View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2137_low_34 (Length: 216)
Name: NF2137_low_34
Description: NF2137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2137_low_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 71; Significance: 2e-32; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 41760799 - 41760725
Alignment:
| Q |
16 |
attctaagatcttctttcatctttctaatgaaatcttcaaattttttgtttaactcttcagtacttagcacacaa |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41760799 |
attctaagatcttctttcatctttctaatgaaatcttcaaattttttgtttaactcttctgtacttagcacacaa |
41760725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 41795588 - 41795516
Alignment:
| Q |
16 |
attctaagatcttctttcatctttctaatgaaatcttcaaattttttgtttaactcttcagtacttagcacac |
88 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||| |
|
|
| T |
41795588 |
attcttagatcttctttcatctttctaatgaaatcttcgaattttttgtttaactcttctgtacttaacacac |
41795516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 194
Target Start/End: Complemental strand, 41760656 - 41760621
Alignment:
| Q |
159 |
aattagaatgtaatcaatttccgacaatttatctcc |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
41760656 |
aattagaatgtaatcaatttccgacaatttatctcc |
41760621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 202
Target Start/End: Complemental strand, 41795457 - 41795414
Alignment:
| Q |
159 |
aattagaatgtaatcaatttccgacaatttatctccatcttcat |
202 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
41795457 |
aattagaatgtaatcaatttccgaccctttatctccgtcttcat |
41795414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 23507455 - 23507400
Alignment:
| Q |
31 |
ttcatctttctaatgaaatcttcaaattttttgtttaactcttcagtacttagcac |
86 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
23507455 |
ttcatctttttaatgaagtcatcaaattttttgttcaactcctcagtgcttagcac |
23507400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University