View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2137_low_3 (Length: 546)

Name: NF2137_low_3
Description: NF2137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2137_low_3
NF2137_low_3
[»] chr5 (13 HSPs)
chr5 (233-530)||(3286591-3286888)
chr5 (59-233)||(21256587-21256760)
chr5 (60-231)||(21254116-21254286)
chr5 (60-231)||(26873161-26873331)
chr5 (60-200)||(31339169-31339309)
chr5 (245-342)||(3282577-3282674)
chr5 (151-231)||(43233881-43233963)
chr5 (150-230)||(4730660-4730741)
chr5 (416-530)||(3282402-3282516)
chr5 (194-231)||(41949333-41949370)
chr5 (194-231)||(41951731-41951768)
chr5 (83-143)||(15531475-15531535)
chr5 (83-133)||(15531594-15531644)
[»] scaffold0862 (1 HSPs)
scaffold0862 (59-231)||(189-360)
[»] scaffold0525 (1 HSPs)
scaffold0525 (59-231)||(2028-2199)
[»] chr7 (6 HSPs)
chr7 (59-231)||(41832573-41832744)
chr7 (60-231)||(41830168-41830338)
chr7 (60-232)||(8083388-8083559)
chr7 (73-232)||(25432047-25432206)
chr7 (151-231)||(7737367-7737449)
chr7 (151-205)||(23613779-23613833)
[»] chr1 (5 HSPs)
chr1 (60-231)||(18705708-18705878)
chr1 (60-133)||(12436186-12436259)
chr1 (192-231)||(2427330-2427369)
chr1 (60-143)||(50038529-50038613)
chr1 (68-133)||(35267574-35267639)
[»] chr4 (12 HSPs)
chr4 (59-233)||(2546987-2547160)
chr4 (151-231)||(35783779-35783859)
chr4 (1-59)||(31482196-31482254)
chr4 (151-231)||(5444778-5444859)
chr4 (60-233)||(20880036-20880209)
chr4 (151-232)||(27510482-27510565)
chr4 (60-133)||(20879962-20880035)
chr4 (151-231)||(4167574-4167654)
chr4 (6-54)||(31162335-31162383)
chr4 (170-231)||(5440902-5440964)
chr4 (1-59)||(31529210-31529268)
chr4 (1-53)||(31476366-31476418)
[»] chr8 (7 HSPs)
chr8 (59-231)||(7275144-7275315)
chr8 (60-231)||(7277749-7277919)
chr8 (61-231)||(13856639-13856809)
chr8 (82-224)||(3567495-3567639)
chr8 (167-224)||(29864498-29864555)
chr8 (194-231)||(5690859-5690896)
chr8 (202-231)||(12464815-12464844)
[»] chr2 (6 HSPs)
chr2 (58-231)||(31180184-31180355)
chr2 (59-231)||(24039425-24039596)
chr2 (60-231)||(24038231-24038401)
chr2 (59-231)||(31269463-31269633)
chr2 (242-530)||(32746559-32746842)
chr2 (82-233)||(36402682-36402832)
[»] scaffold0023 (1 HSPs)
scaffold0023 (60-231)||(111544-111714)
[»] chr6 (10 HSPs)
chr6 (60-231)||(30689634-30689804)
chr6 (60-231)||(8655827-8655991)
chr6 (141-231)||(6825508-6825597)
chr6 (151-231)||(24249778-24249858)
chr6 (141-231)||(6823035-6823124)
chr6 (1-59)||(12781427-12781485)
chr6 (170-231)||(4555749-4555810)
chr6 (151-224)||(1136235-1136309)
chr6 (1-59)||(12785617-12785675)
chr6 (76-113)||(31792317-31792354)
[»] scaffold0251 (1 HSPs)
scaffold0251 (60-197)||(4583-4719)
[»] chr3 (15 HSPs)
chr3 (60-231)||(10018777-10018948)
chr3 (60-231)||(10256091-10256262)
chr3 (60-231)||(10179974-10180145)
chr3 (94-231)||(10123317-10123454)
chr3 (151-231)||(782838-782918)
chr3 (68-231)||(8504202-8504365)
chr3 (60-231)||(19954451-19954622)
chr3 (153-231)||(10514351-10514429)
chr3 (151-231)||(10661756-10661836)
chr3 (151-231)||(10511027-10511106)
chr3 (151-232)||(10613345-10613426)
chr3 (194-233)||(17743104-17743143)
chr3 (194-233)||(19044424-19044463)
chr3 (60-133)||(10744728-10744802)
chr3 (151-231)||(27825693-27825774)
[»] scaffold0655 (1 HSPs)
scaffold0655 (59-230)||(611-782)
[»] scaffold0001 (2 HSPs)
scaffold0001 (141-233)||(144659-144750)
scaffold0001 (141-231)||(146720-146809)
[»] scaffold0959 (1 HSPs)
scaffold0959 (181-231)||(408-458)


Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 233 - 530
Target Start/End: Complemental strand, 3286888 - 3286591
Alignment:
Q  233 agagattgaaacttacagaaattgcagaaggcataccgacaacgggatcttcaaagaatttatttgctagagccaaggcaaggagactactttgcattcc 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3286888 agagattgaaacttacagaaattgcagaaggcataccgacaacgggatcttcaaagaatttatttgctagagccaaggcaaggagactactttgcattcc 3286789  T
Q  333 tgcagttggacaaatgaatttatttaacaaagttacatatgctactacaaacatctgatggatgaacaatggagaaattaaagttgtacctgtctcaaag 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3286788 tgcagttggacaaatgaatttatttaacaaagttacatatgctactacaaacatctgatggatgaacaatggagaaattaaagttgtacctgtctcaaag 3286689  T
Q  433 gaaattgttctctgcagtggcttcacatcaggtgagtcacggaagatgaatccactaagaatataaccagaaacgaaagatgacaaatgaaaagcaac 530  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3286688 gaaattgttctctgcagtggcttcacatcaggtgagtcacggaagatgaatccactaagaatataaccagaaacgaaagatgacaaatgaaaagcaac 3286591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 59 - 233
Target Start/End: Original strand, 21256587 - 21256760
Alignment:
Q  59 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaat 158  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  21256587 ctattagagatatagattagtagcatattagtcatagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctca-ttttgtaat 21256685  T
Q  159 attcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaacaca 233  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21256686 attccattttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaacaca 21256760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 60 - 231
Target Start/End: Original strand, 21254116 - 21254286
Alignment:
Q  60 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaata 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||    
T  21254116 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccgccccattagagggaacttttctca-ttttgtaata 21254214  T
Q  160 ttcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21254215 ttcctttttcatcaatagaaagagtttgttacttttctctccttccttccatggatgccatgtttcctaaca 21254286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 26873331 - 26873161
Alignment:
Q  60 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaata 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||  |||||||||  ||||||||||| ||| ||||||    
T  26873331 tattagagatatagattagtagcatattagtcctagtagagagtagtaaaaataacttgtaatcattccattagaggaaacttttctca-tttcgtaata 26873233  T
Q  160 ttcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    |||  ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26873232 ttctatttccatcaatagaaagagtttcttagttttctctccttccttccatggatgccatgtttcctaaca 26873161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 60 - 200
Target Start/End: Complemental strand, 31339309 - 31339169
Alignment:
Q  60 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagag-aacttttctcatttttgtaat 158  Q
    |||||||||||| || || ||  ||||||||||||||||||||||||||||||||||||||||||||||||||| | |  | ||  |||| |||||||||    
T  31339309 tattagagatattgaataatattatattagtcctagtagagagtagtataaataacttgtaaccaccccattagtgggtcaattcactca-ttttgtaat 31339211  T
Q  159 attcctttttcatcaatagaaagagtttgttagttttctctc 200  Q
    ||||  ||| |||| ||||||||||||| |||||||||||||    
T  31339210 attcaatttccatcgatagaaagagtttcttagttttctctc 31339169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 245 - 342
Target Start/End: Complemental strand, 3282674 - 3282577
Alignment:
Q  245 ttacagaaattgcagaaggcataccgacaacgggatcttcaaagaatttatttgctagagccaaggcaaggagactactttgcattcctgcagttgga 342  Q
    |||| |||||||||| ||||||||| ||||| |||||||||||||| ||||| || ||||||| ||||||||| |||||||||||||||| |||||||    
T  3282674 ttaccgaaattgcaggaggcatacccacaactggatcttcaaagaacttattagcaagagccagggcaaggaggctactttgcattcctgtagttgga 3282577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 151 - 231
Target Start/End: Original strand, 43233881 - 43233963
Alignment:
Q  151 tttgtaatattc--ctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||||||||||  |||| ||||||||||||||| | | | ||||||||||| ||||||||||||||||||||||||||||||    
T  43233881 tttgtaatattcaactttatcatcaatagaaagattctttgagttttctctcattccttccatggatgccatgtttcctaaca 43233963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 4730660 - 4730741
Alignment:
Q  150 ttttgtaatattcctttttcatcaatagaaagagtttgttag--ttttctctccttccttccatggatgccatgtttcctaac 230  Q
    |||||||||||||| ||| |||||||| ||||||||||||||  |||| ||||||| | ||||||||||||||||||||||||    
T  4730660 ttttgtaatattccatttccatcaatacaaagagtttgttagctttttttctcctt-catccatggatgccatgtttcctaac 4730741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 416 - 530
Target Start/End: Complemental strand, 3282516 - 3282402
Alignment:
Q  416 ttgtacctgtctcaaaggaaattgttctctgcagtggcttcacatcaggtgagtcacggaagatgaatccactaagaatataaccagaaacgaaagatga 515  Q
    |||||||||||||||||||||||||||  || |||||||| |||||||| || || |||||||   ||||||| || ||||| ||||  |  |||| |||    
T  3282516 ttgtacctgtctcaaaggaaattgttcgttgtagtggctttacatcaggagaatcgcggaagacagatccacttagcatatagccagctataaaagctga 3282417  T
Q  516 caaatgaaaagcaac 530  Q
    ||||||||| |||||    
T  3282416 caaatgaaaggcaac 3282402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 41949370 - 41949333
Alignment:
Q  194 ttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  41949370 ttctctcattccttccatggatgccatgtttcctaaca 41949333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 41951768 - 41951731
Alignment:
Q  194 ttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  41951768 ttctctcattccttccatggatgccatgtttcctaaca 41951731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 15531535 - 15531475
Alignment:
Q  83 atattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttt 143  Q
    |||||||||||| |||| |||| ||||||||  |||||||||||||||||| | |||||||    
T  15531535 atattagtcctaatagatagtactataaatagtttgtaaccaccccattagtgggaacttt 15531475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 15531644 - 15531594
Alignment:
Q  83 atattagtcctagtagagagtagtataaataacttgtaaccaccccattag 133  Q
    |||||||||||| |||| |||| |||||||| ||||||||||||| |||||    
T  15531644 atattagtcctaatagatagtactataaatagcttgtaaccacccaattag 15531594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 145; Significance: 5e-76; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 59 - 231
Target Start/End: Original strand, 189 - 360
Alignment:
Q  59 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaat 158  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  189 ctattagagatatagattagtagcatattagtcctagtagagaatagtataaataacttgtaaccaccccattagagggaacttttctca-ttttgtaat 287  T
Q  159 attcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  288 attccattttcatcaatagaaagagtttcttagttttctctccttcctttcatggatgccatgtttcctaaca 360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 59 - 231
Target Start/End: Complemental strand, 2199 - 2028
Alignment:
Q  59 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaat 158  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  2199 ctattagagatatagattaatagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctca-ttttgtaat 2101  T
Q  159 attcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  2100 attccatttccatcaatagaaagagtttcttagttttctctccttccttccatggatgccatgtttcccaaca 2028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 1e-73; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 59 - 231
Target Start/End: Original strand, 41832573 - 41832744
Alignment:
Q  59 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaat 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||    
T  41832573 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggtacttttctca-ttttgtaat 41832671  T
Q  159 attcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||  |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  41832672 attcaattttcatcaatagaaagagtttcttagttttctctcattccttccatggatgccatgtttcctaaca 41832744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 60 - 231
Target Start/End: Original strand, 41830168 - 41830338
Alignment:
Q  60 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaata 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  41830168 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctca-ttttgtaata 41830266  T
Q  160 ttcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    |||  ||| |||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||    
T  41830267 ttcaatttacatcaatagaaagagtttcttagttttctctcattccttccatggatgacatgtttcctaaca 41830338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 60 - 232
Target Start/End: Complemental strand, 8083559 - 8083388
Alignment:
Q  60 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaata 159  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||| ||| ||||||||||    
T  8083559 tattaaagatatagattagtagcatattagtcctagtaaagagtagtataaataacttctaaccaccccattagagggaacttttgtca-ttttgtaata 8083461  T
Q  160 ttcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaacac 232  Q
    || | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8083460 tttcattttcatcaatagaaagagttttttagttttctctccttccttccatggatgccatgtttcctaacac 8083388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 73 - 232
Target Start/End: Original strand, 25432047 - 25432206
Alignment:
Q  73 gattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttt-tctcatttttgtaatattcctttttcat 171  Q
    ||||||| | |||||||||||| |||| |||| |||||||| ||||||||||||||||||| | | |||||  ||||  || |||||||||  ||| |||    
T  25432047 gattagtggtatattagtcctaatagatagtactataaatagcttgtaaccaccccattagtgggcactttcactca--ttcgtaatattcaatttccat 25432144  T
Q  172 caatagaaag-agtttgttagttttctctccttccttccatggatgccatgtttcctaacac 232  Q
    ||||| |||| | |||| ||  |||||||| |||||||||||||||||||||||| ||||||    
T  25432145 caatataaagaactttgctacatttctctcattccttccatggatgccatgtttcataacac 25432206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 231
Target Start/End: Original strand, 7737367 - 7737449
Alignment:
Q  151 tttgtaatattc-ctttt-tcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    |||||||||||| ||||| ||||||||||||||| | | ||||||||||||| |||||||  |||||  ||||||||||||||    
T  7737367 tttgtaatattcacttttatcatcaatagaaagattctcttagttttctctcattccttcattggatatcatgtttcctaaca 7737449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 23613779 - 23613833
Alignment:
Q  151 tttgtaatattcctttttcatcaatagaaagagtttgttagttttctctccttcc 205  Q
    ||||||||||| | ||| |||||||| |||||||||||||||||||||| |||||    
T  23613779 tttgtaatatttcatttccatcaataaaaagagtttgttagttttctctacttcc 23613833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 4e-73; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 18705878 - 18705708
Alignment:
Q  60 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaata 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  18705878 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctca-ttttgtaata 18705780  T
Q  160 ttcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    |||  |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||    
T  18705779 ttctattttcatcaatagaaagagtttcttagttttctctccttcctttcatggatgccatgttttctaaca 18705708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 12436186 - 12436259
Alignment:
Q  60 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattag 133  Q
    |||| ||||||||||||||| |||||||||| |||||| | ||||||||||||| || ||||||||||||||||    
T  12436186 tattggagatatagattagtggcatattagttctagtaaatagtagtataaatagctagtaaccaccccattag 12436259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 2427330 - 2427369
Alignment:
Q  192 ttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  2427330 ttttctctcattccttccatggatgccatgtttcctaaca 2427369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 50038529 - 50038613
Alignment:
Q  60 tattagagatata-gattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttt 143  Q
    ||||||||||||| ||||||| | |||||||||||| |||| ||||  | ||||| |||||||| |||||||||| | |||||||    
T  50038529 tattagagatataagattagtggtatattagtcctaatagatagtaccaaaaatagcttgtaactaccccattagtgggaacttt 50038613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 35267639 - 35267574
Alignment:
Q  68 atatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattag 133  Q
    |||||||| |||  || |||| |||||||||  | |||||||||||||||||||| ||||||||||    
T  35267639 atatagatgagtgacacattaatcctagtaggcattagtataaataacttgtaacaaccccattag 35267574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 2e-72; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 59 - 233
Target Start/End: Original strand, 2546987 - 2547160
Alignment:
Q  59 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaat 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  2546987 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctca-ttttgtaat 2547085  T
Q  159 attcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaacaca 233  Q
    ||||| |||  ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  2547086 attccatttctatcaatacaaagagtttgttagatttctctccttccttccatggatgtcatgtttcctaacaca 2547160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 151 - 231
Target Start/End: Original strand, 35783779 - 35783859
Alignment:
Q  151 tttgtaatattcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||||||||||| |||  ||||||| ||||||||||||||||||  ||||||| |||||||||||||||||||| |||||    
T  35783779 tttgtaatattccatttcaatcaatacaaagagtttgttagtttttcctccttctttccatggatgccatgtttcttaaca 35783859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 31482254 - 31482196
Alignment:
Q  1 caccaagttgaggaagcatagttcttagacaagaccacgatgaaaatctgagaggcttc 59  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||    
T  31482254 caccaagttgaggaagcataactcttagacaagaccacgatgaaaatctgagagacttc 31482196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 151 - 231
Target Start/End: Original strand, 5444778 - 5444859
Alignment:
Q  151 tttgtaatattcctttttcatcaatagaaagagtttgttag-ttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||||||||||| |||  ||||||| |||||||||||||| ||||| ||||||| |||||| |||||||||||||||||||    
T  5444778 tttgtaatattccatttcaatcaatacaaagagtttgttagtttttccctccttctttccatagatgccatgtttcctaaca 5444859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 233
Target Start/End: Complemental strand, 20880209 - 20880036
Alignment:
Q  60 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagaga-acttttctcat-ttttgtaa 157  Q
    |||||||||| ||||||| ||    |||||| |||||||| ||||||||||||||||||||||||||||||||| | || ||  | |||||  |||||||    
T  20880209 tattagagatgtagattaataattcattagttctagtagacagtagtataaataacttgtaaccaccccattagtgggatac--tgctcatcatttgtaa 20880112  T
Q  158 tattcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaacaca 233  Q
      |||  || |||| |||| |||||||| |||| ||||||||| ||||||||||||||  |||| ||| |||||||    
T  20880111 ctttctattctcattaatacaaagagttagttacttttctctcattccttccatggatatcatgcttcataacaca 20880036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 27510565 - 27510482
Alignment:
Q  151 tttgtaatattc-ctttt-tcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaacac 232  Q
    |||||||||||| ||||| ||||||||||||||| | | ||||||||||||| |||||||  |||||  |||||||||||||||    
T  27510565 tttgtaatattcacttttatcatcaatagaaagattctcttagttttctctcattccttcattggatatcatgtttcctaacac 27510482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 20879962 - 20880035
Alignment:
Q  60 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattag 133  Q
    ||||||| |||||||||||| | | |||||  |||||||| | ||||||||||||||| |||||||| ||||||    
T  20879962 tattagaaatatagattagtggtacattagctctagtagacattagtataaataacttataaccacctcattag 20880035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 4167654 - 4167574
Alignment:
Q  151 tttgtaatattcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||||||||||  |||||||| ||| |||||||| || | ||||||||| ||||||| || ||||||| ||||| |||||    
T  4167654 tttgtaatattctattttcatcgataaaaagagttagtaacttttctctcattccttctattgatgccacgtttcgtaaca 4167574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 31162335 - 31162383
Alignment:
Q  6 agttgaggaagcatagttcttagacaagaccacgatgaaaatctgagag 54  Q
    |||||||||||||||||||||||| || ||||| ||||||||| |||||    
T  31162335 agttgaggaagcatagttcttagaaaataccacaatgaaaatcagagag 31162383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 5440902 - 5440964
Alignment:
Q  170 atcaatagaaagagtttgttag-ttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||||| |||||||||||||| |||| |||||||| ||  || |||||||||||||||||||    
T  5440902 atcaatacaaagagtttgttagtttttttctccttctttttatagatgccatgtttcctaaca 5440964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 31529210 - 31529268
Alignment:
Q  1 caccaagttgaggaagcatagttcttagacaagaccacgatgaaaatctgagaggcttc 59  Q
    ||||||||||||||||||||||| || || ||||| || |||||| || ||||||||||    
T  31529210 caccaagttgaggaagcatagttgtttgagaagacaacaatgaaagtccgagaggcttc 31529268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 31476418 - 31476366
Alignment:
Q  1 caccaagttgaggaagcatagttcttagacaagaccacgatgaaaatctgaga 53  Q
    |||||||||||| |||| |||||||| ||||||||||| | ||||| ||||||    
T  31476418 caccaagttgagaaagcgtagttctttgacaagaccacaacgaaaacctgaga 31476366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 3e-71; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 59 - 231
Target Start/End: Complemental strand, 7275315 - 7275144
Alignment:
Q  59 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaat 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||    
T  7275315 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggtacttttctca-ttttgtaat 7275217  T
Q  159 attcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||| || ||||||| |||||||||||||||    
T  7275216 attccattttcatcaatagaaagagtttcttagttttctctccttcttttcatggataccatgtttcctaaca 7275144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 7277919 - 7277749
Alignment:
Q  60 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaata 159  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||    
T  7277919 tattagagatatagattattagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggtacttttctca-ttttgtaata 7277821  T
Q  160 ttcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    |||| |||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||    
T  7277820 ttccattttcatcaatagaaagagtttcttagttttctctccttctttccatggataccatgtttcctaaca 7277749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 61 - 231
Target Start/End: Original strand, 13856639 - 13856809
Alignment:
Q  61 attagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaatat 160  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    |||| |   |||||| |||    
T  13856639 attagagatatagattagtggcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggttactttcactcatttgtagtat 13856738  T
Q  161 tcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||| |||  ||||||| |||| ||| |||||||||||||||||| ||||||||||| |||||||| |||||    
T  13856739 tccatttctatcaatacaaagtgttcgttagttttctctccttctttccatggatgtcatgtttcataaca 13856809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 82 - 224
Target Start/End: Complemental strand, 3567639 - 3567495
Alignment:
Q  82 catattagtcctagtagagagtagtataaataacttgtaaccaccccattagagaga-acttttctcatt--tttgtaatattcctttttcatcaataga 178  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||| ||||||| || |||||| ||| |  ||||||||||||| |||||||||||| |    
T  3567639 catattagtcctagcagagagtagtataaataacctgtaaccaccctattagagggatactttt-tcactcatttgtaatattccattttcatcaataca 3567541  T
Q  179 aagagtttgttagttttctctccttccttccatggatgccatgttt 224  Q
    ||||||||||||| ||||| |||||||||||| ||||| |||||||    
T  3567540 aagagtttgttagatttctttccttccttccacggatgtcatgttt 3567495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 29864555 - 29864498
Alignment:
Q  167 ttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgttt 224  Q
    |||||||||||||||||||||||| ||||||||  || |||| |||||||||||||||    
T  29864555 ttcatcaatagaaagagtttgttaattttctctattttcttctatggatgccatgttt 29864498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 5690859 - 5690896
Alignment:
Q  194 ttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  5690859 ttctctcattccttccatggatgccatgtttcataaca 5690896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 231
Target Start/End: Original strand, 12464815 - 12464844
Alignment:
Q  202 ttccttccatggatgccatgtttcctaaca 231  Q
    ||||||||||||||||||||||||||||||    
T  12464815 ttccttccatggatgccatgtttcctaaca 12464844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 58 - 231
Target Start/End: Original strand, 31180184 - 31180355
Alignment:
Q  58 tctattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaa 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| ||||||||    
T  31180184 tctattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttctaaccaccccattagag-ggacttttctca-ttttgtaa 31180281  T
Q  158 tattcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    |||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  31180282 tattccatttccatcaatagaaagagtttcttagttttctctccttccttccatggatgccatgcttcctaaca 31180355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 59 - 231
Target Start/End: Original strand, 24039425 - 24039596
Alignment:
Q  59 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaat 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| | |||||||    
T  24039425 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccacctcattagagggcacttttctca-tattgtaat 24039523  T
Q  159 attcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||| |||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||| ||||||    
T  24039524 attccattttcatcaatagaaaaagtttcttagttttctctcattccttccatggatgccatgttttctaaca 24039596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 60 - 231
Target Start/End: Original strand, 24038231 - 24038401
Alignment:
Q  60 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaata 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||| | ||||||||    
T  24038231 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccactccattagagggcacttttctca-tattgtaata 24038329  T
Q  160 ttcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    |||| |||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||| ||||||    
T  24038330 ttccattttcatcaatagaaaaagtttcttagttttctctcattccttccatggatgccatgttttctaaca 24038401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 59 - 231
Target Start/End: Complemental strand, 31269633 - 31269463
Alignment:
Q  59 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaat 158  Q
    |||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||| |||||    
T  31269633 ctattagatatatagat-agtagcatattagtcctagtagagagtaatataaataacttgtaaccaccccattagagggtacttttctcatttt-gtaat 31269536  T
Q  159 attcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||  ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31269535 attcaatttccatcaatagaaagagtttcttagttttctctccttccttccatggatgccatgtttcctaaca 31269463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 242 - 530
Target Start/End: Original strand, 32746559 - 32746842
Alignment:
Q  242 aacttacagaaattgcagaaggcataccgacaacgggatcttcaaagaatttatttgctagagccaaggcaaggagactactttgcattcctgcag-ttg 340  Q
    ||||||||||||||| ||||||||| || ||||| | |||||||| ||||||||| || |||| || ||||||||| ||| || ||||| ||||||   |    
T  32746559 aacttacagaaattgtagaaggcattccaacaactgaatcttcaacgaatttattagcaagagtcagggcaaggaggctaattagcatttctgcagccgg 32746658  T
Q  341 gacaaatgaatttatttaacaaagttacatatgctactacaaacatctgatggatgaacaatggagaaattaaagttgtacctgtctcaaaggaaattgt 440  Q
    |||||||| | | |||||||| ||| ||||||||||||||||||||||||||||| || |||||| |    ||||||||||||||| || ||||||||||    
T  32746659 gacaaatg-actaatttaacacagtaacatatgctactacaaacatctgatggat-aaaaatggaaa----aaagttgtacctgtcgcagaggaaattgt 32746752  T
Q  441 tctctgcagtggcttcacatcaggtgagtcacggaagatgaatccactaagaatataaccagaaacgaaagatgacaaatgaaaagcaac 530  Q
    |||||| ||||| |||||||||||  | || || |||| |||||||  || ||||||| |||  || ||| |||||||||||||||||||    
T  32746753 tctctgtagtggattcacatcaggataatcccgaaagacgaatccagcaacaatataaacagctacaaaatatgacaaatgaaaagcaac 32746842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 36402832 - 36402682
Alignment:
Q  82 catattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaatattcctttttcatcaatagaaag 181  Q
    |||||||||| |||||||   |||||||||||  |||||||||||||||||| | | |  |||| |   ||||||||||||  ||| |||||||| ||||    
T  36402832 catattagtcttagtagattttagtataaatagtttgtaaccaccccattagtgggtaactttcactcatttgtaatattctatttccatcaatacaaag 36402733  T
Q  182 agtttgttagttttctctccttccttccatggatgccatgtttcctaacaca 233  Q
    ||||||| || |||||||||||| ||||||||||  |||||||| |||||||    
T  36402732 agtttgt-agatttctctccttcattccatggatatcatgtttcataacaca 36402682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 132; Significance: 3e-68; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 111714 - 111544
Alignment:
Q  60 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaata 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  111714 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagggaacttttctca-ttttgtaata 111616  T
Q  160 ttcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    |||| |||  ||||||| ||||||||| |||  |||||||||||||||||||||||||||||||||||||||    
T  111615 ttccatttaaatcaataaaaagagtttattaaatttctctccttccttccatggatgccatgtttcctaaca 111544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 6e-66; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 30689804 - 30689634
Alignment:
Q  60 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaata 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| ||||||||||    
T  30689804 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataatttgtaaccaccccattagagggtacttttctca-ttttgtaata 30689706  T
Q  160 ttcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    || |  ||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||    
T  30689705 tttcactttcatcaatagaaagagtttcttagttttctctcattcctttcatggatgccatgtttcctaaca 30689634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 8655991 - 8655827
Alignment:
Q  60 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaata 159  Q
    |||||||||||||||||| ||||||||||||      ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  8655991 tattagagatatagattaatagcatattagt------agagagtagtataaataacttgtaaccaccccattagagggaacttttctcatttt-gtaata 8655899  T
Q  160 ttcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    |||| ||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  8655898 ttccatttccatcaatagaaagagtttcttagttttctctccttccttctatggatgccatgtttcctaaca 8655827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 6825597 - 6825508
Alignment:
Q  141 ttttctcatttttgtaatattcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    |||||||||||| |||||||||| |||  ||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  6825597 ttttctcatttt-gtaatattccatttctatcaatacaaagagtttgttagatttatctccttccttccatggatgccatgtttcctaaca 6825508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 151 - 231
Target Start/End: Original strand, 24249778 - 24249858
Alignment:
Q  151 tttgtaatattcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||||||||||| ||| ||| |||| ||||||||||||||||||||||| ||| || ||| |||||||||||||||||||    
T  24249778 tttgtaatattccatttccattaatacaaagagtttgttagttttctctcattctttacattgatgccatgtttcctaaca 24249858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 6823124 - 6823035
Alignment:
Q  141 ttttctcatttttgtaatattcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    |||||||||||| |||||||||| |||  ||||||| |||||||||||||| ||| |||||||||||||||| ||| ||||||| ||||||    
T  6823124 ttttctcatttt-gtaatattccatttctatcaatacaaagagtttgttagatttatctccttccttccatgaatgtcatgttttctaaca 6823035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 12781427 - 12781485
Alignment:
Q  1 caccaagttgaggaagcatagttcttagacaagaccacgatgaaaatctgagaggcttc 59  Q
    ||||||||||||||||||||||||||||| || || || ||| ||| ||||||||||||    
T  12781427 caccaagttgaggaagcatagttcttagagaatacaacaatgtaaacctgagaggcttc 12781485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 4555749 - 4555810
Alignment:
Q  170 atcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||||| |||||||||||||| |||  |||||||  || ||||||||||||||||||||||    
T  4555749 atcaatacaaagagtttgttagattttgctccttcgatctatggatgccatgtttcctaaca 4555810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 1136309 - 1136235
Alignment:
Q  151 tttgtaatattcctttttcatcaatagaaagag-tttgttagttttctctccttccttccatggatgccatgttt 224  Q
    ||||||||||||  ||| |||||||| |||||| |||| ||  |||||||| ||||||||||||||| |||||||    
T  1136309 tttgtaatattcaatttccatcaatataaagagatttgctatatttctctcattccttccatggatgtcatgttt 1136235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 12785617 - 12785675
Alignment:
Q  1 caccaagttgaggaagcatagttcttagacaagaccacgatgaaaatctgagaggcttc 59  Q
    ||||||||||| ||||||||||||||||| || || || ||| ||| ||||||||||||    
T  12785617 caccaagttgaagaagcatagttcttagagaatacaacaatgtaaagctgagaggcttc 12785675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 31792317 - 31792354
Alignment:
Q  76 tagtagcatattagtcctagtagagagtagtataaata 113  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  31792317 tagtagcgtattagtcctagtagatagtagtataaata 31792354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 60 - 197
Target Start/End: Original strand, 4583 - 4719
Alignment:
Q  60 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaata 159  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| ||  ||||||||||    
T  4583 tattagatatatagattagtagcatattagtcctagtagagagtagtataaataatttgtaaccaccctattagagggaactttt-tccattttgtaata 4681  T
Q  160 ttcctttttcatcaatagaaagagtttgttagttttct 197  Q
    || | |||||||||||||||||||||| ||||||||||    
T  4682 tttcattttcatcaatagaaagagtttcttagttttct 4719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 5e-42; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 10018948 - 10018777
Alignment:
Q  60 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaata 159  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||  ||||||  |    || | |   |||||||||    
T  10018948 tattagagatatagattagtggcatattagttctagtagagagtagtataaataacttgtaatcaccttattagatggttacttccactcatttgtaata 10018849  T
Q  160 ttcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    || | ||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10018848 tttcatttccatcaatacaaagagtttgttagttttctctccttctttccatggatgccatgtttcctaaca 10018777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 10256262 - 10256091
Alignment:
Q  60 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaata 159  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||  ||||||  |    || | |   |||||||||    
T  10256262 tattagagatatagattagtggcatattagttctagtagagagtagtataaataacttgtaaccaccttattagatggttacttccactcatttgtaata 10256163  T
Q  160 ttcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    || | ||| |||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10256162 tttcatttccatcaatacaaaaagtttgttagttttctctccttctttccatggatgccatgtttcctaaca 10256091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 10180145 - 10179974
Alignment:
Q  60 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaata 159  Q
    |||||||||||||||||||| ||||||||||  |||||||||||| |||||||||||||||| || || ||||||| |    |||| |   |||||||||    
T  10180145 tattagagatatagattagtggcatattagttgtagtagagagtaatataaataacttgtaatcatcctattagagggttactttcactcatttgtaata 10180046  T
Q  160 ttcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    || | ||| |||||||| ||||||||||||||||||||||||||| || |||||||| ||||||||||||||    
T  10180045 tttcatttccatcaatacaaagagtttgttagttttctctccttcttttcatggatgtcatgtttcctaaca 10179974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 94 - 231
Target Start/End: Complemental strand, 10123454 - 10123317
Alignment:
Q  94 agtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaatattcctttttcatcaatagaaagagtttgttagtt 193  Q
    |||||| ||||||||||||||||||||||||||  ||||||| |    || | |   ||||||||||| | ||| |||||||| ||||||||||||||||    
T  10123454 agtagaaagtagtataaataacttgtaaccaccttattagagggttacttccactcatttgtaatatttcatttccatcaatacaaagagtttgttagtt 10123355  T
Q  194 ttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||||||||| || |||||||||||||||||||||||    
T  10123354 ttctctccttcttttcatggatgccatgtttcctaaca 10123317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 782918 - 782838
Alignment:
Q  151 tttgtaatattcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||||||||||| |||  ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  782918 tttgtaatattccatttctatcaatacaaagagtttgttagatttctctccttccttccatggatgtcatgtttcctaaca 782838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 68 - 231
Target Start/End: Complemental strand, 8504365 - 8504202
Alignment:
Q  68 atatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagag-aacttttctcatttttgtaatattc-ctt 165  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||  ||||||| |  | ||  ||||  ||||| |||||| |||    
T  8504365 atatagattagtggcatattagtcctagtaaagagtagtataaataacttgtaacaaccaaattagagggtcaattcactca--tttgtgatattcactt 8504268  T
Q  166 tttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    | ||||||||||||||  | | | ||||||||||| ||||||||||||||  |||| |||||||||    
T  8504267 tatcatcaatagaaagcttatttgagttttctctcattccttccatggatttcatgattcctaaca 8504202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 19954622 - 19954451
Alignment:
Q  60 tattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagagaacttttctcatttttgtaata 159  Q
    |||| ||||||||| |||||  |||| ||||| | |||||  ||||||||||||  ||||||| ||| |||||| | | |  |||| |   |||||| ||    
T  19954622 tattggagatatagtttagtttcataatagtctttgtagattgtagtataaatagtttgtaacaacctcattagtgggtaactttcactcatttgtatta 19954523  T
Q  160 ttcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    |||| ||| |||||||| |||||| ||||||| |||||||||||||||||||||||| |||||||| |||||    
T  19954522 ttccatttccatcaatacaaagagattgttagatttctctccttccttccatggatgtcatgtttcataaca 19954451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 10514429 - 10514351
Alignment:
Q  153 tgtaatattcc-tttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||||||||| |||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||    
T  10514429 tgtaatattccatttttcat-aatacaaagagtttattagttttctctccttctttccatggatgccatgattcctaaca 10514351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 10661836 - 10661756
Alignment:
Q  151 tttgtaatattcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||||||||||| |||||   | || ||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||    
T  10661836 tttgtaatattccattttccatactacaaagagtttgttagttttctctcattctttccatggatgtcatgtttcctaaca 10661756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 10511106 - 10511027
Alignment:
Q  151 tttgtaatattcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||||||||||| |||||   |||| ||||||||||||||||||||||| ||| |||||| |||| ||||||||||||||    
T  10511106 tttgtaatattccattttccataatacaaagagtttgttagttttctctcattctttccatagatg-catgtttcctaaca 10511027  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 10613426 - 10613345
Alignment:
Q  151 tttgtaatattccttttt-catcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaacac 232  Q
    ||||||||||||| |||| ||| |||| ||||||||||||||||||||||| ||| ||| ||||||| |||| |||| |||||    
T  10613426 tttgtaatattccattttgcat-aatacaaagagtttgttagttttctctcattctttctatggatgtcatgattcccaacac 10613345  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 233
Target Start/End: Original strand, 17743104 - 17743143
Alignment:
Q  194 ttctctccttccttccatggatgccatgtttcctaacaca 233  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  17743104 ttctctcattcctttcatggatgccatgtttcctaacaca 17743143  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 233
Target Start/End: Original strand, 19044424 - 19044463
Alignment:
Q  194 ttctctccttccttccatggatgccatgtttcctaacaca 233  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  19044424 ttctctcattcctttcatggatgccatgtttcctaacaca 19044463  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 10744728 - 10744802
Alignment:
Q  60 tattagagatata-gattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattag 133  Q
    ||||||||||||| ||||||| | ||||||||| || || | ||||||||||||| |||| ||||||| ||||||    
T  10744728 tattagagatatatgattagtggtatattagtcttaatatatagtagtataaatagcttgaaaccacctcattag 10744802  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 231
Target Start/End: Complemental strand, 27825774 - 27825693
Alignment:
Q  151 tttgtaatattc-ctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    |||||||||||| |||| ||||||||| ||||| | | | ||||||||||| |||||||  |||||  ||||||||||||||    
T  27825774 tttgtaatattcactttatcatcaatacaaagattatttgagttttctctcattccttcattggatatcatgtttcctaaca 27825693  T

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Target: scaffold0655 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 59 - 230
Target Start/End: Original strand, 611 - 782
Alignment:
Q  59 ctattagagatatagattagtagcatattagtcctagtagagagtagtataaataacttgtaaccaccccattagagag-aacttttctcatttttgtaa 157  Q
    |||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |  ||||  ||||||||  |||    
T  611 ctattagagatatagattagtgccatattaatcctagtagagagtagtataaataacttgtatccaccccattagagggtgacttcactcatttt--taa 708  T
Q  158 tattcctttttcatcaatagaaagag-tttgttagttttctctccttccttccatggatgccatgtttcctaac 230  Q
    |||||  ||| |||||||| |||||| |||  || ||||||||| ||||||| | |||||||||||||||||||    
T  709 tattcaatttccatcaatacaaagagctttactacttttctctcattccttcgacggatgccatgtttcctaac 782  T

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Target: scaffold0001 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 141 - 233
Target Start/End: Complemental strand, 144750 - 144659
Alignment:
Q  141 ttttctcatttttgtaatattcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaacaca 233  Q
    |||||||||||| |||||||||| |||  ||||||| |||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||    
T  144750 ttttctcatttt-gtaatattccatttctatcaatataaagagtttgttagatttatctccttccttccatagatgccatgtttcctaacaca 144659  T

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Target: scaffold0001; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 146809 - 146720
Alignment:
Q  141 ttttctcatttttgtaatattcctttttcatcaatagaaagagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    |||||||||||| |||||||||| |||  ||||||| |||||||||||||| ||| |||||||||||| || |||||||||||||||||||    
T  146809 ttttctcatttt-gtaatattccatttctatcaatataaagagtttgttagatttatctccttccttctatagatgccatgtttcctaaca 146720  T

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Target: scaffold0959 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 458 - 408
Alignment:
Q  181 gagtttgttagttttctctccttccttccatggatgccatgtttcctaaca 231  Q
    ||||||||||| |||||||| ||||||||||||||||| ||||||||||||    
T  458 gagtttgttagatttctctcattccttccatggatgccttgtttcctaaca 408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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