View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21382_high_23 (Length: 226)
Name: NF21382_high_23
Description: NF21382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21382_high_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 39936795 - 39936899
Alignment:
| Q |
112 |
tcatataacaaactaaatccatttttaattaattttcgattcatcctttgaacnnnnnnngaaattcataacatgaactctcactggagaagagcacaga |
211 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39936795 |
tcatataacaaactaaatccattttcaattaattttttattcatcctttgaaaaataat---aattcataacatgaactctcaccggagaagagcacaga |
39936891 |
T |
|
| Q |
212 |
aggacata |
219 |
Q |
| |
|
|||||||| |
|
|
| T |
39936892 |
aggacata |
39936899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 39936738 - 39936783
Alignment:
| Q |
9 |
acatcatcactttcaattactcaacacaaatatg-agcaattgtgg |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39936738 |
acatcatcactttcaattactcaacacaaatatgcagcaattgtgg |
39936783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 20209062 - 20209017
Alignment:
| Q |
112 |
tcatataacaaactaaatccatttttaattaattttcgattcatcc |
157 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||||||||| |||||||| |
|
|
| T |
20209062 |
tcatataacaagctaaacccattttcaattaattttctattcatcc |
20209017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University