View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21382_low_1 (Length: 572)

Name: NF21382_low_1
Description: NF21382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21382_low_1
NF21382_low_1
[»] chr7 (7 HSPs)
chr7 (429-554)||(25599329-25599454)
chr7 (474-554)||(43928802-43928882)
chr7 (508-554)||(29188337-29188383)
chr7 (508-554)||(45162353-45162399)
chr7 (101-156)||(41708605-41708660)
chr7 (124-176)||(23138682-23138734)
chr7 (429-461)||(29188416-29188448)
[»] chr2 (3 HSPs)
chr2 (430-554)||(33629058-33629180)
chr2 (508-554)||(23344205-23344251)
chr2 (105-198)||(636978-637071)
[»] chr6 (3 HSPs)
chr6 (502-554)||(1367382-1367434)
chr6 (513-554)||(19311394-19311435)
chr6 (429-461)||(19311312-19311344)
[»] chr4 (5 HSPs)
chr4 (508-554)||(24008753-24008799)
chr4 (101-183)||(13849366-13849448)
chr4 (105-160)||(12107168-12107223)
chr4 (113-205)||(9696306-9696398)
chr4 (95-159)||(46855851-46855915)
[»] chr8 (1 HSPs)
chr8 (124-210)||(42650201-42650286)
[»] chr1 (5 HSPs)
chr1 (95-159)||(8050486-8050550)
chr1 (124-156)||(16939476-16939508)
chr1 (121-214)||(44836123-44836216)
chr1 (95-207)||(50905438-50905550)
chr1 (104-160)||(52427222-52427278)
[»] chr3 (1 HSPs)
chr3 (95-135)||(37928842-37928882)


Alignment Details
Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 429 - 554
Target Start/End: Original strand, 25599329 - 25599454
Alignment:
Q  429 ctcctacatgctaattgtaccaattcaaagccattcccaaacttgcagtgactttgttgagatttcnnnnnnnattccataatcagaataaaattgtaat 528  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||       ||||| |||||||||||||||||||||    
T  25599329 ctcctacatgctaattgtaccaattcaaagccatttccaaactttcagtgactttgttgagatttctttttttattccgtaatcagaataaaattgtaat 25599428  T
Q  529 ggagttttcccttctaccaaaaccat 554  Q
    |||||||||| |||||||||||||||    
T  25599429 ggagttttccattctaccaaaaccat 25599454  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 474 - 554
Target Start/End: Original strand, 43928802 - 43928882
Alignment:
Q  474 cagtgactttgttgagatttcnnnnnnnattccataatcagaataaaattgtaatggagttttcccttctaccaaaaccat 554  Q
    ||||||||||| |||||||||       || || ||||||||||||||||||||||||||||||| |||||||||||||||    
T  43928802 cagtgactttgctgagatttctttttttatgccgtaatcagaataaaattgtaatggagttttccattctaccaaaaccat 43928882  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 508 - 554
Target Start/End: Complemental strand, 29188383 - 29188337
Alignment:
Q  508 taatcagaataaaattgtaatggagttttcccttctaccaaaaccat 554  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  29188383 taatcagaataaaattgtaatggagttttccattctaccaaaaccat 29188337  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 508 - 554
Target Start/End: Original strand, 45162353 - 45162399
Alignment:
Q  508 taatcagaataaaattgtaatggagttttcccttctaccaaaaccat 554  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  45162353 taatcagaataaaattgtaatggagttttccattctaccaaaaccat 45162399  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 41708660 - 41708605
Alignment:
Q  101 tagctcaaccgacaaacatgtcaaaattgttaggtcagatgttatgattggggttc 156  Q
    ||||||||| || ||| ||||||||||||||||||| ||||||||||| |||||||    
T  41708660 tagctcaactgataaaaatgtcaaaattgttaggtcggatgttatgatcggggttc 41708605  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 23138682 - 23138734
Alignment:
Q  124 aaattgttaggtcagatgttatgattggggttcaaacatcggcatctccactt 176  Q
    ||||||||||||| |||||||||| |||||||  ||| |||| ||||||||||    
T  23138682 aaattgttaggtcggatgttatgactggggtttgaacctcggtatctccactt 23138734  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 461
Target Start/End: Complemental strand, 29188448 - 29188416
Alignment:
Q  429 ctcctacatgctaattgtaccaattcaaagcca 461  Q
    ||||||||| |||||||||||||||||||||||    
T  29188448 ctcctacatactaattgtaccaattcaaagcca 29188416  T

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Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 430 - 554
Target Start/End: Complemental strand, 33629180 - 33629058
Alignment:
Q  430 tcctacatgctaattgtaccaattcaaagccattcccaaacttgcagtgactttgttgagatttcnnnnnnnattccataatcagaataaaattgtaatg 529  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |       ||||| ||||||||||||||||||||||    
T  33629180 tcctacatgctaattg-accaattcaaagccattcccaaacttgcagtgactttgttg-gattactttttttattccgtaatcagaataaaattgtaatg 33629083  T
Q  530 gagttttcccttctaccaaaaccat 554  Q
    ||||||||  |||||||||||||||    
T  33629082 gagttttctattctaccaaaaccat 33629058  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 508 - 554
Target Start/End: Original strand, 23344205 - 23344251
Alignment:
Q  508 taatcagaataaaattgtaatggagttttcccttctaccaaaaccat 554  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  23344205 taatcagaataaaattgtaatggagttttccattctaccaaaaccat 23344251  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 636978 - 637071
Alignment:
Q  105 tcaaccgacaaacatgtcaaaattgttaggtcagatgttatgattggggttcaaacatcggcatctccactttgtgtgtatggatttatgatga 198  Q
    |||||||  ||| ||||| ||||||||||  | || ||||||||||||||||||||||| |   ||||||||||||||| ||  ||||||||||    
T  636978 tcaaccggtaaaaatgtcgaaattgttagaccggacgttatgattggggttcaaacatctgttcctccactttgtgtgtgtgagtttatgatga 637071  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 502 - 554
Target Start/End: Complemental strand, 1367434 - 1367382
Alignment:
Q  502 attccataatcagaataaaattgtaatggagttttcccttctaccaaaaccat 554  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  1367434 attccgtaatcagaataaaattgtaatggagttttccattctaccaaaaccat 1367382  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 513 - 554
Target Start/End: Original strand, 19311394 - 19311435
Alignment:
Q  513 agaataaaattgtaatggagttttcccttctaccaaaaccat 554  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  19311394 agaataaaattgtaatggagttttccattctaccaaaaccat 19311435  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 461
Target Start/End: Original strand, 19311312 - 19311344
Alignment:
Q  429 ctcctacatgctaattgtaccaattcaaagcca 461  Q
    ||||||||| |||||||||||||||||||||||    
T  19311312 ctcctacatactaattgtaccaattcaaagcca 19311344  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 508 - 554
Target Start/End: Original strand, 24008753 - 24008799
Alignment:
Q  508 taatcagaataaaattgtaatggagttttcccttctaccaaaaccat 554  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  24008753 taatcagaataaaattgtaatggagttttccattctaccaaaaccat 24008799  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 13849366 - 13849448
Alignment:
Q  101 tagctcaaccgacaaacatgtcaaaattgttaggtcagatgttatgattggggttcaaacatcggcatctccactttgtgtgt 183  Q
    ||||||||| |||||| ||||| |||||||||||||||| ||  |||| ||||||| |||  || || |||||||||||||||    
T  13849366 tagctcaactgacaaaaatgtcgaaattgttaggtcagacgtcttgatcggggttcgaaccccgacacctccactttgtgtgt 13849448  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 12107223 - 12107168
Alignment:
Q  105 tcaaccgacaaacatgtcaaaattgttaggtcagatgttatgattggggttcaaac 160  Q
    ||||| || ||| ||||| ||||||||||||| |||||||||||||| ||||||||    
T  12107223 tcaactgataaaaatgtcgaaattgttaggtcggatgttatgattggagttcaaac 12107168  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 113 - 205
Target Start/End: Complemental strand, 9696398 - 9696306
Alignment:
Q  113 caaacatgtcaaaattgttaggtcagatgttatgattggggttcaaacatcggcatctccactttgtgtgtatggatttatgatgactttatc 205  Q
    |||| ||||| |||||||||||||  | |||||||| ||||||| ||| |||| | ||||||||| ||||| |   |||||||||| ||||||    
T  9696398 caaaaatgtcgaaattgttaggtcgaacgttatgatcggggttcgaacctcggtacctccactttatgtgtgtaagtttatgatgaatttatc 9696306  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 46855851 - 46855915
Alignment:
Q  95 aagttttagctcaaccgacaaacatgtcaaaattgttaggtcagatgttatgattggggttcaaa 159  Q
    |||| |||||||||| | |||| ||||||||||||| |||||||||  |||||  ||||||||||    
T  46855851 aagtgttagctcaactgccaaaaatgtcaaaattgtaaggtcagatactatgaacggggttcaaa 46855915  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 124 - 210
Target Start/End: Original strand, 42650201 - 42650286
Alignment:
Q  124 aaattgttaggtcagatgttatgattggggttcaaacatcggcatctccactttgtgtgtatggatttatgatgactttatcatttc 210  Q
    ||||||||||||| ||||  ||||||||||||| ||| |||| | |||||| || ||||||||  ||||| ||||||||||||||||    
T  42650201 aaattgttaggtcggatgccatgattggggttcgaacctcggtacctccac-ttatgtgtatgagtttataatgactttatcatttc 42650286  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 8050486 - 8050550
Alignment:
Q  95 aagttttagctcaaccgacaaacatgtcaaaattgttaggtcagatgttatgattggggttcaaa 159  Q
    |||| ||||||||||||||||| ||||| ||||||||||| |  |||||||||  ||||||||||    
T  8050486 aagtcttagctcaaccgacaaaaatgtcgaaattgttaggccgaatgttatgaccggggttcaaa 8050550  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 16939476 - 16939508
Alignment:
Q  124 aaattgttaggtcagatgttatgattggggttc 156  Q
    |||||||||||||||||||||||||||||||||    
T  16939476 aaattgttaggtcagatgttatgattggggttc 16939508  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 44836216 - 44836123
Alignment:
Q  121 tcaaaattgttaggtcagatgttatgattggggttcaaacatcggcatctccactttgtgtgtatggatttatgatgactttatcatttcatct 214  Q
    |||||||||||||||| || || ||||| ||||||| |||  ||| ||||||||||| | ||| ||  ||||||||| |||| |||| ||||||    
T  44836216 tcaaaattgttaggtcggacgtcatgatcggggttcgaaccccggtatctccactttatatgtgtgagtttatgatggctttgtcatctcatct 44836123  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 207
Target Start/End: Original strand, 50905438 - 50905550
Alignment:
Q  95 aagttttagctcaaccgacaaacatgtcaaaattgttaggtcagatgttatgattggggttcaaacatcggcatctccactttgtgtgtatggatttatg 194  Q
    |||| |||||||||| || ||| |||| |||||||||||| || |  | |||||||| |||| ||| |||| | ||| ||||||||||| ||  |||||     
T  50905438 aagtcttagctcaactgataaaaatgttaaaattgttaggccaaacatcatgattggagttcgaacctcggtacctctactttgtgtgtgtgagtttata 50905537  T
Q  195 atgactttatcat 207  Q
    |||||||| ||||    
T  50905538 atgactttgtcat 50905550  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 52427222 - 52427278
Alignment:
Q  104 ctcaaccgacaaacatgtcaaaattgttaggtcagatgttatgattggggttcaaac 160  Q
    |||||| |||||| ||  ||||||||||||| |||||| |||||| |||||||||||    
T  52427222 ctcaactgacaaaaataccaaaattgttaggccagatgctatgatcggggttcaaac 52427278  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 37928842 - 37928882
Alignment:
Q  95 aagttttagctcaaccgacaaacatgtcaaaattgttaggt 135  Q
    |||| |||||||||| |||||| ||||||||||||||||||    
T  37928842 aagtcttagctcaactgacaaaaatgtcaaaattgttaggt 37928882  T

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