View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21382_low_24 (Length: 238)
Name: NF21382_low_24
Description: NF21382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21382_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 72 - 221
Target Start/End: Original strand, 1138868 - 1139017
Alignment:
| Q |
72 |
tgtagtaacactgttgcaatagattatcccaccaattttgaatatgcaactaaagcataccaaagaaggaaggtaaaattcgaagtcatatgttagcaac |
171 |
Q |
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| T |
1138868 |
tgtagtaacactgttgcaatagattatcccgccaatattgaatatgcaactaaagcatacctaagaaggaaggtaaaatttgaagtcatatgttagcaac |
1138967 |
T |
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| Q |
172 |
catattctttgcgtaaccttttattccatttcaatcatatgccacgtttt |
221 |
Q |
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| T |
1138968 |
catattttgtgcgtagccttttattccatttcaatcgtatgccacttttt |
1139017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 181
Target Start/End: Complemental strand, 48119173 - 48119125
Alignment:
| Q |
134 |
aagaaggaaggtaaaat-tcgaagtcatatgttagcaaccatattcttt |
181 |
Q |
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| T |
48119173 |
aagaaggaaggtaaaaagtcgaagtcatatgttagaagccatattcttt |
48119125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 181
Target Start/End: Complemental strand, 41475416 - 41475368
Alignment:
| Q |
134 |
aagaaggaaggtaaaat-tcgaagtcatatgttagcaaccatattcttt |
181 |
Q |
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|||||||||||||||| ||||||||||||||||| | ||||||||||| |
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| T |
41475416 |
aagaaggaaggtaaaaagtcgaagtcatatgttagaagccatattcttt |
41475368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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