgaatattttatattctaata 317  Q
    |||||||||||||||||||||||||||||    
T  17945301 ttatacaatgaatattttatattctaata 17945329  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Complemental strand, 22200635 - 22200607
Alignment:
Q  289 ttatacaatgaatattttatattctaata 317  Q
    |||||||||||||||||||||||||||||    
T  22200635 ttatacaatgaatattttatattctaata 22200607  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Original strand, 18176881 - 18176909
Alignment:
Q  289 ttatacaatgaatattttatattctaata 317  Q
    |||||||||||||||||||||||||||||    
T  18176881 ttatacaatgaatattttatattctaata 18176909  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Original strand, 10544172 - 10544200
Alignment:
Q  289 ttatacaatgaatattttatattctaata 317  Q
    |||||||||||||||||||||||||||||    
T  10544172 ttatacaatgaatattttatattctaata 10544200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Complemental strand, 17414771 - 17414743
Alignment:
Q  289 ttatacaatgaatattttatattctaata 317  Q
    |||||||||||||||||||||||||||||    
T  17414771 ttatacaatgaatattttatattctaata 17414743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Original strand, 17415358 - 17415386
Alignment:
Q  289 ttatacaatgaatattttatattctaata 317  Q
    |||||||||||||||||||||||||||||    
T  17415358 ttatacaatgaatattttatattctaata 17415386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Original strand, 18459589 - 18459617
Alignment:
Q  289 ttatacaatgaatattttatattctaata 317  Q
    |||||||||||||||||||||||||||||    
T  18459589 ttatacaatgaatattttatattctaata 18459617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Original strand, 18459751 - 18459779
Alignment:
Q  289 ttatacaatgaatattttatattctaata 317  Q
    |||||||||||||||||||||||||||||    
T  18459751 ttatacaatgaatattttatattctaata 18459779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Complemental strand, 33024701 - 33024673
Alignment:
Q  289 ttatacaatgaatattttatattctaata 317  Q
    |||||||||||||||||||||||||||||    
T  33024701 ttatacaatgaatattttatattctaata 33024673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Complemental strand, 49915904 - 49915876
Alignment:
Q  289 ttatacaatgaatattttatattctaata 317  Q
    |||||||||||||||||||||||||||||    
T  49915904 ttatacaatgaatattttatattctaata 49915876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Original strand, 52053867 - 52053895
Alignment:
Q  289 ttatacaatgaatattttatattctaata 317  Q
    |||||||||||||||||||||||||||||    
T  52053867 ttatacaatgaatattttatattctaata 52053895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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