View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2137_low_2 (Length: 547)
Name: NF2137_low_2
Description: NF2137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2137_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 59 - 532
Target Start/End: Complemental strand, 39839644 - 39839171
Alignment:
| Q |
59 |
cacaaaagttaaaaaagaattactatgaagcactgacacagataccagacacataaaaggaacctaccgagctacgaacaaccatggaaggtaaagcatg |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39839644 |
cacaaaagttaaaaaagaattactatgaagcactgacacagataccagacacataaaaggaacttaccgagctacgaacaaccatggaaggtaaagcatg |
39839545 |
T |
|
| Q |
159 |
atgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaa |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839544 |
atgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaa |
39839445 |
T |
|
| Q |
259 |
gcataaacaacttcacctttgaattcagaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatat |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839444 |
gcataaacaacttcacctttgaattcagaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatat |
39839345 |
T |
|
| Q |
359 |
actcaacttcatttgtcttgaccctccacaatccactggtttcatcatacttagcagattgaacacactcgttgaattgcgggttgatttcaaatttgtt |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39839344 |
actcaacttcatttgtcttgaccctccacaatccactggtttcatcatacttagcagattgaacacactcgttgaattgcgggttgatttcaaatttgtt |
39839245 |
T |
|
| Q |
459 |
agcatagttttcaaggtagcttatgaattgtttctttgaagggtattcagggaaatcttcaggcattggaaggt |
532 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39839244 |
agcatagttttcaaggtagcttatgaattgtttctttgaagggtattcagggaaatcttcaggcattggaaggt |
39839171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 59 - 486
Target Start/End: Original strand, 39733314 - 39733741
Alignment:
| Q |
59 |
cacaaaagttaaaaaagaattactatgaagcactgacacagataccagacacataaaaggaacctaccgagctacgaacaaccatggaaggtaaagcatg |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
39733314 |
cacaaaagttaaaaaagaattactatgaagcactgacacatataccagacacataaaaggaacttaccgagctacgaacaaccatggaaggtaaagcatg |
39733413 |
T |
|
| Q |
159 |
atgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaa |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39733414 |
atgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaa |
39733513 |
T |
|
| Q |
259 |
gcataaacaacttcacctttgaattcagaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatat |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39733514 |
gcataaacaacttcacctttgaattcagaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatat |
39733613 |
T |
|
| Q |
359 |
actcaacttcatttgtcttgaccctccacaatccactggtttcatcatacttagcagattgaacacactcgttgaattgcgggttgatttcaaatttgtt |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39733614 |
actcaacttcatttgtcttgaccctccacaatccactggtttcatcatacttagcagattgaacacactcgttgaattgcgggttgatttcaaatttgtt |
39733713 |
T |
|
| Q |
459 |
agcatagttttcaaggtagcttatgaat |
486 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
39733714 |
agcatagttttcaaggtagcttatgaat |
39733741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 430 - 532
Target Start/End: Original strand, 31290616 - 31290718
Alignment:
| Q |
430 |
ttgaattgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatgaattgtttctttgaagggtattcagggaaatcttcaggcattggaa |
529 |
Q |
| |
|
|||||||| |||| ||||||||||||||| | |||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
31290616 |
ttgaattgtgggtcgatttcaaatttgttcggatagttttcaaggtagtttatgaactgtttctttgaagggtattcatggaaatcttcaggcattggaa |
31290715 |
T |
|
| Q |
530 |
ggt |
532 |
Q |
| |
|
||| |
|
|
| T |
31290716 |
ggt |
31290718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 435 - 532
Target Start/End: Complemental strand, 31290181 - 31290084
Alignment:
| Q |
435 |
ttgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatgaattgtttctttgaagggtattcagggaaatcttcaggcattggaaggt |
532 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||| ||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
31290181 |
ttgcggggagatttcaaatttgttagcatagtttacaagatagtttatgaactgtttctttgaagggtattcagggaaatcttcaagcattggaaggt |
31290084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 364
Target Start/End: Complemental strand, 31290504 - 31290472
Alignment:
| Q |
332 |
tagcaacaacaagccacctacaaatatactcaa |
364 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
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|
| T |
31290504 |
tagcaacaacaagccacctacaaatattctcaa |
31290472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 123 - 509
Target Start/End: Original strand, 29857435 - 29857836
Alignment:
| Q |
123 |
taccgagctacgaacaaccatggaaggtaaagcatgatgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttc |
222 |
Q |
| |
|
|||||||||||||| ||| || |||||| | |||| |||||||| ||||||||| || ||||||||||||||||| ||||| |||||||| | ||||||| |
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|
| T |
29857435 |
taccgagctacgaagaacaatagaaggtgatgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttc |
29857534 |
T |
|
| Q |
223 |
tttccttcaaaatttttccctgacttgtaatcacaagcataaacaacttcacctttgaattcagaa---agtccttcaatttcaggagtaacacactcag |
319 |
Q |
| |
|
|| ||| |||| ||| ||||| || ||||||||||||| || || |||||| ||||||||| | | |||||||| | ||| ||||||||| | |
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|
| T |
29857535 |
ttccctctaaaactttcacctgatttataatcacaagcatgaataatttcacccttgaattcaccacctaacccttcaatataaggcacaacacactctg |
29857634 |
T |
|
| Q |
320 |
cattttcgccggtagcaacaacaagccacctacaaatatactcaacttcattt------------gtcttgaccctccacaatccactggtttcatcata |
407 |
Q |
| |
|
|||| || || |||||||| |||||| |||||||||||||||||||||||||| |||| || |||||||| ||| | || |||||||| |
|
|
| T |
29857635 |
cattctcaccagtagcaaccacaagcgacctacaaatatactcaacttcatttccattggaaacagtctcaactctccacaacccattagtctcatcata |
29857734 |
T |
|
| Q |
408 |
cttagcagattgaacacactcgttgaattgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatgaattgtttctttgaagggtattca |
507 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| | || || ||| |||||| ||| ||||||| |||||||||| || |||||| |
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|
| T |
29857735 |
tttagcagattgaacacactcgttgaatcgcgggttgatttcaaagtgtttcgcgtaggattcaagatagtttatgaactgtttctttgttggatattca |
29857834 |
T |
|
| Q |
508 |
gg |
509 |
Q |
| |
|
|| |
|
|
| T |
29857835 |
gg |
29857836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 369
Target Start/End: Complemental strand, 17408021 - 17407974
Alignment:
| Q |
322 |
ttttcgccggtagcaacaacaagccacctacaaatatactcaacttca |
369 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17408021 |
ttttcaccggtagcaaccacaagccacctacaaatatactcaacttca |
17407974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 17408175 - 17408116
Alignment:
| Q |
168 |
aagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttcc |
227 |
Q |
| |
|
||||||||| || | |||||| ||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
17408175 |
aagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttcc |
17408116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 107
Target Start/End: Original strand, 19040190 - 19040219
Alignment:
| Q |
78 |
ttactatgaagcactgacacagataccaga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
19040190 |
ttactatgaagcactgacacagataccaga |
19040219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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