View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21380_high_9 (Length: 244)
Name: NF21380_high_9
Description: NF21380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21380_high_9 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 20020786 - 20021011
Alignment:
| Q |
19 |
atatcttccaatgtaattgttgattctccccaagggaacacaaaagtattggtcttggaacaccatctatcagcaagttgaagaatcaaatcatcatccc |
118 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20020786 |
atatcttccaatgtgattgttgattctccccaagggaacacaaaagtattggtcttggaacaccatctattagcaagttgaagaatcaaatcatcatccc |
20020885 |
T |
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| Q |
119 |
ttttgattttatatgtagaagctgtgattgcatggtatattccagttttgatccatagaaattcaaactttggtcttaatttgttgacccatttcttcca |
218 |
Q |
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| T |
20020886 |
ttttgatttcataagtagaagctgtgatagcatggtatattccagttttgatccatagaaattcaaactttggtcttaatttgttgacccatttcttcca |
20020985 |
T |
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| Q |
219 |
ttcttcttgtggagctctccacccat |
244 |
Q |
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|||||||||||||||||||||||||| |
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| T |
20020986 |
ttcttcttgtggagctctccacccat |
20021011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 19967492 - 19967267
Alignment:
| Q |
19 |
atatcttccaatgtaattgttgattctccccaagggaacacaaaagtattggtcttggaacaccatctatcagcaagttgaagaatcaaatcatcatccc |
118 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||| |||||| || |
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| T |
19967492 |
atatcttccaatgtgattgttgattctccccaagggaacacaaatgtgttggtcttggaacaccatctatcagcaagttgaaggatcaaagcatcattcc |
19967393 |
T |
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| Q |
119 |
ttttgattttatatgtagaagctgtgattgcatggtatattccagttttgatccatagaaattcaaactttggtcttaatttgttgacccatttcttcca |
218 |
Q |
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| T |
19967392 |
ttttgatttcataagtagaagctgtgatagcatggtatattccagttttgatccataaaaattcaaactttggtcgtaatttgttgacccatttcttcca |
19967293 |
T |
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| Q |
219 |
ttcttcttgtggagctctccacccat |
244 |
Q |
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| T |
19967292 |
ttcatcttgcggccttctccacccat |
19967267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 19962802 - 19962599
Alignment:
| Q |
19 |
atatcttccaatgtaattgttgattctccccaagggaacacaaaagtattggtcttggaacaccatctatcagcaagttgaagaatcaaatcatcatccc |
118 |
Q |
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| T |
19962802 |
atatcttccaatgtaattgttgattctccccaagggaaaacaaaagtattggtcttggaacaccatctattagcaagttgaagaatcaaatcatcatccc |
19962703 |
T |
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| Q |
119 |
ttttgattttatatgtagaagctgtgattgcatggtatattccagttttgatccatagaaattcaaactttggtcttaatttgttgacccatttcttcca |
218 |
Q |
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| T |
19962702 |
ttttgatttcataagtagaagctttgattgcattgtatattccagttttgatccataaagattcaaactttggttgtaattttgtgacccagttgttcca |
19962603 |
T |
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| Q |
219 |
ttct |
222 |
Q |
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|||| |
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| T |
19962602 |
ttct |
19962599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 222
Target Start/End: Original strand, 20027601 - 20027804
Alignment:
| Q |
19 |
atatcttccaatgtaattgttgattctccccaagggaacacaaaagtattggtcttggaacaccatctatcagcaagttgaagaatcaaatcatcatccc |
118 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
20027601 |
atatcttccaatgtgattgttgattctccccaagggaacacaaaggtgttggtcttggaacaccatctattagcaagttgaagcatcaaatcatcatccc |
20027700 |
T |
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| Q |
119 |
ttttgattttatatgtagaagctgtgattgcatggtatattccagttttgatccatagaaattcaaactttggtcttaatttgttgacccatttcttcca |
218 |
Q |
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||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||| |||||| ||||||| || ||||| |
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| T |
20027701 |
ttttgatttcataagtagaagctttgattgcatggtatattccagttttgatccataaagattcaaactttggttgtaattttgtgacccagttgttcca |
20027800 |
T |
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| Q |
219 |
ttct |
222 |
Q |
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|||| |
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| T |
20027801 |
ttct |
20027804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 43 - 166
Target Start/End: Original strand, 14856422 - 14856545
Alignment:
| Q |
43 |
tctccccaagggaacacaaaagtattggtcttggaacaccatctatcagcaagttgaagaatcaaatcatcatcccttttgattttatatgtagaagctg |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| ||| |||||||||| |
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| T |
14856422 |
tctccccaagggaacacaaaagtattggtcttggaacaccatctattagcaagttcaagaataaaatcatcatcccttttgatttcataagtagaagctg |
14856521 |
T |
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| Q |
143 |
tgattgcatggtatattccagttt |
166 |
Q |
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| T |
14856522 |
tgattgcatgatatattccagttt |
14856545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 14856869 - 14856955
Alignment:
| Q |
158 |
ttccagttttgatccatagaaattcaaactttggtcttaatttgttgacccatttcttccattcttcttgtggagctctccacccat |
244 |
Q |
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| T |
14856869 |
ttccaattttgatccataaaaattcaaactttggttgtaattttttgacccatttcttccattcttcttgtggagttctccacccat |
14856955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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