View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21382_low_11 (Length: 385)
Name: NF21382_low_11
Description: NF21382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21382_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 36063865 - 36064085
Alignment:
| Q |
8 |
tgagatgaacggtttcagatatgacgctagggtttgatacttatagttatggtcgtgctcttggaagaaaaagggttgttgtttcaaacaacgatgaagc |
107 |
Q |
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| T |
36063865 |
tgagaagaacggtttcagatatgacgctagggtttgatacttatagttatggtcgtgctcttggaagaaaaagggttgttgtttcaaacaacgatgaagc |
36063964 |
T |
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| Q |
108 |
ttttgaatccaatcctgtaacggttccattgaagagaatgtgcagtggaagatttgataccatttctgaaaaatctcgccttgaagcccttcctcaagac |
207 |
Q |
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| T |
36063965 |
ttttgaatccaatcctgtaacggttccattgaagagaatgtgcagtggaagattcgataccatttctgaaaaatctcgccttgaagcccttcctcaagat |
36064064 |
T |
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| Q |
208 |
ctccttgtaagttttgcaatc |
228 |
Q |
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||||||||||||||||||||| |
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| T |
36064065 |
ctccttgtaagttttgcaatc |
36064085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 306 - 378
Target Start/End: Complemental strand, 40692544 - 40692477
Alignment:
| Q |
306 |
gtgagtaagtctctagcattatctatactactagtatagtatgatgtcactagaataacagtattctttgatt |
378 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40692544 |
gtgagtaagtctctagcattatcta-----ctagtatagtatgatgtcactagaataacagtattctttgatt |
40692477 |
T |
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