View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21381_low_3 (Length: 224)

Name: NF21381_low_3

Description: NF21381

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF21381_low_3

[»] chr2 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 192; E-Value: 1e-104

Query Start/End: Original strand, 15 - 206

Target Start/End: Complemental strand, 38188882 - 38188691

Alignment:

Q	15	caaaggagaaggtttgtgttatatcttagtatcttatcattcattatagtaggcatgcatccatgtcgttcctcatacaaatttgttttaccttgtaggt	114	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38188882	caaaggagaaggtttgtgttatatcttagtatcttatcattcattatagtaggcatgcatccatgtcgttcctcatacaaatttgttttaccttgtaggt	38188783	T

Q	115	atatcaatatggtttctttcaattatatacctcatttccggtgtaccaggagcctatgtgatgtggtatcgccctctatatcgtgctacgag	206	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	38188782	atatcaatatggtttctttcaattatatacctcatttccggtgtaccaggagcctatgtgatgtggtatcgccctctatatcgtgctacgag	38188691	T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 35; E-Value: 0.00000000008

Query Start/End: Original strand, 124 - 202

Target Start/End: Complemental strand, 16184214 - 16184136

Alignment:

Q	124	tggtttctttcaattatatacctcatttccggtgtaccaggagcctatgtgatgtggtatcgccctctatatcgtgcta	202	Q
		\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\| \|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|
T	16184214	tggtttcttgctattatatattttatttctggtgttccagcatcctatgtgatgtggtatcgccctctttatcgcgcta	16184136	T

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