View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2137_low_9 (Length: 449)
Name: NF2137_low_9
Description: NF2137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2137_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 448
Target Start/End: Original strand, 29356377 - 29356806
Alignment:
| Q |
19 |
ataactgtgtttatattagcaaatactgttgtatgaactaataatatagtgttggctgcaatatctagttcgatgaattcaatactaattttgattcaga |
118 |
Q |
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| T |
29356377 |
ataactgtgtttatattagcaaatactgttgtatgaactaataatatagtgttggctgcaatatctagttcgatgaattcaatactaattttgattcaga |
29356476 |
T |
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| Q |
119 |
tgaaaaaacaccagaaaaacgtgatgaatttgatgctcgtttagtacataagatgttaactcgttagccttcgatgactgcaccaatcttctttgctata |
218 |
Q |
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| T |
29356477 |
tgaaaaaacaccagaaaaacgtgattaatttgatgctcgtttagtacataagatgttaactcgttagccttcgatgactgcaccaatcttctttgctata |
29356576 |
T |
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| Q |
219 |
ttattggtttggcaacaaagttcgattggatttaagcatatgctacttttcgactagttcacattggttctattattgatattagcttagatttaagtgt |
318 |
Q |
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| T |
29356577 |
ttattggtttggcaacaaagttcgattggatttaagcatatgctacttttcgactagttcacattggttctattattgatattagcttagatttaagcgt |
29356676 |
T |
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| Q |
319 |
caatttgaaaccctatcgtctgagggatctcagcctgtatcggaatgccttaagtgcttgtttgtttatcaagaagctggaaaatttgctatgtgcatga |
418 |
Q |
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| T |
29356677 |
caatttgaaaccctatcgtctgagggatctcagcctgtatcggaatgccttaagtgcttgtttgtttatcaagaagctggaaaatttgctatgtgcatga |
29356776 |
T |
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| Q |
419 |
ttcctgctctatttgcctatgctactcctc |
448 |
Q |
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| T |
29356777 |
ttcctgctctatttgcttatgcaactcctc |
29356806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 388 - 445
Target Start/End: Original strand, 49255499 - 49255556
Alignment:
| Q |
388 |
caagaagctggaaaatttgctatgtgcatgattcctgctctatttgcctatgctactc |
445 |
Q |
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| T |
49255499 |
caagaagctggaaaatttgctatgtgcatgattcctgctctttttgcttatgcaactc |
49255556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 388 - 440
Target Start/End: Original strand, 49268223 - 49268275
Alignment:
| Q |
388 |
caagaagctggaaaatttgctatgtgcatgattcctgctctatttgcctatgc |
440 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||| ||||| |
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| T |
49268223 |
caagaagctggaaaattttccatgtgcatgattcctgctctatttgcttatgc |
49268275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 388 - 440
Target Start/End: Complemental strand, 49274134 - 49274082
Alignment:
| Q |
388 |
caagaagctggaaaatttgctatgtgcatgattcctgctctatttgcctatgc |
440 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||| ||||| |
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| T |
49274134 |
caagaagctgggaaatatgctatgtgcatgattcctgctctatttgcttatgc |
49274082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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