View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21382_high_18 (Length: 251)

Name: NF21382_high_18
Description: NF21382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21382_high_18
NF21382_high_18
[»] chr2 (2 HSPs)
chr2 (1-233)||(33629058-33629288)
chr2 (1-233)||(23344034-23344251)
[»] chr7 (5 HSPs)
chr7 (4-233)||(25599235-25599454)
chr7 (1-233)||(43928664-43928882)
chr7 (1-233)||(29188337-29188555)
chr7 (1-233)||(45162181-45162399)
chr7 (1-84)||(21156741-21156824)
[»] chr4 (2 HSPs)
chr4 (1-233)||(24008581-24008799)
chr4 (27-115)||(52107552-52107640)
[»] chr6 (3 HSPs)
chr6 (1-140)||(19311211-19311344)
chr6 (181-233)||(1367382-1367434)
chr6 (192-233)||(19311394-19311435)
[»] chr8 (2 HSPs)
chr8 (7-115)||(42007724-42007832)
chr8 (1-116)||(26395131-26395243)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 33629288 - 33629058
Alignment:
Q  1 aaattgaaatactccatagttgaataattaaaatacctctaagatattattgtttagaatgaattggaaatattagttgttaaatgaaattccctctatg 100  Q
    |||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33629288 aaattgaaataccccatagttgaataattaaaatacttccaagatattattgtttagaatgaattggaaatattagttgttaaatgaaattccctctatg 33629189  T
Q  101 atctcttctcctacatgctaattgtaccaattcaaagccattcccaaacttgcagtgactttgttgagatttcnnnnnnnattccataatcagaataaaa 200  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |       ||||| ||||||||||||||    
T  33629188 atctcttgtcctacatgctaattg-accaattcaaagccattcccaaacttgcagtgactttgttg-gattactttttttattccgtaatcagaataaaa 33629091  T
Q  201 ttgtaatggagttttcccttctaccaaaaccat 233  Q
    ||||||||||||||||  |||||||||||||||    
T  33629090 ttgtaatggagttttctattctaccaaaaccat 33629058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 23344034 - 23344251
Alignment:
Q  1 aaattgaaatactccatagttgaataattaaaatacctctaagatattattgtttagaatgaattggaaatattagttgttaaatgaaattccctctatg 100  Q
    ||||||||||| |  ||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||    
T  23344034 aaattgaaatattttatagttgaataattaaaatacttcaaagatattattgtttaaaatgaattggaaatattagttgttaaatgcaatttcctctatg 23344133  T
Q  101 atctcttctcctacatgctaattgtaccaattcaaagccattcccaaacttgcagtgactttgttgagatttcnnnnnnnattccataatcagaataaaa 200  Q
    |||||||||||||||| |||||||||||||||||||||              ||||||||||| |||||||||       | | | ||||||||||||||    
T  23344134 atctcttctcctacatactaattgtaccaattcaaagc--------------cagtgactttgctgagatttcttttttta-tgcgtaatcagaataaaa 23344218  T
Q  201 ttgtaatggagttttcccttctaccaaaaccat 233  Q
    ||||||||||||||||| |||||||||||||||    
T  23344219 ttgtaatggagttttccattctaccaaaaccat 23344251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 25599235 - 25599454
Alignment:
Q  4 ttgaaatactccatagttgaataattaaaatacctctaagatattattgtttagaatgaattggaaatattagttgttaaatgaaattccctctatgatc 103  Q
    ||||||||||||||||||||||||||||||||| || ||          ||| |||||||||||||||||||||||||||||| |||||| ||||||||     
T  25599235 ttgaaatactccatagttgaataattaaaatacttccaa----------ttttgaatgaattggaaatattagttgttaaatgcaattccttctatgata 25599324  T
Q  104 tcttctcctacatgctaattgtaccaattcaaagccattcccaaacttgcagtgactttgttgagatttcnnnnnnnattccataatcagaataaaattg 203  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||       ||||| |||||||||||||||||    
T  25599325 tcttctcctacatgctaattgtaccaattcaaagccatttccaaactttcagtgactttgttgagatttctttttttattccgtaatcagaataaaattg 25599424  T
Q  204 taatggagttttcccttctaccaaaaccat 233  Q
    |||||||||||||| |||||||||||||||    
T  25599425 taatggagttttccattctaccaaaaccat 25599454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 43928664 - 43928882
Alignment:
Q  1 aaattgaaatactccatagttgaataattaaaatacctctaagatattattgtttagaatgaattggaaatattagttgttaaatgaaattccctctatg 100  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  43928664 aaattgaaatactccatagttgaataattaaaatacttcaaagatattattgtttagaatgaattggaaatattagttgttaaatgcaattcactctatg 43928763  T
Q  101 atctcttctcctacatgctaattgtaccaattcaaagccattcccaaacttgcagtgactttgttgagatttcnnnnnnnattccataatcagaataaaa 200  Q
    |||||||||||||||| |||||||||||||||||||||              ||||||||||| |||||||||       || || ||||||||||||||    
T  43928764 atctcttctcctacatactaattgtaccaattcaaagc--------------cagtgactttgctgagatttctttttttatgccgtaatcagaataaaa 43928849  T
Q  201 ttgtaatggagttttcccttctaccaaaaccat 233  Q
    ||||||||||||||||| |||||||||||||||    
T  43928850 ttgtaatggagttttccattctaccaaaaccat 43928882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 29188555 - 29188337
Alignment:
Q  1 aaattgaaatactccatagttgaataattaaaatacctctaagatattattgtttagaatgaattggaaatattagttgttaaatgaaattccctctatg 100  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||    
T  29188555 aaattgaaatactccatagttgaataattaaaatacttcaaagatattattgtttaaaatgaattggaaatattagttgttaaatgcaatttcctctatg 29188456  T
Q  101 atctcttctcctacatgctaattgtaccaattcaaagccattcccaaacttgcagtgactttgttgagatttcnnnnnnnattccataatcagaataaaa 200  Q
    |||||||||||||||| |||||||||||||||||||||              || |||||||| |||||||||       || || ||||||||||||||    
T  29188455 atctcttctcctacatactaattgtaccaattcaaagc--------------caatgactttgctgagatttctttttttatgccgtaatcagaataaaa 29188370  T
Q  201 ttgtaatggagttttcccttctaccaaaaccat 233  Q
    ||||||||||||||||| |||||||||||||||    
T  29188369 ttgtaatggagttttccattctaccaaaaccat 29188337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 45162181 - 45162399
Alignment:
Q  1 aaattgaaatactccatagttgaataattaaaatacctctaagatattattgtttagaatgaattggaaatattagttgttaaatgaaattccctctatg 100  Q
    ||||||||||| || ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  45162181 aaattgaaatattctatagttgaataattaaaatacttcaaagatattattgtttagaatgaattggaaatattagttgttaaatgcaattccctctatg 45162280  T
Q  101 atctcttctcctacatgctaattgtaccaattcaaagccattcccaaacttgcagtgactttgttgagatttcnnnnnnnattccataatcagaataaaa 200  Q
    |||||||||||||||| |||||||||||||||||||||              ||||||||||| ||||||||        || || ||||||||||||||    
T  45162281 atctcttctcctacatactaattgtaccaattcaaagc--------------cagtgactttgctgagatttatttttttatgccgtaatcagaataaaa 45162366  T
Q  201 ttgtaatggagttttcccttctaccaaaaccat 233  Q
    ||||||||||||||||| |||||||||||||||    
T  45162367 ttgtaatggagttttccattctaccaaaaccat 45162399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 21156824 - 21156741
Alignment:
Q  1 aaattgaaatactccatagttgaataattaaaatacctctaagatattattgtttagaatgaattggaaatattagttgttaaa 84  Q
    ||||| |||| |||||||  |||||||||||||||| || |||||||||||| ||| ||||||||| ||| |||||||| ||||    
T  21156824 aaattaaaatgctccataactgaataattaaaatacttccaagatattattgcttataatgaattgaaaacattagttggtaaa 21156741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 24008581 - 24008799
Alignment:
Q  1 aaattgaaatactccatagttgaataattaaaatacctctaagatattattgtttagaatgaattggaaatattagttgttaaatgaaattccctctatg 100  Q
    ||||||||||||| |||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  24008581 aaattgaaatactgcatagttgaataattaaaatacttcaaagatattattgtttaaaatgaattggaaatattagttgttaaatgcaattccctctatg 24008680  T
Q  101 atctcttctcctacatgctaattgtaccaattcaaagccattcccaaacttgcagtgactttgttgagatttcnnnnnnnattccataatcagaataaaa 200  Q
    |||||||||||||||| |||||||||||||||||||||              || |||||||| |||||||||       || || ||||||||||||||    
T  24008681 atctcttctcctacatactaattgtaccaattcaaagc--------------caatgactttgctgagatttctttttttatgccgtaatcagaataaaa 24008766  T
Q  201 ttgtaatggagttttcccttctaccaaaaccat 233  Q
    ||||||||||||||||| |||||||||||||||    
T  24008767 ttgtaatggagttttccattctaccaaaaccat 24008799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 52107640 - 52107552
Alignment:
Q  27 attaaaatacctctaagatattattgtttagaatgaattggaaatattagttgttaaatgaaattccctctatgatctcttctcctaca 115  Q
    |||||||||| || || |||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  52107640 attaaaatacttccaaaatattattgtttagaacgaattggaaatattagttgttaaatgcaattccctatatgatctcttctcctaca 52107552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 19311211 - 19311344
Alignment:
Q  1 aaattgaaatactccatagttgaataattaaaatacctctaagatattattgtttagaatgaattggaaatattagttgttaaatgaaattccctctatg 100  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  19311211 aaattgaaatactccatagttgaataattaaaatacttcaaagatattattgtttagaaagaattggaaatattagttgttaaatgcaattccctctatg 19311310  T
Q  101 atctcttctcctacatgctaattgtaccaattcaaagcca 140  Q
    |      ||||||||| |||||||||||||||||||||||    
T  19311311 a------ctcctacatactaattgtaccaattcaaagcca 19311344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 1367434 - 1367382
Alignment:
Q  181 attccataatcagaataaaattgtaatggagttttcccttctaccaaaaccat 233  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  1367434 attccgtaatcagaataaaattgtaatggagttttccattctaccaaaaccat 1367382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 19311394 - 19311435
Alignment:
Q  192 agaataaaattgtaatggagttttcccttctaccaaaaccat 233  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  19311394 agaataaaattgtaatggagttttccattctaccaaaaccat 19311435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 42007724 - 42007832
Alignment:
Q  7 aaatactccatagttgaataattaaaatacctctaagatattattgtttagaatgaattggaaatattagttgttaaatgaaattccctctatgatctct 106  Q
    ||||||||||||  || ||||||||||||| || |||||||||||||||| |||||||   |||||||||||| |||||| ||||||||||||||||||     
T  42007724 aaatactccataactggataattaaaatacttccaagatattattgtttaaaatgaatgaaaaatattagttggtaaatgcaattccctctatgatctcg 42007823  T
Q  107 tctcctaca 115  Q
    |||||||||    
T  42007824 tctcctaca 42007832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 26395243 - 26395131
Alignment:
Q  1 aaattgaaatactccatagttgaataattaaaatacctctaagatattattgtttagaatgaattggaaatattagttgttaaatgaaattccctctatg 100  Q
    ||||||||||||||||||  | |||||||||||||| |  ||||||||||| ||||||||||||||||||||| |    ||||||| ||||| |||||||    
T  26395243 aaattgaaatactccataactaaataattaaaatacttgcaagatattattttttagaatgaattggaaatatca---attaaatgcaattctctctatg 26395147  T
Q  101 atctcttctcctacat 116  Q
    ||||||||||||||||    
T  26395146 atctcttctcctacat 26395131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University