View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21380_high_4 (Length: 302)
Name: NF21380_high_4
Description: NF21380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21380_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 20021076 - 20021371
Alignment:
| Q |
1 |
agaatcagtgtcttttttgatgcatggtttgaggaaataggcagttctgacagtttggttttcaccagatgatagggaaaccatgagttcttgtcgggat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
20021076 |
agaatcagtgtcttttttgatgcatggtttgaggaaataggcagttctgacagtttggttttcaccagatgatagtgaaaccatgagttcttgtctggat |
20021175 |
T |
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| Q |
101 |
tctatgatgttgatgttgatgttttcatccattttcagaaaagtgaatgaaaatgacnnnnnnnnnnntggnnnnnnnagtgaaatgaaagaagaaactt |
200 |
Q |
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| T |
20021176 |
tctatgatgttgatgttgatgttttcatccattttcagaaaagtgaatgaaaatgac-aaaaaaaaaatggtttttttagtgaaatgaaagaaggaactt |
20021274 |
T |
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| Q |
201 |
a-agacttctggcataagggttgggtttagtgtaactcaaccattttacacactttatagtgtacttgggatgacatcacacactcaagtataatct |
296 |
Q |
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| T |
20021275 |
agagacttctggcataagggttgggtttactgtaactcaaccattttacacactttatagtgtacttgggatgacatcacacactcaagtataatct |
20021371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 19967187 - 19967086
Alignment:
| Q |
16 |
tttgatgcatggtttgaggaaataggcagttctgacagtttggttttcaccagatgatagggaaaccatgagttcttgtcgggattctatgatgttgatg |
115 |
Q |
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|||| |||||||||| ||||||||||||||||||| |||||||||||| ||||||| | || |||||||||||||||| | |||||||||||||||| |
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| T |
19967187 |
tttgttgcatggtttaaggaaataggcagttctgaatgtttggttttcatcagatgagggtgagaccatgagttcttgtctagcttctatgatgttgatg |
19967088 |
T |
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| Q |
116 |
tt |
117 |
Q |
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|| |
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| T |
19967087 |
tt |
19967086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 14857020 - 14857134
Alignment:
| Q |
1 |
agaatcagtgtcttttttgatgcatggtttgaggaaataggcagttctgacagtttggttttcaccagatgatagggaaaccatgagttcttgtcgggat |
100 |
Q |
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||||| |||||| | | ||||||||||||| || |||||||| ||| ||||||||||||||||| |||||||| | |||||||||||||||| || | | |
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| T |
14857020 |
agaataagtgtcgtctctgatgcatggtttaagaaaataggcggttttgacagtttggttttcagcagatgatggtgaaaccatgagttcttttctagct |
14857119 |
T |
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| Q |
101 |
tctatgatgttgatg |
115 |
Q |
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|||||||||||||| |
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| T |
14857120 |
cctatgatgttgatg |
14857134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 297
Target Start/End: Original strand, 14857972 - 14858011
Alignment:
| Q |
258 |
agtgtacttgggatgacatcacacactcaagtataatcta |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
14857972 |
agtgtacttgggatgacatcacacactcaagtataatcta |
14858011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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