View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2137_low_6 (Length: 478)
Name: NF2137_low_6
Description: NF2137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2137_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 26955087 - 26954636
Alignment:
| Q |
19 |
tgtggtacactgaattgtgagtaagatagagagcactcaaattgtcccaaagaatagagaatgttgaggaagagagacccaattcagtcagaagagagtt |
118 |
Q |
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| T |
26955087 |
tgtggtacactgaattgtgagtaagatagagagcactcaaattgtcccaaagaatagagaatgttgaggaagagagacccaattcattcagaagagagtt |
26954988 |
T |
|
| Q |
119 |
gatccaggatgcaataatggctaatgctttgtacttagccttggtggatgaccttgctactgctctt-----cgatgatttccacaagatgaggttggaa |
213 |
Q |
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| T |
26954987 |
gatccaggatgcaataatggctaatgctttgtacttagccttggtggatgaccttgctactgctctttgcttcgatgatttccacaagatgaggttggaa |
26954888 |
T |
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| Q |
214 |
ctctagtagacaatgtgagcagatgtgtagtcatctttattatcagtccaatcagtatccttatatgcaatgagtgtagaagaattctgtttccgaagaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26954887 |
ctctagtagacaatgtgagcagatgtgtagtcatctttattatcagtccaatcagtatccttatatgcaatgagtgtagaagaattctgtttccgaagaa |
26954788 |
T |
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| Q |
314 |
aaaggccatgaaaattgtacctttgaggcggcgcagaatcctctttagaggagtcaaatgagtggtagtgaatctttgcacgaactaagaaagattatat |
413 |
Q |
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|||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26954787 |
aaaggccatgaaaattgtacctctgatgcggtgcagaatcctctttagaggagtcaaatgagtggtagtggatctttgcacgaactaagaaagattatat |
26954688 |
T |
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| Q |
414 |
taacagtaaatgcaatgtcaggtcatgtcatggataagtattgagactgtct |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26954687 |
taacagtaaatgcaatgtcaggtcatgtcatggataagtattgacactgtct |
26954636 |
T |
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