View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21382_high_10 (Length: 390)
Name: NF21382_high_10
Description: NF21382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21382_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 22278368 - 22278747
Alignment:
| Q |
1 |
tcaccaccaccccaaaaaaggcaacagaaaatagaattgatagcggaaatgatacctgaagaggctttgaagaagtaaatagcataaacatgaagagatg |
100 |
Q |
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| T |
22278368 |
tcacccccaccccaaaaaagacaacataaaatagaatcgatagaggaaatgatacctgaagaggctttgaagaagtagatagcataaacatgaaaagatg |
22278467 |
T |
|
| Q |
101 |
atggtacatacttcaacgcacaatttcatctttaatttctagccaaaagtctttgaaaaaactaaaatttataccatccagaccagaactcttaaaacag |
200 |
Q |
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| T |
22278468 |
atggtacatacttcaacgcacaatttcatcttttatttctagccaaaagtctttgaaaaaactaaaatttataccatccggaccagaactcttaaaacag |
22278567 |
T |
|
| Q |
201 |
tcccagatctccactttaacttcctcgaaattgaatagtttaatcaagacacgagacaaactacgaaaatgtaaatcatccaccacatgtctgatctcat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22278568 |
tcccagatctccactttaacttcctcgaaattgaatagtttaatcaagacatgagacaaactacgaaaatgtaaatcatccaccacatgtctgatctcat |
22278667 |
T |
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| Q |
301 |
tcctagccttaaaatgttcaaagacaacactacgcacgtcagacgccccctccacctgaacactgtcaactataacaaaa |
380 |
Q |
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| T |
22278668 |
tcctagccttaaaatgttcaaagacaacactacgcacgtcagacgccccctccacctgaacactgtcaactataacaaaa |
22278747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 21089945 - 21089887
Alignment:
| Q |
40 |
atagcggaaatgatacctgaagaggctttgaagaagtaaatagcataaacatgaagaga |
98 |
Q |
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| T |
21089945 |
atagaggaaatgatacctgaagggaatttgaagaaggaaatagcataaataggaagaga |
21089887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 380706 - 380758
Alignment:
| Q |
46 |
gaaatgatacctgaagaggctttgaagaagtaaatagcataaacatgaagaga |
98 |
Q |
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|||||||||||||| || |||||||||||| ||| |||||| ||||| ||||| |
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| T |
380706 |
gaaatgatacctgatgaagctttgaagaaggaaagagcatagacatgcagaga |
380758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 17829461 - 17829525
Alignment:
| Q |
28 |
aaaatagaattgatagcggaaatgatacctgaagaggctttgaagaagtaaatagcataaacatg |
92 |
Q |
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|||| ||||| ||||| ||| ||||||||||| | |||||||||||| ||||||||||| |||| |
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| T |
17829461 |
aaaaaagaatcgatagaggagatgatacctgagggagctttgaagaagaaaatagcataatcatg |
17829525 |
T |
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