View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2137_low_28 (Length: 251)
Name: NF2137_low_28
Description: NF2137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2137_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 51527794 - 51527554
Alignment:
| Q |
17 |
agtttgtgaacacactcaccatattaatcaaggaataagatcatcgtttctgtgctaatgtcagggttcagaaaatgttggagggaaattgaattgatgt |
116 |
Q |
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| T |
51527794 |
agtttgtgaacacactcaccatattaatcaaggaataagatcatcgttgctgtggtaatgttagggttcagaaaatgttggagggaaattgaattgatgt |
51527695 |
T |
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| Q |
117 |
gattgatctaataagaagaaaacgggtcggagtagattgtgatcagaatattatgggctttttaaatcactacaccgtcttttccttattgctgc----- |
211 |
Q |
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|| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51527694 |
gagtgatataataagaagaaaacggatcggagtagattgtgatcagaatattatgggctttttaaatcactacaccgtcttttccttattgctgctgctg |
51527595 |
T |
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| Q |
212 |
----tgctaaatgcacatccctactcccaagtccgcgccca |
248 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
51527594 |
ctgctgctaaatgcacatccctactcccaagtccgcgccca |
51527554 |
T |
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