View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21382_high_2 (Length: 558)

Name: NF21382_high_2
Description: NF21382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21382_high_2
NF21382_high_2
[»] chr8 (5 HSPs)
chr8 (90-542)||(26606506-26606958)
chr8 (1-93)||(26605821-26605913)
chr8 (31-93)||(26605914-26605976)
chr8 (244-291)||(18081796-18081843)
chr8 (243-285)||(14682401-14682443)
[»] chr6 (2 HSPs)
chr6 (494-535)||(29145143-29145184)
chr6 (496-535)||(25528998-25529037)
[»] scaffold0129 (1 HSPs)
scaffold0129 (243-292)||(33997-34046)
[»] chr1 (1 HSPs)
chr1 (242-279)||(361445-361482)
[»] chr2 (2 HSPs)
chr2 (243-291)||(7524533-7524581)
chr2 (243-279)||(27735997-27736033)


Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 90 - 542
Target Start/End: Original strand, 26606506 - 26606958
Alignment:
Q  90 atatggatattttgggatctggtattaatggcactctttgtctccatcgatatcatagaacaattgtgctctggaacccaactattggggaatttaaggt 189  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26606506 atatggatattttgggatctggtattaatggtactctttgtctccatcgatatcatagaacaattgtgctctggaacccaactattggggaatttaaggt 26606605  T
Q  190 cattcctcctagccccattgattctcaacttcatgaccccacttcagtcactcttcatggatttggttatgattctgttagagatgattacaaggtgatt 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26606606 cattcctcctagccccattgattctcaacttcatgaccccacttcagtcactcttcatggatttggttatgattctgttagagatgattacaaggtgatt 26606705  T
Q  290 cgacatgcagagtttcatcagagaaacgcctttgctggtagtctcatagttgtgccattggagcgtaggcaagtctgggagatgtatagcttaagaagtg 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26606706 cgacatgcagagtttcatcagagaaacgcctttgctggtagtctcatagttgtgccattggagcgtaggcaagtctgggagatgtatagcttaagaagtg 26606805  T
Q  390 aatcttggagaaaactcaatgttgatatgcttccttgtaatagaagaaatgctggtgctgaggtgtatatggacggagtttgccattggtggggatatgc 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26606806 aatcttggagaaaactcaatgttgatatgcttccttgtaatagaagaaatgctggtgctgaggtgtatatggacggagtttgccattggtggggatatgc 26606905  T
Q  490 atacgatggaccatgtttggtatcatttaacttgagtagtgaggtgatcctta 542  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26606906 atacgatggaccatgtttggtatcatttaacttgagtagtgaggtgatcctta 26606958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 26605913 - 26605821
Alignment:
Q  1 atttgagtcattgtatctttctttttaactttttaaatgcgacatatttcaaaacttaatcaataaggaatcgtgaatattcagaatttatat 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26605913 atttgagtcattgtatctttctttttaactttttaaatgcgacatatttcaaaacttaatcgataaggaatcgtgaatattcagaatttatat 26605821  T

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Target: chr8; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 26605976 - 26605914
Alignment:
Q  31 ttttaaatgcgacatatttcaaaacttaatcaataaggaatcgtgaatattcagaatttatat 93  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26605976 ttttaaatgcgacatatttcaaaacttaatcgataaggaatcgtgaatattcagaatttatat 26605914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 18081796 - 18081843
Alignment:
Q  244 tcatggatttggttatgattctgttagagatgattacaaggtgattcg 291  Q
    |||||| ||||||||||||| ||||| ||||||||| |||||||||||    
T  18081796 tcatgggtttggttatgattgtgttacagatgattataaggtgattcg 18081843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 285
Target Start/End: Complemental strand, 14682443 - 14682401
Alignment:
Q  243 ttcatggatttggttatgattctgttagagatgattacaaggt 285  Q
    ||||||||||||||||||||  ||||||||||||||| |||||    
T  14682443 ttcatggatttggttatgatcgtgttagagatgattataaggt 14682401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 494 - 535
Target Start/End: Original strand, 29145143 - 29145184
Alignment:
Q  494 gatggaccatgtttggtatcatttaacttgagtagtgaggtg 535  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  29145143 gatggaccatgtttggtgtcattttacttgagtagtgaggtg 29145184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 535
Target Start/End: Complemental strand, 25529037 - 25528998
Alignment:
Q  496 tggaccatgtttggtatcatttaacttgagtagtgaggtg 535  Q
    |||||||||||||||||||||||||||||| | |||||||    
T  25529037 tggaccatgtttggtatcatttaacttgagcaatgaggtg 25528998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 292
Target Start/End: Complemental strand, 34046 - 33997
Alignment:
Q  243 ttcatggatttggttatgattctgttagagatgattacaaggtgattcga 292  Q
    |||||||||||||||||||   |||||||||||| |||||||| ||||||    
T  34046 ttcatggatttggttatgagcatgttagagatgactacaaggtcattcga 33997  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 361445 - 361482
Alignment:
Q  242 cttcatggatttggttatgattctgttagagatgatta 279  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  361445 cttcatgggtttggttatgattttgttagagatgatta 361482  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 7524581 - 7524533
Alignment:
Q  243 ttcatggatttggttatgattctgttagagatgattacaaggtgattcg 291  Q
    ||||||| ||||||||||||  |||||| |||||||| |||||||||||    
T  7524581 ttcatgggtttggttatgatcgtgttagggatgattataaggtgattcg 7524533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 27736033 - 27735997
Alignment:
Q  243 ttcatggatttggttatgattctgttagagatgatta 279  Q
    ||||||||||||||||||||  |||||||||||||||    
T  27736033 ttcatggatttggttatgatcatgttagagatgatta 27735997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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