View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21382_low_18 (Length: 251)

Name: NF21382_low_18
Description: NF21382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21382_low_18
NF21382_low_18
[»] chr7 (8 HSPs)
chr7 (73-233)||(25599294-25599454)
chr7 (1-78)||(29188531-29188608)
chr7 (1-78)||(43928611-43928688)
chr7 (1-78)||(25599178-25599256)
chr7 (1-78)||(45162128-45162205)
chr7 (73-233)||(43928736-43928882)
chr7 (73-233)||(45162253-45162399)
chr7 (73-233)||(29188337-29188483)
[»] chr2 (4 HSPs)
chr2 (73-233)||(33629058-33629216)
chr2 (1-78)||(33629264-33629341)
chr2 (1-78)||(23343981-23344058)
chr2 (73-233)||(23344106-23344251)
[»] chr6 (4 HSPs)
chr6 (1-78)||(19311158-19311235)
chr6 (181-233)||(1367382-1367434)
chr6 (192-233)||(19311394-19311435)
chr6 (73-140)||(19311283-19311344)
[»] chr4 (3 HSPs)
chr4 (1-78)||(24008528-24008605)
chr4 (73-233)||(24008653-24008799)
chr4 (73-115)||(52107552-52107594)
[»] chr8 (4 HSPs)
chr8 (8-74)||(25929254-25929320)
chr8 (8-40)||(26395226-26395258)
chr8 (8-75)||(42007669-42007735)
chr8 (80-116)||(26395131-26395167)
[»] chr3 (1 HSPs)
chr3 (22-74)||(13476362-13476414)
[»] chr1 (1 HSPs)
chr1 (22-74)||(4433249-4433301)


Alignment Details
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 73 - 233
Target Start/End: Original strand, 25599294 - 25599454
Alignment:
Q  73 ttaggtgttaaatgaaattccctctatgatctcttctcctacatgctaattgtaccaattcaaagccattcccaaacttgcagtgactttgttgagattt 172  Q
    |||| ||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  25599294 ttagttgttaaatgcaattccttctatgatatcttctcctacatgctaattgtaccaattcaaagccatttccaaactttcagtgactttgttgagattt 25599393  T
Q  173 cnnnnnnnattccataatcagaataaaattgtaatggagttttcccttctaccaaaaccat 233  Q
    |       ||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  25599394 ctttttttattccgtaatcagaataaaattgtaatggagttttccattctaccaaaaccat 25599454  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 29188531 - 29188608
Alignment:
Q  1 attcaactatggagtatttcaattttgcagacaagagaataaggagaattatgataggattatgtttccaatttaggt 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29188531 attcaactatggagtatttcaattttgcagacaagagaataaggagaattatgatatgattatgtttccaatttaggt 29188608  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 43928688 - 43928611
Alignment:
Q  1 attcaactatggagtatttcaattttgcagacaagagaataaggagaattatgataggattatgtttccaatttaggt 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43928688 attcaactatggagtatttcaattttgcagacaagagaataaggagaattatgataggattatgtttccaattgaggt 43928611  T

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Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 25599256 - 25599178
Alignment:
Q  1 attcaactatggagtatttcaa-ttttgcagacaagagaataaggagaattatgataggattatgtttccaatttaggt 78  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25599256 attcaactatggagtatttcaaattttgcagacaagagaataaggagaattatgataggattatgtttccaatttaggt 25599178  T

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Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 45162205 - 45162128
Alignment:
Q  1 attcaactatggagtatttcaattttgcagacaagagaataaggagaattatgataggattatgtttccaatttaggt 78  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45162205 attcaactatagaatatttcaattttgcagacaagagaataaggagaattatgataggattatgtttccaatttaggt 45162128  T

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Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 233
Target Start/End: Original strand, 43928736 - 43928882
Alignment:
Q  73 ttaggtgttaaatgaaattccctctatgatctcttctcctacatgctaattgtaccaattcaaagccattcccaaacttgcagtgactttgttgagattt 172  Q
    |||| ||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||              ||||||||||| ||||||||    
T  43928736 ttagttgttaaatgcaattcactctatgatctcttctcctacatactaattgtaccaattcaaagc--------------cagtgactttgctgagattt 43928821  T
Q  173 cnnnnnnnattccataatcagaataaaattgtaatggagttttcccttctaccaaaaccat 233  Q
    |       || || ||||||||||||||||||||||||||||||| |||||||||||||||    
T  43928822 ctttttttatgccgtaatcagaataaaattgtaatggagttttccattctaccaaaaccat 43928882  T

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Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 233
Target Start/End: Original strand, 45162253 - 45162399
Alignment:
Q  73 ttaggtgttaaatgaaattccctctatgatctcttctcctacatgctaattgtaccaattcaaagccattcccaaacttgcagtgactttgttgagattt 172  Q
    |||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||              ||||||||||| ||||||||    
T  45162253 ttagttgttaaatgcaattccctctatgatctcttctcctacatactaattgtaccaattcaaagc--------------cagtgactttgctgagattt 45162338  T
Q  173 cnnnnnnnattccataatcagaataaaattgtaatggagttttcccttctaccaaaaccat 233  Q
            || || ||||||||||||||||||||||||||||||| |||||||||||||||    
T  45162339 atttttttatgccgtaatcagaataaaattgtaatggagttttccattctaccaaaaccat 45162399  T

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Target: chr7; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 73 - 233
Target Start/End: Complemental strand, 29188483 - 29188337
Alignment:
Q  73 ttaggtgttaaatgaaattccctctatgatctcttctcctacatgctaattgtaccaattcaaagccattcccaaacttgcagtgactttgttgagattt 172  Q
    |||| ||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||              || |||||||| ||||||||    
T  29188483 ttagttgttaaatgcaatttcctctatgatctcttctcctacatactaattgtaccaattcaaagc--------------caatgactttgctgagattt 29188398  T
Q  173 cnnnnnnnattccataatcagaataaaattgtaatggagttttcccttctaccaaaaccat 233  Q
    |       || || ||||||||||||||||||||||||||||||| |||||||||||||||    
T  29188397 ctttttttatgccgtaatcagaataaaattgtaatggagttttccattctaccaaaaccat 29188337  T

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Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 73 - 233
Target Start/End: Complemental strand, 33629216 - 33629058
Alignment:
Q  73 ttaggtgttaaatgaaattccctctatgatctcttctcctacatgctaattgtaccaattcaaagccattcccaaacttgcagtgactttgttgagattt 172  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||     
T  33629216 ttagttgttaaatgaaattccctctatgatctcttgtcctacatgctaattg-accaattcaaagccattcccaaacttgcagtgactttgttg-gatta 33629119  T
Q  173 cnnnnnnnattccataatcagaataaaattgtaatggagttttcccttctaccaaaaccat 233  Q
    |       ||||| ||||||||||||||||||||||||||||||  |||||||||||||||    
T  33629118 ctttttttattccgtaatcagaataaaattgtaatggagttttctattctaccaaaaccat 33629058  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 33629264 - 33629341
Alignment:
Q  1 attcaactatggagtatttcaattttgcagacaagagaataaggagaattatgataggattatgtttccaatttaggt 78  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33629264 attcaactatggggtatttcaattttgcagacaagagaataaggagaattatgataggattatgtttccaatttaggt 33629341  T

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Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 23344058 - 23343981
Alignment:
Q  1 attcaactatggagtatttcaattttgcagacaagagaataaggagaattatgataggattatgtttccaatttaggt 78  Q
    ||||||||||  | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23344058 attcaactataaaatatttcaattttgcagacaagagaataaagagaattatgataggattatgtttccaatttaggt 23343981  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 233
Target Start/End: Original strand, 23344106 - 23344251
Alignment:
Q  73 ttaggtgttaaatgaaattccctctatgatctcttctcctacatgctaattgtaccaattcaaagccattcccaaacttgcagtgactttgttgagattt 172  Q
    |||| ||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||              ||||||||||| ||||||||    
T  23344106 ttagttgttaaatgcaatttcctctatgatctcttctcctacatactaattgtaccaattcaaagc--------------cagtgactttgctgagattt 23344191  T
Q  173 cnnnnnnnattccataatcagaataaaattgtaatggagttttcccttctaccaaaaccat 233  Q
    |       | | | ||||||||||||||||||||||||||||||| |||||||||||||||    
T  23344192 cttttttta-tgcgtaatcagaataaaattgtaatggagttttccattctaccaaaaccat 23344251  T

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Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 19311235 - 19311158
Alignment:
Q  1 attcaactatggagtatttcaattttgcagacaagagaataaggagaattatgataggattatgtttccaatttaggt 78  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19311235 attcaactatggagtatttcaattttgcagacaagagaataatgagaattatgataggattatgtttccaatttaggt 19311158  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 1367434 - 1367382
Alignment:
Q  181 attccataatcagaataaaattgtaatggagttttcccttctaccaaaaccat 233  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  1367434 attccgtaatcagaataaaattgtaatggagttttccattctaccaaaaccat 1367382  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 19311394 - 19311435
Alignment:
Q  192 agaataaaattgtaatggagttttcccttctaccaaaaccat 233  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  19311394 agaataaaattgtaatggagttttccattctaccaaaaccat 19311435  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 19311283 - 19311344
Alignment:
Q  73 ttaggtgttaaatgaaattccctctatgatctcttctcctacatgctaattgtaccaattcaaagcca 140  Q
    |||| ||||||||| ||||||||||||||      ||||||||| |||||||||||||||||||||||    
T  19311283 ttagttgttaaatgcaattccctctatga------ctcctacatactaattgtaccaattcaaagcca 19311344  T

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Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 24008605 - 24008528
Alignment:
Q  1 attcaactatggagtatttcaattttgcagacaagagaataaggagaattatgataggattatgtttccaatttaggt 78  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24008605 attcaactatgcagtatttcaattttgcagacaagagaataaggagaattatgataggattatgtttccaatttaggt 24008528  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 233
Target Start/End: Original strand, 24008653 - 24008799
Alignment:
Q  73 ttaggtgttaaatgaaattccctctatgatctcttctcctacatgctaattgtaccaattcaaagccattcccaaacttgcagtgactttgttgagattt 172  Q
    |||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||              || |||||||| ||||||||    
T  24008653 ttagttgttaaatgcaattccctctatgatctcttctcctacatactaattgtaccaattcaaagc--------------caatgactttgctgagattt 24008738  T
Q  173 cnnnnnnnattccataatcagaataaaattgtaatggagttttcccttctaccaaaaccat 233  Q
    |       || || ||||||||||||||||||||||||||||||| |||||||||||||||    
T  24008739 ctttttttatgccgtaatcagaataaaattgtaatggagttttccattctaccaaaaccat 24008799  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 52107594 - 52107552
Alignment:
Q  73 ttaggtgttaaatgaaattccctctatgatctcttctcctaca 115  Q
    |||| ||||||||| |||||||| |||||||||||||||||||    
T  52107594 ttagttgttaaatgcaattccctatatgatctcttctcctaca 52107552  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 25929254 - 25929320
Alignment:
Q  8 tatggagtatttcaattttgcagacaagagaataaggagaattatgataggattatgtttccaattt 74  Q
    |||||||||||| |||||||||||||| |||||||| |||||||||||| ||| |||||| ||||||    
T  25929254 tatggagtattttaattttgcagacaaaagaataagaagaattatgatatgatcatgttttcaattt 25929320  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 26395226 - 26395258
Alignment:
Q  8 tatggagtatttcaattttgcagacaagagaat 40  Q
    |||||||||||||||||||||||||||||||||    
T  26395226 tatggagtatttcaattttgcagacaagagaat 26395258  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 42007735 - 42007669
Alignment:
Q  8 tatggagtatttcaattttgcagacaagagaataaggagaattatgataggattatgtttccaattta 75  Q
    |||||||||||| | ||||||| || ||||||||| ||||||||||||| || || ||||||||||||    
T  42007735 tatggagtattttatttttgcaaaccagagaataaagagaattatgatacga-taagtttccaattta 42007669  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 26395167 - 26395131
Alignment:
Q  80 ttaaatgaaattccctctatgatctcttctcctacat 116  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  26395167 ttaaatgcaattctctctatgatctcttctcctacat 26395131  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 13476414 - 13476362
Alignment:
Q  22 attttgcagacaagagaataaggagaattatgataggattatgtttccaattt 74  Q
    ||||||||||||| |||||||||||||| | |||| ||| || ||||||||||    
T  13476414 attttgcagacaaaagaataaggagaatcaagatacgatcatctttccaattt 13476362  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 4433301 - 4433249
Alignment:
Q  22 attttgcagacaagagaataaggagaattatgataggattatgtttccaattt 74  Q
    ||||||||||||| |||||||||||||| | |||| ||| || ||||||||||    
T  4433301 attttgcagacaaaagaataaggagaatcaagatacgatcatctttccaattt 4433249  T

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