View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2137_low_7 (Length: 476)
Name: NF2137_low_7
Description: NF2137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2137_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 26 - 359
Target Start/End: Original strand, 17191846 - 17192179
Alignment:
| Q |
26 |
tcctcattatgattagataactcttccacacttttaaccatttcttcctccgataaaaacgcatcctcgcctaaattgcatccccactcctccaccaatt |
125 |
Q |
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| T |
17191846 |
tcctcattatgattagataacacttccacacttggaaccatttcttcctccgataaaaacgcatcctcgcctaaattacaaccccattcctccaccaatt |
17191945 |
T |
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| Q |
126 |
taaccgagtgtacacgaccatctatcacaacctcagatagtaaattaaccacctccaacgaagttgttgaaacaagaacacgagcaaagtctaacctcgc |
225 |
Q |
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| T |
17191946 |
taaccgagtgtacacgaccatctatcacaacctcagatagtgaattaaccacctccaacgaagttgttgaaacaagaacacgagcaaagtctaacctcac |
17192045 |
T |
|
| Q |
226 |
cttatcgaccgtacaatcatccgctcgaatgaatctaccaaactgtgacacacagatcttgaaaaacatttcgttccaagcatgtaaaggagtaccatat |
325 |
Q |
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| T |
17192046 |
cttatcgaccgtacaatcatccgctcgaatgaatctaccacactgtgaaacacaaatcttgaaaaacatttcattccaagcatgtaaaggagtaccacaa |
17192145 |
T |
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| Q |
326 |
atccgcaaacaaggacctcgttcaaaaattgcat |
359 |
Q |
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| T |
17192146 |
atccacaaccaagcaccacgttcaaaaattgcat |
17192179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 373 - 456
Target Start/End: Complemental strand, 17236383 - 17236301
Alignment:
| Q |
373 |
cacgcaatatttcatgaatggttttcaaattcaaagaggaaacacccattcaagtattcgcaccaagaaaagatacccattcca |
456 |
Q |
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| T |
17236383 |
cacgcaatattttatgaatggttttcaaattcaaagaggaa-cacccattcaagtattcgcaccaagaaaagatagccattcca |
17236301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 330
Target Start/End: Original strand, 16482340 - 16482476
Alignment:
| Q |
194 |
gaaacaagaacacgagcaaagtctaacctcgccttatcgaccgtacaatcatccgctcgaatgaatctaccaaactgtgacacacagatcttgaaaaaca |
293 |
Q |
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|||| ||||||||||||| |||| |||| | || |||| ||||||| |||||| |||||| ||||| ||| ||| ||||||||| | | ||||||| |
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| T |
16482340 |
gaaataagaacacgagcatagtccaaccgccccctatcctccgtacacccatccgatcgaataaatcttccacactttgacacacataattgaaaaaaca |
16482439 |
T |
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| Q |
294 |
tttcgttccaagcatgtaaaggagtaccatatatccg |
330 |
Q |
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| T |
16482440 |
aattgttccaagcatgcataggagtaccataaatccg |
16482476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 330
Target Start/End: Complemental strand, 18485028 - 18484892
Alignment:
| Q |
194 |
gaaacaagaacacgagcaaagtctaacctcgccttatcgaccgtacaatcatccgctcgaatgaatctaccaaactgtgacacacagatcttgaaaaaca |
293 |
Q |
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| T |
18485028 |
gaaataagaacgcgagcatagtccaaccgccccatatcctccgtacatccatccgatcgaataaatcttccacactttgacacacataattgaaaaaaca |
18484929 |
T |
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| Q |
294 |
tttcgttccaagcatgtaaaggagtaccatatatccg |
330 |
Q |
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| T |
18484928 |
aattgttccaagcatgcataggagtaccataaatccg |
18484892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 330
Target Start/End: Complemental strand, 21820570 - 21820434
Alignment:
| Q |
194 |
gaaacaagaacacgagcaaagtctaacctcgccttatcgaccgtacaatcatccgctcgaatgaatctaccaaactgtgacacacagatcttgaaaaaca |
293 |
Q |
| |
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|||| ||||||||||||| |||| |||| | || |||| ||||||| |||||| |||||| ||||| ||| ||| ||||||||| | | ||||||| |
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| T |
21820570 |
gaaataagaacacgagcatagtccaaccgccccctatcctccgtacacccatccgatcgaataaatcttccacactttgacacacataattgaaaaaaca |
21820471 |
T |
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| Q |
294 |
tttcgttccaagcatgtaaaggagtaccatatatccg |
330 |
Q |
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| T |
21820470 |
aattgttccaagcatgcataggagtaccataaatccg |
21820434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 236
Target Start/End: Original strand, 32219867 - 32220036
Alignment:
| Q |
67 |
ttcttcctccgataaaaacgcatcctcgcctaaattgcatccccactcctccaccaatttaaccgagtgtacacgaccatctatcacaacctcagatagt |
166 |
Q |
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|||||| ||||||||||| |||||||| |||||||| || |||| ||||||||||| || | | | | || |||||| || ||||| ||| | ||| |
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| T |
32219867 |
ttcttcttccgataaaaatgcatcctcccctaaattacaatcccattcctccaccaactttaacaaataattacaaccatcaataacaacttca-aaagt |
32219965 |
T |
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| Q |
167 |
a-aattaaccacctccaacgaagttgttgaaacaagaacacgagcaaagtctaacctcgccttatcgaccg |
236 |
Q |
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| T |
32219966 |
ataattaacaacctccaaaaaagttgtcgaaataagaacacgagcaaaatccaatctcgccctatccaccg |
32220036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 21309245 - 21309189
Alignment:
| Q |
67 |
ttcttcctccgataaaaacgcatcctcgcctaaattgcatccccactcctccaccaa |
123 |
Q |
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|||||| ||||||||||| |||||||| || ||||| || ||||| ||||||||||| |
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| T |
21309245 |
ttcttcttccgataaaaaagcatcctcccccaaattacacccccattcctccaccaa |
21309189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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