View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21380_high_1 (Length: 469)
Name: NF21380_high_1
Description: NF21380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21380_high_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 469
Target Start/End: Original strand, 34228180 - 34228630
Alignment:
| Q |
19 |
taaaacgcaccggatcaggagggtgacttgaatactaaatattttcatatgtcagcaatgacgaggatcaagaagaagaaggtaactaaattggttaacg |
118 |
Q |
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| T |
34228180 |
taaaacgcaccggatcaggagggtgacttgaatactaaatattttcatatgtcaacaatgatgaggatcaagaagaagaaggtaactaaattggttaacg |
34228279 |
T |
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| Q |
119 |
attgacgcgaggaggttactagccaagaggagttgtgtgatgtagctaagaaatattttgatgagttgttcaggcctaatgatggtgtccacaaacctgt |
218 |
Q |
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| T |
34228280 |
attgacgcgaggaggttactagccaagaggagttgtgtgatgtagccaagaaatattttgatgagttgttcaggcctaatgatggtgtccacaaacctgt |
34228379 |
T |
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| Q |
219 |
cttggaactcattcatagtagagttactttggaatataaccagagtctgatacctattacaaagaaagggcttaagcaagatttatttcaaatgcatcag |
318 |
Q |
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| T |
34228380 |
cttggaactcattcatagtagagttactttggaatataaccagagtctgatacctattacaaagaaagggcttaagcaagatttatttcaaatgcatcag |
34228479 |
T |
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| Q |
319 |
gataagtctcttggtccagacagtttcaatccgacgttctttcttatgattttggtatcttcgcggtgatgatatttttacagccgctacatcatagcta |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
34228480 |
gataagtctcttggtccagacagtttcaatccgacgttctttcttatgtttttggtatctttgcggtgatgatatttttgcagccgctacatcatagcta |
34228579 |
T |
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| Q |
419 |
gatcatggatttttcccaaacaaccttaatgagatgaatatctggcttatt |
469 |
Q |
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| T |
34228580 |
gatcatggatttttcccaaacaaccttaatgagatgaatatctggcttatt |
34228630 |
T |
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