View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21380_low_3 (Length: 380)
Name: NF21380_low_3
Description: NF21380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21380_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 40424569 - 40424242
Alignment:
| Q |
19 |
gataaacttacaagaacgagttggctgtgtctatgtatgtat----atattagtcttttgnnnnnnnnnnnnnnnnttagactatgaaaggaatctgtat |
114 |
Q |
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| T |
40424569 |
gataaacttacaagaacgagttggctgtgtctatgtatgtatgtatatattagtcttttgaaaagaaaagaaaaaattagactatgaaaggaatctgtat |
40424470 |
T |
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| Q |
115 |
agtatattatttttattattactccgcaggtatattggattatatgacaacaagaacaagaccgtctggatcgtagaacattgcattgtcttgggcggct |
214 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40424469 |
agtatattatt---attattactccgcaggtatattggattatatgacaacaagaacaagaccgtctggatcgtagaacattgcattgtcttgggcggct |
40424373 |
T |
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| Q |
215 |
gtacgggaaaacatatctagcaacttacg--tacacacatcctctgtacattaattgtccttttcgcaactattttttggtcagattccgttgccgttat |
312 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
40424372 |
gtacgggaaaacatatctagcaacttacgtatacacacatcctctgtacattaattgtccttttcggaacta--ttttggtcagattccgttgccgttat |
40424275 |
T |
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| Q |
313 |
ctaccaatatgatttaatctttgactcgttcat |
345 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
40424274 |
ctaccaatatgatttaatctttgactcgttcat |
40424242 |
T |
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