View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21382_low_12 (Length: 338)
Name: NF21382_low_12
Description: NF21382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21382_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 161 - 324
Target Start/End: Complemental strand, 10814801 - 10814629
Alignment:
| Q |
161 |
cataataacattcatttcttaaatcggtgttgaagaga---------aacatgtttgttcaaaattgattctttatgcatttctagtactggttttgagt |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10814801 |
cataataacattcatttcttaaatcggtgttgaagagatttcagagaaacatgtttgttcaaaattgattctttatgcatttctagtactggttttgagt |
10814702 |
T |
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| Q |
252 |
aatttcccattatatgtgctttattagcttaagaaggaacattggacttagattttccatatatccagttttt |
324 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10814701 |
aatttcccattatatgtgctttattagcttgagaaggaacattggacttagactttccatatatccagttttt |
10814629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 194 - 315
Target Start/End: Complemental strand, 19806681 - 19806560
Alignment:
| Q |
194 |
agagaaacatgtttgttcaaaattgattctttatgcatttctagtactggttttgagtaatttcccattatatgtgctttattagcttaagaaggaacat |
293 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19806681 |
agagaaacatgtttattcaaaattgattctttatggatttctagtactggttttgagtaatttcccattatatgtgctttattagcttaagaaggaacat |
19806582 |
T |
|
| Q |
294 |
tggacttagattttccatatat |
315 |
Q |
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|||||||||||||||||||||| |
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| T |
19806581 |
tggacttagattttccatatat |
19806560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 194 - 323
Target Start/End: Complemental strand, 19575546 - 19575417
Alignment:
| Q |
194 |
agagaaacatgtttgttcaaaattgattctttatgcatttctagtactggttttgagtaatttcccattatatgtgctttattagcttaagaaggaacat |
293 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
19575546 |
agagaaacatgtttgttcaaaatggattctttatgcatttctagtactggttttgagtaatttcccattatatgtgctttattagcttgagaaggaacat |
19575447 |
T |
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| Q |
294 |
tggacttagattttccatatatccagtttt |
323 |
Q |
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|||||||||||||| ||||||||||||||| |
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| T |
19575446 |
tggacttagatttttcatatatccagtttt |
19575417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 34795654 - 34795616
Alignment:
| Q |
17 |
actagagggaagtaggaagtgagattctctttctttcat |
55 |
Q |
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| T |
34795654 |
actagagggaagtaggaagtgagattctctttctttcat |
34795616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 34780806 - 34780768
Alignment:
| Q |
17 |
actagagggaagtaggaagtgagattctctttctttcat |
55 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
34780806 |
actaaagggaagtaggaagtgagattctctttctttcat |
34780768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 34771343 - 34771305
Alignment:
| Q |
17 |
actagagggaagtaggaagtgagattctctttctttcat |
55 |
Q |
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||||||| ||||||||||| ||||||||||||||||||| |
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| T |
34771343 |
actagagagaagtaggaagcgagattctctttctttcat |
34771305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 9e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 194 - 323
Target Start/End: Original strand, 14368010 - 14368139
Alignment:
| Q |
194 |
agagaaacatgtttgttcaaaattgattctttatgcatttctagtactggttttgagtaatttcccattatatgtgctttattagcttaagaaggaacat |
293 |
Q |
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|
||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14368010 |
agagaaacatgtttgttcaaaatggattctttctgcatttctagtactgattttgagtaatttcccattatatgtgctttattagcttgagaaggaacat |
14368109 |
T |
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| Q |
294 |
tggacttagattttccatatatccagtttt |
323 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
14368110 |
tggacttagattttccatatatccagtttt |
14368139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 194 - 325
Target Start/End: Original strand, 18975004 - 18975135
Alignment:
| Q |
194 |
agagaaacatgtttgttcaaaattgattctttatgcatttctagtactggttttgagtaatttcccattatatgtgctttattagcttaagaaggaacat |
293 |
Q |
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|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
18975004 |
agagaaacatgtttattcaaaattgattctttatggatttctagtactggttttgagtaatttcccattatatgtgctttattagcttgagaaggaacat |
18975103 |
T |
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| Q |
294 |
tggacttagattttccatatatccagtttttg |
325 |
Q |
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|||||||||||||||||||||| ||| ||||| |
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| T |
18975104 |
tggacttagattttccatatattcagattttg |
18975135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 194 - 325
Target Start/End: Complemental strand, 5330870 - 5330739
Alignment:
| Q |
194 |
agagaaacatgtttgttcaaaattgattctttatgcatttctagtactggttttgagtaatttcccattatatgtgctttattagcttaagaaggaacat |
293 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5330870 |
agagaaacatgtttattcaaaattgattctttatggatttctagtactggttttgagtaatttcccattatatgtgctttattagcttgagaaggaacat |
5330771 |
T |
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| Q |
294 |
tggacttagattttccatatatccagtttttg |
325 |
Q |
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|||||||||||||||||||||| ||| ||||| |
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| T |
5330770 |
tggacttagattttccatatattcagattttg |
5330739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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