View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2137_low_25 (Length: 265)

Name: NF2137_low_25
Description: NF2137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2137_low_25
NF2137_low_25
[»] chr3 (3 HSPs)
chr3 (163-199)||(48744307-48744343)
chr3 (162-199)||(33994704-33994741)
chr3 (163-199)||(32827327-32827363)
[»] chr1 (4 HSPs)
chr1 (163-199)||(7785298-7785334)
chr1 (163-199)||(26756024-26756060)
chr1 (162-199)||(48242614-48242651)
chr1 (171-199)||(5040599-5040627)
[»] scaffold0058 (1 HSPs)
scaffold0058 (162-199)||(14503-14540)
[»] chr8 (3 HSPs)
chr8 (162-199)||(9014750-9014787)
chr8 (162-199)||(32967300-32967337)
chr8 (162-199)||(44790445-44790482)
[»] chr7 (6 HSPs)
chr7 (162-199)||(7456607-7456644)
chr7 (162-199)||(18235237-18235274)
chr7 (162-199)||(21387503-21387540)
chr7 (171-199)||(2842075-2842103)
chr7 (171-199)||(27234559-27234587)
chr7 (163-199)||(47454052-47454088)
[»] chr6 (1 HSPs)
chr6 (162-199)||(31265826-31265863)
[»] chr4 (3 HSPs)
chr4 (162-199)||(29815096-29815133)
chr4 (162-199)||(48740567-48740604)
chr4 (162-198)||(40881216-40881252)
[»] chr2 (2 HSPs)
chr2 (163-200)||(13375211-13375248)
chr2 (163-199)||(28925871-28925907)
[»] chr5 (2 HSPs)
chr5 (163-199)||(6610885-6610921)
chr5 (163-199)||(7613755-7613791)


Alignment Details
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 48744307 - 48744343
Alignment:
Q  163 cactttaaatttatgatagtggagaatgcatcaatac 199  Q
    ||||||| |||||||||||||||||||||||||||||    
T  48744307 cactttacatttatgatagtggagaatgcatcaatac 48744343  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 33994704 - 33994741
Alignment:
Q  162 ccactttaaatttatgatagtggagaatgcatcaatac 199  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  33994704 ccactttacatttatgatagtggagaatgcaccaatac 33994741  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 32827363 - 32827327
Alignment:
Q  163 cactttaaatttatgatagtggagaatgcatcaatac 199  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  32827363 cactttacatttatgatagtggagaatgcaccaatac 32827327  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 7785334 - 7785298
Alignment:
Q  163 cactttaaatttatgatagtggagaatgcatcaatac 199  Q
    ||||||| |||||||||||||||||||||||||||||    
T  7785334 cactttacatttatgatagtggagaatgcatcaatac 7785298  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 26756024 - 26756060
Alignment:
Q  163 cactttaaatttatgatagtggagaatgcatcaatac 199  Q
    ||||||| |||||||||||||||||||||||||||||    
T  26756024 cactttatatttatgatagtggagaatgcatcaatac 26756060  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 48242651 - 48242614
Alignment:
Q  162 ccactttaaatttatgatagtggagaatgcatcaatac 199  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  48242651 ccactttacatttatgatagtggaggatgcatcaatac 48242614  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 5040627 - 5040599
Alignment:
Q  171 atttatgatagtggagaatgcatcaatac 199  Q
    |||||||||||||||||||||||||||||    
T  5040627 atttatgatagtggagaatgcatcaatac 5040599  T

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Target: scaffold0058 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 14503 - 14540
Alignment:
Q  162 ccactttaaatttatgatagtggagaatgcatcaatac 199  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  14503 ccactttacatttatgacagtggagaatgcatcaatac 14540  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 9014750 - 9014787
Alignment:
Q  162 ccactttaaatttatgatagtggagaatgcatcaatac 199  Q
    |||||||  |||||||||||||||||||||||||||||    
T  9014750 ccactttgcatttatgatagtggagaatgcatcaatac 9014787  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 32967337 - 32967300
Alignment:
Q  162 ccactttaaatttatgatagtggagaatgcatcaatac 199  Q
    ||||||||||||||||||||||||||||| | ||||||    
T  32967337 ccactttaaatttatgatagtggagaatggaccaatac 32967300  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 44790482 - 44790445
Alignment:
Q  162 ccactttaaatttatgatagtggagaatgcatcaatac 199  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  44790482 ccactttacatttatgatagtggagaatgcaccaatac 44790445  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 7456644 - 7456607
Alignment:
Q  162 ccactttaaatttatgatagtggagaatgcatcaatac 199  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  7456644 ccactttatatttatgatagtggagaatacatcaatac 7456607  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 18235237 - 18235274
Alignment:
Q  162 ccactttaaatttatgatagtggagaatgcatcaatac 199  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  18235237 ccactttacatttatgatagtggagaatgcaccaatac 18235274  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 21387540 - 21387503
Alignment:
Q  162 ccactttaaatttatgatagtggagaatgcatcaatac 199  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  21387540 ccactttacatttatgatagtggagaatgcaccaatac 21387503  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 2842103 - 2842075
Alignment:
Q  171 atttatgatagtggagaatgcatcaatac 199  Q
    |||||||||||||||||||||||||||||    
T  2842103 atttatgatagtggagaatgcatcaatac 2842075  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 27234559 - 27234587
Alignment:
Q  171 atttatgatagtggagaatgcatcaatac 199  Q
    |||||||||||||||||||||||||||||    
T  27234559 atttatgatagtggagaatgcatcaatac 27234587  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 47454052 - 47454088
Alignment:
Q  163 cactttaaatttatgatagtggagaatgcatcaatac 199  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  47454052 cactttacatttatgatagtggagaatgcaccaatac 47454088  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 31265826 - 31265863
Alignment:
Q  162 ccactttaaatttatgatagtggagaatgcatcaatac 199  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  31265826 ccactttacatttatgatagtggagaatgcaccaatac 31265863  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 29815133 - 29815096
Alignment:
Q  162 ccactttaaatttatgatagtggagaatgcatcaatac 199  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  29815133 ccactttagatttatgatagtggagaatgcatgaatac 29815096  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 199
Target Start/End: Original strand, 48740567 - 48740604
Alignment:
Q  162 ccactttaaatttatgatagtggagaatgcatcaatac 199  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  48740567 ccactttacatttatgatagtggagaatgcaccaatac 48740604  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 40881252 - 40881216
Alignment:
Q  162 ccactttaaatttatgatagtggagaatgcatcaata 198  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  40881252 ccactttacatttatgatagtggagaatacatcaata 40881216  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 13375248 - 13375211
Alignment:
Q  163 cactttaaatttatgatagtggagaatgcatcaatacc 200  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  13375248 cactttacatttatgatagtggagaatgcaccaatacc 13375211  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 28925907 - 28925871
Alignment:
Q  163 cactttaaatttatgatagtggagaatgcatcaatac 199  Q
    ||||||| | |||||||||||||||||||||||||||    
T  28925907 cactttacaattatgatagtggagaatgcatcaatac 28925871  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 6610885 - 6610921
Alignment:
Q  163 cactttaaatttatgatagtggagaatgcatcaatac 199  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  6610885 cactttacatttatgatagtggagaatgcaccaatac 6610921  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 7613755 - 7613791
Alignment:
Q  163 cactttaaatttatgatagtggagaatgcatcaatac 199  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  7613755 cactttacatttatgatagtggagaatgcaccaatac 7613791  T

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