View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21382_high_3 (Length: 491)
Name: NF21382_high_3
Description: NF21382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21382_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 4 - 473
Target Start/End: Original strand, 9585706 - 9586175
Alignment:
| Q |
4 |
atgtgtcctcacctccccc-ggtttgaaaaccaattatgattatctcccgatcccctactccactctctcaatctcttaaccaacgagacgagtatctcg |
102 |
Q |
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| T |
9585706 |
atgtgtcctcacctccccccggtttgaaaaccaattatgattatctcccgatcccctactccactct--caatctcttaaccaaagagacgagtatctcg |
9585803 |
T |
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| Q |
103 |
tgttacatttaattttccctgcctcttcaccgtacttgcttttgagaaccttgtaccagagtcgatctttctatgttctcaacctccatgatcatttcct |
202 |
Q |
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| T |
9585804 |
tgttacatttaattttccctgcctcttcaccgtacttgcttttgagaaccttgtaccagagtcgatctttctatgttctcaacctccatgatcatttcct |
9585903 |
T |
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| Q |
203 |
tat-cttaaaaaccttgtcccaatttacccaattcactctcctactatcattatacccaccccacaaaaattgctttaaaagagattctagtttagaaaa |
301 |
Q |
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| T |
9585904 |
tatccttaaaaaccttgtcccaattgacccaattcactctcctactctcatgatacctaccccacaaaaattgctttaaaagagattctagtttagaaaa |
9586003 |
T |
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| Q |
302 |
aatacctgccggagctttgaagaaagaaaggtagaacactgatatggaagaaagaaagnnnnnnnnnnnnctaaaatgtgtatgcattcatgttatgaaa |
401 |
Q |
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| T |
9586004 |
aatacctgccggagctttgaagaaagaaaggtagaacactggtatggaagaaagaaagaaaagaaaaaaactaaaatgtgtatgcattcatgttatgaaa |
9586103 |
T |
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| Q |
402 |
caacacccaagtgcaattgtaaacatatttttatgcacccaaaaaactaagactatgcaacatccaaatact |
473 |
Q |
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| T |
9586104 |
caacacccaagtgcaatcgtaaacatatttttatgcacgcaaaaaactaagactatgcaacatccaaatact |
9586175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 24 - 190
Target Start/End: Original strand, 9580219 - 9580389
Alignment:
| Q |
24 |
gtttgaaaaccaattatgattatctcccgatcccctactccactctctcaatctct--taaccaacgagacgagtatctcgtgttacatttaattttccc |
121 |
Q |
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|||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| ||| || |||||| | || ||||||||||||||||||||| |
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| T |
9580219 |
gtttgaaaaccaattatgattacctcccaatcccttactccactctctcaatctctcttaattaaagagacggatctcacgtgttacatttaattttccc |
9580318 |
T |
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| Q |
122 |
tgcctcttcaccgtacttgcttttg--agaaccttgtaccagagtcgatctttctatgttctcaacctcca |
190 |
Q |
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| T |
9580319 |
catctcttccctatacttgcttttgtgagaaccttgtaccacagtcgatctttctccgttctcaacctcca |
9580389 |
T |
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