View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21380_low_7 (Length: 250)
Name: NF21380_low_7
Description: NF21380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21380_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 31 - 218
Target Start/End: Complemental strand, 1738433 - 1738247
Alignment:
| Q |
31 |
aaatgtcagaataacaaatggagtctcaagtggttgatcgaaaatggttacataaggctctagatgtaaggggttcttctttcccctgccattggagtct |
130 |
Q |
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| T |
1738433 |
aaatgtcagaataacaaatggagtctcaagtggttgatcgaaaatggttacataaagctctagatgtaaggggttcttgtttccca-gccattggagtct |
1738335 |
T |
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| Q |
131 |
caaatacacttttaaacaatttgtgtcgagagatgcacactttcaaagatatgagtttttgagtagcaaaggcagggaaaagaagtgc |
218 |
Q |
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| T |
1738334 |
caaatacacttttaaacaatttgtgtcgagagatgcacactttcaaagatatgagattttgagtagcaaaggcagggaaaagaagtgc |
1738247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 29 - 218
Target Start/End: Complemental strand, 1717029 - 1716837
Alignment:
| Q |
29 |
acaaatgtcagaataacaaatggagtctcaagtggttgatcgaaaatggttacataaggctctagatgtaa-ggggttcttctttcccctgccattggag |
127 |
Q |
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| T |
1717029 |
acaaatgtcaatataaccattggagtctcaagtggttgatcgagaatggttacataaagctctagatgcaaaggggttcttctttctccggccattacag |
1716930 |
T |
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| Q |
128 |
tctcaaatacacttttaaacaatttgtgtcgagagatgcacactttcaaagatatga--gtttttgagtagcaaaggcagggaaaagaagtgc |
218 |
Q |
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| T |
1716929 |
tctcaagtacacttttaaataatttgtgtcgagatatgcacacttttaaagatacgagggtttttgagcagcaaaggcggggaaatgaagtgc |
1716837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 1753581 - 1753505
Alignment:
| Q |
29 |
acaaatgtcagaataacaaatggagtctcaagtggttgatcgaaaatggttacataaggctctagatgtaaggggtt |
105 |
Q |
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|||||||||| ||||| | ||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
1753581 |
acaaatgtcaatataaccattggagtctcaagtggatgatcgagaatggttacataaagctctagatgtaaggggtt |
1753505 |
T |
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