View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2137_low_24 (Length: 268)

Name: NF2137_low_24
Description: NF2137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2137_low_24
NF2137_low_24
[»] chr1 (5 HSPs)
chr1 (9-258)||(36154204-36154453)
chr1 (5-115)||(28040209-28040319)
chr1 (10-58)||(41520271-41520319)
chr1 (11-129)||(7793985-7794103)
chr1 (11-89)||(37201175-37201253)
[»] chr3 (2 HSPs)
chr3 (11-243)||(6172850-6173081)
chr3 (11-243)||(6252194-6252425)
[»] chr5 (2 HSPs)
chr5 (12-117)||(434216-434321)
chr5 (7-129)||(6821234-6821356)
[»] chr8 (3 HSPs)
chr8 (147-243)||(140352-140448)
chr8 (23-115)||(4700572-4700664)
chr8 (11-115)||(24125940-24126044)
[»] chr4 (3 HSPs)
chr4 (14-110)||(24403526-24403622)
chr4 (12-85)||(12634609-12634682)
chr4 (147-225)||(23808671-23808749)
[»] chr2 (2 HSPs)
chr2 (18-115)||(45465744-45465841)
chr2 (153-225)||(8589127-8589199)
[»] chr7 (1 HSPs)
chr7 (11-115)||(19278091-19278195)
[»] chr6 (1 HSPs)
chr6 (37-115)||(32116578-32116656)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 36154453 - 36154204
Alignment:
Q  9 cgttgaaggtccctaaagaatggacctccaccaaccacaatatcttcaactgcccctcacaaccttttatcaaacaacataaatggctcctccatgtgaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  36154453 cgttgaaggtccctaaagaatggacctccaccaaccacaatatcttcaactgcccctcacaactttttatcaaacaacataaatggctcctccacgtgaa 36154354  T
Q  109 tcggttgactcatccttaggctnnnnnnncagttaggcgatactcatgcatgattgaagtggaagaagttcactcttaggaccccttagttgtgaaagaa 208  Q
    ||||||||||||||||||||||       ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36154353 tcggttgactcatccttaggctaaaaaaacagttaggcgatactcatgcatgattgaaatggaagaagttcactcttaggaccccttagttgtgaaagaa 36154254  T
Q  209 gatgaattaactcaacagctctggaaactctcttcctgcccatccctttg 258  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  36154253 gatgcattaactcaatagctctggaaactctcttcctgcccatccctttg 36154204  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 28040319 - 28040209
Alignment:
Q  5 catccgttgaaggtccctaaagaatggacctccaccaaccacaatatcttcaactgcccctcacaaccttttatcaaacaacataaatggctcctccatg 104  Q
    ||||| ||||||||||| |||||| |||||||||||||||||||| || ||||| ||  | | |||| |||||||||||| ||||     ||||||||||    
T  28040319 catccattgaaggtccccaaagaaaggacctccaccaaccacaatgtcctcaaccgcttcacgcaactttttatcaaacaccatagccacctcctccatg 28040220  T
Q  105 tgaatcggttg 115  Q
    |||||||||||    
T  28040219 tgaatcggttg 28040209  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 41520319 - 41520271
Alignment:
Q  10 gttgaaggtccctaaagaatggacctccaccaaccacaatatcttcaac 58  Q
    |||||||||||| |||||| |||||||||||||||||||| || |||||    
T  41520319 gttgaaggtcccgaaagaaaggacctccaccaaccacaatgtcctcaac 41520271  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 7794103 - 7793985
Alignment:
Q  11 ttgaaggtccctaaagaatggacctccaccaaccacaatatcttcaactgcccctcacaaccttttatcaaacaacataaatggctcctccatgtgaatc 110  Q
    ||||||||||| |||||| | |||||||||||||||||  || |||||| | || | |||   ||||||||| ||||||   | |||||||||||||||     
T  7794103 ttgaaggtccccaaagaaagaacctccaccaaccacaacgtcctcaactactccacccaattctttatcaaataacatagtcgcctcctccatgtgaatt 7794004  T
Q  111 ggttgactcatccttaggc 129  Q
    ||||| | | |||||||||    
T  7794003 ggttggcacgtccttaggc 7793985  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 37201175 - 37201253
Alignment:
Q  11 ttgaaggtccctaaagaatggacctccaccaaccacaatatcttcaactgcccctcacaaccttttatcaaacaacata 89  Q
    ||||||||||||||||||  ||| ||||||||||||||| || ||||| || || | ||||  ||||||||||| ||||    
T  37201175 ttgaaggtccctaaagaaatgacatccaccaaccacaatgtcctcaaccgctccacgcaactctttatcaaacatcata 37201253  T

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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 6173081 - 6172850
Alignment:
Q  11 ttgaaggtccctaaagaatggacctccaccaaccacaatatcttcaactgcccctcacaaccttttatcaaacaacataaatggctcctccatgtgaatc 110  Q
    ||||||||||| ||||||||||||||||  |||||||||||| ||||| || || ||||||  |||||||||||||| ||    |||||||||||||||     
T  6173081 ttgaaggtccccaaagaatggacctccataaaccacaatatcctcaaccgctccacacaactctttatcaaacaacacaaccacctcctccatgtgaatt 6172982  T
Q  111 ggttgactcatccttaggctnnnnnnncagttaggcgatactcatgcatgattgaagtggaagaagttcactcttaggaccccttagttgtgaaagaaga 210  Q
    ||||| | | | |||||| |        | || |||||||| |||||||||| ||||| ||||| | ||||||| |||| | | ||  |||| ||||||     
T  6172981 ggttggcacgttcttagg-tcaacgaaaattttggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagg 6172883  T
Q  211 tgaattaactcaacagctctggaaactctcttc 243  Q
    || |||||||||||| | |||||||||||||||    
T  6172882 tgcattaactcaacaacactggaaactctcttc 6172850  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 6252425 - 6252194
Alignment:
Q  11 ttgaaggtccctaaagaatggacctccaccaaccacaatatcttcaactgcccctcacaaccttttatcaaacaacataaatggctcctccatgtgaatc 110  Q
    ||||||||||| |||||||||||||| |  |||||||||||| |||||  | || ||||||  |||||||||||||| ||  | ||||||||||||||||    
T  6252425 ttgaaggtccccaaagaatggacctcaataaaccacaatatcctcaaccactccacacaactctttatcaaacaacacaatcgcctcctccatgtgaatc 6252326  T
Q  111 ggttgactcatccttaggctnnnnnnncagttaggcgatactcatgcatgattgaagtggaagaagttcactcttaggaccccttagttgtgaaagaaga 210  Q
    ||||| | | | |||||| |        | || |||||||| |||||||||| ||||| ||||| | ||||||| |||| | | ||  |||| ||||||     
T  6252325 ggttggcacgttcttagg-tcaaagaaaattttggcgatacccatgcatgatcgaagtagaagatgctcactctgaggatctcgtaactgtggaagaagt 6252227  T
Q  211 tgaattaactcaacagctctggaaactctcttc 243  Q
    || |||||||||||| | |||||||||||||||    
T  6252226 tgcattaactcaacaacactggaaactctcttc 6252194  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 434216 - 434321
Alignment:
Q  12 tgaaggtccctaaagaatggacctccaccaaccacaatatcttcaactgcccctcacaaccttttatcaaacaacataaatggctcctccatgtgaatcg 111  Q
    |||||||||| |||||| |||||||||| |||||||||||| |||||||| || ||||||  |||||| |||||||||   | |||||||||||||| ||    
T  434216 tgaaggtccccaaagaacggacctccacaaaccacaatatcctcaactgctccacacaactctttatcgaacaacatagtcgtctcctccatgtgaaccg 434315  T
Q  112 gttgac 117  Q
    ||||||    
T  434316 gttgac 434321  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 129
Target Start/End: Complemental strand, 6821356 - 6821234
Alignment:
Q  7 tccgttgaaggtccctaaagaatggacctccaccaaccacaatatcttcaactgcccctcacaaccttttatcaaacaacataaatggctcctccatgtg 106  Q
    |||||||||||||||||||||| ||| | ||| |||| |||||||| |||||  | || ||||||  |||||| |||||||||   |  || ||||||||    
T  6821356 tccgttgaaggtccctaaagaaaggatccccatcaacaacaatatcctcaaccactccacacaactctttatcgaacaacatagtcgcttcttccatgtg 6821257  T
Q  107 aatcggttgactcatccttaggc 129  Q
    ||| ||||| | |||||||||||    
T  6821256 aattggttggcacatccttaggc 6821234  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 140352 - 140448
Alignment:
Q  147 gatactcatgcatgattgaagtggaagaagttcactcttaggaccccttagttgtgaaagaagatgaattaactcaacagctctggaaactctcttc 243  Q
    ||||| |||||||||| ||||| ||||||| ||||||| |||| | ||||| |||| ||||| ||| |||||||||||||  |||||| ||||||||    
T  140352 gatacccatgcatgatcgaagtagaagaagctcactctaaggatcacttagctgtggaagaaaatgcattaactcaacagtcctggaagctctcttc 140448  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 4700572 - 4700664
Alignment:
Q  23 aaagaatggacctccaccaaccacaatatcttcaactgcccctcacaaccttttatcaaacaacataaatggctcctccatgtgaatcggttg 115  Q
    |||||| ||| |||||||||||||||| | |||||||||||||||||||  ||||| |||||||| | |   |||||||||||||||| ||||    
T  4700572 aaagaaaggatctccaccaaccacaatgttttcaactgcccctcacaactctttattaaacaacaaagacacctcctccatgtgaatcagttg 4700664  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 24125940 - 24126044
Alignment:
Q  11 ttgaaggtccctaaagaatggacctccaccaaccacaatatcttcaactgcccctcacaaccttttatcaaacaacataaatggctcctccatgtgaatc 110  Q
    ||||||||||| |||||| |||||||||||||||||||| || ||||| || || | || |  ||||||||||||| ||   | ||||||||||||| ||    
T  24125940 ttgaaggtccccaaagaaaggacctccaccaaccacaatgtcctcaaccgctccacgcagctctttatcaaacaacttagcagcctcctccatgtgattc 24126039  T
Q  111 ggttg 115  Q
    |||||    
T  24126040 ggttg 24126044  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 24403526 - 24403622
Alignment:
Q  14 aaggtccctaaagaatggacctccaccaaccacaatatcttcaactgcccctcacaaccttttatcaaacaacataaatggctcctccatgtgaatc 110  Q
    |||||||| |||||| |||||||||| ||||||||| ||||||| ||| ||||||| |  ||||| ||| ||||||  || ||||||||||||||||    
T  24403526 aaggtccccaaagaaaggacctccactaaccacaatctcttcaattgctcctcacatctctttattaaataacatagttgcctcctccatgtgaatc 24403622  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 12634609 - 12634682
Alignment:
Q  12 tgaaggtccctaaagaatggacctccaccaaccacaatatcttcaactgcccctcacaaccttttatcaaacaa 85  Q
    ||||||||||| || || ||||||| |||| ||||||||||||||||  ||| || |||| |||||||||||||    
T  12634609 tgaaggtccctcaataaaggacctctaccagccacaatatcttcaaccacccatcccaactttttatcaaacaa 12634682  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 23808749 - 23808671
Alignment:
Q  147 gatactcatgcatgattgaagtggaagaagttcactcttaggaccccttagttgtgaaagaagatgaattaactcaaca 225  Q
    |||||||||||||| | ||||| ||| ||| ||||  | |||||||||||  |||| ||||||||| ||||||||||||    
T  23808749 gatactcatgcatggtcgaagtagaataagctcacgttgaggaccccttaactgtggaagaagatgtattaactcaaca 23808671  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 45465744 - 45465841
Alignment:
Q  18 tccctaaagaatggacctccaccaaccacaatatcttcaactgcccctcacaaccttttatcaaacaacataaatggctcctccatgtgaatcggttg 115  Q
    |||| |||||| | |||||||||||||||||||||| |||| ||| ||| ||||  |||||||||||| ||| ||| ||| | ||||| |||| ||||    
T  45465744 tccccaaagaaagaacctccaccaaccacaatatctccaaccgccactctcaactctttatcaaacaaaatagatgcctctttcatgtaaatcagttg 45465841  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 8589127 - 8589199
Alignment:
Q  153 catgcatgattgaagtggaagaagttcactcttaggaccccttagttgtgaaagaagatgaattaactcaaca 225  Q
    |||||||||| ||||| || |||||||||||  |||| |||||| ||||| ||||| ||| ||||||||||||    
T  8589127 catgcatgatcgaagtagaggaagttcactcggaggatcccttaattgtggaagaatatgcattaactcaaca 8589199  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 19278091 - 19278195
Alignment:
Q  11 ttgaaggtccctaaagaatggacctccaccaaccacaatatcttcaactgcccctcacaaccttttatcaaacaacataaatggctcctccatgtgaatc 110  Q
    ||||||||||| |||||| |||||||||||||||||||| || ||||| |   | | || |  ||||| ||||||||||   | ||||||||||||||||    
T  19278091 ttgaaggtccccaaagaaaggacctccaccaaccacaatgtcctcaaccgtttcacgcagctctttattaaacaacatagccgcctcctccatgtgaatc 19278190  T
Q  111 ggttg 115  Q
    |||||    
T  19278191 ggttg 19278195  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 32116578 - 32116656
Alignment:
Q  37 caccaaccacaatatcttcaactgcccctcacaaccttttatcaaacaacataaatggctcctccatgtgaatcggttg 115  Q
    ||||||||||||| || ||||| || || | ||||  ||||||||||||||||   | |||||||||||||||||||||    
T  32116578 caccaaccacaatgtcctcaaccgctccacccaactctttatcaaacaacatagtcgcctcctccatgtgaatcggttg 32116656  T

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