View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2137_low_4 (Length: 534)
Name: NF2137_low_4
Description: NF2137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2137_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 21 - 391
Target Start/End: Complemental strand, 25543089 - 25542732
Alignment:
| Q |
21 |
gttgggccagtgccttctctttctcctttatctagttttcactcaaaataatcatgtcaagttagtttcaattaagatttataccaaactactgtctaca |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||| | |||||||||| ||| |||||||||||||||||| |||||||| ||||||| |
|
|
| T |
25543089 |
gttgggccagtgccttctctttctcctttatctaattttcattcaaagtgatcatgtcaaattaatttcaattaagatttatagcaaactacggtctaca |
25542990 |
T |
|
| Q |
121 |
aagagctat---taaccnnnnnnnnnnnnnnnnntacattagtataacctttattgtaagcaatttgnnnnnnncttggagggccttatcctgcattgaa |
217 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25542989 |
aagagctataattaaccaaaaaaagaaa------tacattagtataacctttgttgtaagcaatttgtttttttcttggagggccttatcctgcattgaa |
25542896 |
T |
|
| Q |
218 |
taaaaaattaattggtgatggacaataacaaattttattgtgataaatagatgatatagtgaatgttttaagggtttatataacaaaagtataaatttga |
317 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25542895 |
taaaaaattaattggtgatagacaataacaaattttattgtg----atagatgatctagtgaatgttttaagggtttatataacaaaagtataaatttga |
25542800 |
T |
|
| Q |
318 |
atttgaattttaaattatcctgacactaatactatcagacataacaaatagggtgctggacataggcggaacac |
391 |
Q |
| |
|
|||||||||| |||||| | |||| |||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
25542799 |
atttgaatttaaaattaccatgac------actatcagacataacaaatagggtgccgtacataggcggaacac |
25542732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 430 - 500
Target Start/End: Complemental strand, 25542731 - 25542661
Alignment:
| Q |
430 |
gcgcaaacagcagaccagaaaacacaaacaggcctcacaaacagaaaagacttccctcccagatcagatag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||| |
|
|
| T |
25542731 |
gcgcaaacagcagaccagaaaacacaaacaggcctcacaaacagaaaagacttcccacccaggttagatag |
25542661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 448 - 501
Target Start/End: Complemental strand, 3595040 - 3594987
Alignment:
| Q |
448 |
aaaacacaaacaggcctcacaaacagaaaagacttccctcccagatcagatagc |
501 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3595040 |
aaaacacaaacgggcctcacaaacagaaaagacttccctcccagaccagatagc |
3594987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 444
Target Start/End: Complemental strand, 3595123 - 3595057
Alignment:
| Q |
379 |
ataggcggaacaccccaaccaaacaaccaccgacaaccagaaaaaa-ggggggcgcaaacagcagac |
444 |
Q |
| |
|
|||||||| |||||||||| | | ||||||| | |||||||||||| ||||||| |||||||||||| |
|
|
| T |
3595123 |
ataggcggcacaccccaactataaaaccaccaaaaaccagaaaaaatggggggcacaaacagcagac |
3595057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 379 - 486
Target Start/End: Complemental strand, 32017448 - 32017340
Alignment:
| Q |
379 |
ataggcggaacaccccaaccaaacaaccaccgacaaccagaaaaaagggg-ggcgcaaacagcagaccagaaaacacaaacaggcctcacaaacagaaaa |
477 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||| | |||||||||||||||| || ||||||||||||||||||| || ||| ||||||||||||||| ||| |
|
|
| T |
32017448 |
ataggcggaacaccctaacaaaaaaaccaccaaaaaccagaaaaaaggggaggtgcaaacagcagaccagaaagcataaaaaggcctcacaaacagcaaa |
32017349 |
T |
|
| Q |
478 |
gacttccct |
486 |
Q |
| |
|
||| ||||| |
|
|
| T |
32017348 |
gacctccct |
32017340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 452
Target Start/End: Complemental strand, 5179699 - 5179609
Alignment:
| Q |
362 |
caaatagggtgctggacataggcggaacaccccaaccaaacaaccaccgacaaccagaaaaaaggggggcgcaaacagcagaccagaaaac |
452 |
Q |
| |
|
|||| ||||||| | | ||||||||||||||||||||| | ||||| | | ||||| ||| || ||||||||||| | ||||||||||||| |
|
|
| T |
5179699 |
caaacagggtgccgtatataggcggaacaccccaaccataaaaccaacaaaaaccataaacaatgggggcgcaaatatcagaccagaaaac |
5179609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 429 - 486
Target Start/End: Original strand, 37604714 - 37604771
Alignment:
| Q |
429 |
ggcgcaaacagcagaccagaaaacacaaacaggcctcacaaacagaaaagacttccct |
486 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| | |||| ||||| |
|
|
| T |
37604714 |
ggcgcaaacagcagaccagaaatcacaaacaggcctcacaaacagcacagacctccct |
37604771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University