View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21380_low_2 (Length: 401)
Name: NF21380_low_2
Description: NF21380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21380_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 23 - 390
Target Start/End: Complemental strand, 40526269 - 40525903
Alignment:
| Q |
23 |
atgagaataagaagtattggtaaacctcaatgaattaacacacatgcaaatgtttcgattgatcaagctgaacgccataaggaatcgtccattgttcagt |
122 |
Q |
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| T |
40526269 |
atgagaataagaagtattggtaaacctcaatgaattaacacacgtgcaaatgttacgattgatcaagctgaacgccataaggaatcgtccattgttcagt |
40526170 |
T |
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| Q |
123 |
tacaagtgtatttgaagaggtaattttacgcataaaccaaaagatgcgctttcgttgctggaaaagtgtgatccaacgacattgagtttcaggcacccag |
222 |
Q |
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| T |
40526169 |
tacaagtgtatttgaagaggtaattttacgcataaaccaaaagctgcgctttcgttgctggaaaagtgtgatccaactacattgagtttcaggcacccag |
40526070 |
T |
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| Q |
223 |
gaggagaatgaactcaactatgcttttgatgtgtattgtttagttctctggaggttttggttgttgaaattcaaccacaacaaatcaatccaccacaagc |
322 |
Q |
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| T |
40526069 |
gaggaggatgaactcaactatgcttttgatgtgtattgtttagttctctggaggttttggttgttgaaattcaaccataacaaatcaatccaccacaagc |
40525970 |
T |
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| Q |
323 |
tgagcttctgttgctgaaaaagtgttatccatcgaca-ttagtttcaggcacacccatgaggaggatga |
390 |
Q |
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| T |
40525969 |
tgagcttctgttgctgaaaaagtgtgatccatcgacatttagtttcagg--cacccatgaggaggatga |
40525903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 285 - 390
Target Start/End: Original strand, 22113434 - 22113538
Alignment:
| Q |
285 |
gttgaaattcaaccacaacaaatcaatccaccacaagctgagcttctgttgctgaaaaagtgttatccatcgaca-ttagtttcaggcacacccatgagg |
383 |
Q |
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| T |
22113434 |
gttgaaattcaaccataacaaatcaatccaccacaagctgagcttctgttgctgaaaaagtgtgatccatcgacatttagtttcagg--cacccatgagg |
22113531 |
T |
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| Q |
384 |
aggatga |
390 |
Q |
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| T |
22113532 |
aggatga |
22113538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 22113481 - 22113576
Alignment:
| Q |
176 |
gttgctggaaaagtgtgatccaacgacattgagtttcaggcacccaggaggagaatgaactcaactatgcttttgatgtgtattgtttagttctct |
271 |
Q |
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| T |
22113481 |
gttgctgaaaaagtgtgatccatcgacatttagtttcaggcacccatgaggaggatgaacccaactacgcttcagatgtgcattgtttatttctct |
22113576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 176 - 271
Target Start/End: Complemental strand, 40525960 - 40525865
Alignment:
| Q |
176 |
gttgctggaaaagtgtgatccaacgacattgagtttcaggcacccaggaggagaatgaactcaactatgcttttgatgtgtattgtttagttctct |
271 |
Q |
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| T |
40525960 |
gttgctgaaaaagtgtgatccatcgacatttagtttcaggcacccatgaggaggatgaacccaactacgcttcagatgtgcattgtttatttctct |
40525865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 16883367 - 16883304
Alignment:
| Q |
199 |
cgacattgagtttcaggcacccaggaggagaatgaactcaactatgcttttgatgtgtattgtt |
262 |
Q |
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| T |
16883367 |
cgacattgagtttgaggcgcccaagaggaagatgaactcaactatgcttctgatgtgcattgtt |
16883304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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