View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21382_low_4 (Length: 483)
Name: NF21382_low_4
Description: NF21382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21382_low_4 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 35)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 139 - 468
Target Start/End: Original strand, 4613871 - 4614200
Alignment:
| Q |
139 |
ttatgcaaagagtttcttattgaatttaagtgatgatgtaaatgaactgatcttcagcaagagatcgtaaacttaaaataacgattcttgcttatcttga |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4613871 |
ttatgcaaagagtttcttattgaatttaagtgatgatgtaaatgaactgatcttcagcaagagatggtaaacttaaaataacgattcttgcttatcttga |
4613970 |
T |
|
| Q |
239 |
atggtttgaatatatgcacattggataattatatagcatgtatattaaccctacatctttaaatttgttaagttgggggaagtaagagtcctttcacagt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4613971 |
atggtttgaatatatgcacattggataattatatagcaggtatattaaccctacatctttaaatttgttaagttgggggaagtaagagtcctttcacagt |
4614070 |
T |
|
| Q |
339 |
atcttgaattccattatcatttgaaggattcattttgtcaaaaaataatttttcctatgtattccagttcaaatcaacattctccaatagcacataatac |
438 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4614071 |
atcttgaattccattatcatttgaatgattcattttgtcaaaaaataatttttcctatgtattccagttcaaatcaacattctccaatagcacataatac |
4614170 |
T |
|
| Q |
439 |
ttatagttttgttaaggacaagtaatttgt |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
4614171 |
ttatagttttgttaaggacaagtaatttgt |
4614200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 4613712 - 4613841
Alignment:
| Q |
1 |
gatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4613712 |
gatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcagaggaggacacgagaccaggaggttgttcatatatgaac |
4613811 |
T |
|
| Q |
101 |
ttggacaaagtgatcaatgaggtgctgctg |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
4613812 |
ttggacaaagtgatcaatgaggtgctgctg |
4613841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 4592369 - 4592241
Alignment:
| Q |
1 |
gatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
4592369 |
gatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcagaggagaacacgagacctggaggttgttcatatatgaac |
4592270 |
T |
|
| Q |
101 |
ttggacaaagtgatcaatgaggtgctgct |
129 |
Q |
| |
|
||||||||| ||||||| |||||| |||| |
|
|
| T |
4592269 |
ttggacaaattgatcaaggaggtgttgct |
4592241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 4579570 - 4579447
Alignment:
| Q |
1 |
gatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaac |
100 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| |||||| |
|
|
| T |
4579570 |
gatggtgggagagaaagcaaagaagatgaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaac |
4579471 |
T |
|
| Q |
101 |
ttggacaaagtgatcaatgaggtg |
124 |
Q |
| |
|
||||| |||||||| || |||||| |
|
|
| T |
4579470 |
ttggagaaagtgattaaggaggtg |
4579447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 4585774 - 4585652
Alignment:
| Q |
1 |
gatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaac |
100 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| || ||| |
|
|
| T |
4585774 |
gatggtgggagagaatggaaagaagatgaggcaaaaggcaatcgagttgaagaagaaggcggaggaggacacgagacctggaggttgttcatacataaac |
4585675 |
T |
|
| Q |
101 |
ttggacaaagtgatcaatgaggt |
123 |
Q |
| |
|
||||| |||||||| || ||||| |
|
|
| T |
4585674 |
ttggaaaaagtgattaaggaggt |
4585652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 4516458 - 4516331
Alignment:
| Q |
2 |
atggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaact |
101 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| || || |||||||||||||| ||||||||||| |||||||| |||||||||||| |||||| |
|
|
| T |
4516458 |
atggtgggagataaaggaaagaagatgaggcaaaaggccatggaattgaagaagaaggcagaggaggacacaagaccaggtggttgttcatatgtgaact |
4516359 |
T |
|
| Q |
102 |
tggacaaagtgatcaatgaggtgctgct |
129 |
Q |
| |
|
|||| |||||||| || ||||||||||| |
|
|
| T |
4516358 |
tggaaaaagtgattaaggaggtgctgct |
4516331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 156 - 384
Target Start/End: Complemental strand, 4563653 - 4563413
Alignment:
| Q |
156 |
tattgaatttaagtgatgatgtaaatgaactgatcttcagcaagagatcgtaaacttaaaataacgattcttgcttatcttgaatggtttgaatatatgc |
255 |
Q |
| |
|
|||||||||||||| |||||||| |||| | |||||||||||||| || | |||||||| || |||||||||| || || | || ||||||||||||| |
|
|
| T |
4563653 |
tattgaatttaagttctgatgtaagtgaagtcatcttcagcaagagttcctgaacttaaa-tagtgattcttgctaattttaagtgttttgaatatatgc |
4563555 |
T |
|
| Q |
256 |
acattggataattatatagcatgtatattaac--------------cctacatctttaaatttgttaagttgggggaagtaagagtcctttcacagtatc |
341 |
Q |
| |
|
| ||||||||||||||| |||||||||||||| |||||| ||||||| |||||||||||| ||| ||||| | ||||||||||||| |
|
|
| T |
4563554 |
atattggataattatatggcatgtatattaactttataatataaatcctacaagtttaaatatgttaagttgggtgaa-taagaattctttcacagtatc |
4563456 |
T |
|
| Q |
342 |
ttgaattccattatcatttgaaggattcattttgtcaaaaaat |
384 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
4563455 |
ttgaattccattatcatgtgaaggatccattttgtcaaaaaat |
4563413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 4504391 - 4504504
Alignment:
| Q |
1 |
gatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| |||| || ||||||||||| |||||| |
|
|
| T |
4504391 |
gatggtgggagagaaaggaaagaagatgaggcaaaaggccatggagttgaagaagaaggcagaggaggacacaagacttggtggttgttcatacatgaac |
4504490 |
T |
|
| Q |
101 |
ttggacaaagtgat |
114 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4504491 |
ttggacaaagtgat |
4504504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 8 - 123
Target Start/End: Complemental strand, 4563842 - 4563727
Alignment:
| Q |
8 |
ggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaacttggaca |
107 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||||| | |||||| |||||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
4563842 |
ggagagaaaggaaagaagatgcggcaaaaggcaattgagttgaagaagaaagtggaggaaaacacgagagctggaggttgttcatacatgaacttggaca |
4563743 |
T |
|
| Q |
108 |
aagtgatcaatgaggt |
123 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
4563742 |
aagtgatcaaggaggt |
4563727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 3 - 123
Target Start/End: Complemental strand, 4480829 - 4480709
Alignment:
| Q |
3 |
tggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaactt |
102 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||| || ||||||||||||| ||| ||||||||||| ||||| || ||||||||||| |||||||| |
|
|
| T |
4480829 |
tggtgggagagaaaggaaagaagatgaagcaaaaggccatggagttgaagaagatggcagaggaggacacaagacctggtggttgttcatacatgaactt |
4480730 |
T |
|
| Q |
103 |
ggacaaagtgatcaatgaggt |
123 |
Q |
| |
|
|||||||||||| || ||||| |
|
|
| T |
4480729 |
ggacaaagtgattaaggaggt |
4480709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 4490349 - 4490462
Alignment:
| Q |
1 |
gatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| | |||||||||||||| || ||| ||||||| |||||| |
|
|
| T |
4490349 |
gatggtgggagagaaaggaaagaagatgaggcaaaaggcgacggagttgaagaagaaggcagcggaggacacgagactcggtggtagttcatacatgaac |
4490448 |
T |
|
| Q |
101 |
ttggacaaagtgat |
114 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4490449 |
ttggacaaagtgat |
4490462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 7 - 124
Target Start/End: Complemental strand, 4598303 - 4598186
Alignment:
| Q |
7 |
gggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaacttggac |
106 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||||| |||||||||||||| |||||||| || |
|
|
| T |
4598303 |
gggagataaaggaaagaaaatgaggcaaaagacaattgatttgaagatgaaggcggaggaggaaacgagacttggaggttgttcatacatgaacttagag |
4598204 |
T |
|
| Q |
107 |
aaagtgatcaatgaggtg |
124 |
Q |
| |
|
|||||||| || |||||| |
|
|
| T |
4598203 |
aaagtgattaaggaggtg |
4598186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 4571110 - 4570988
Alignment:
| Q |
1 |
gatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaac |
100 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| |||| ||| ||| ||||||||||||||||||||||||||||||| || ||||||||||| |||||| |
|
|
| T |
4571110 |
gatggtgggagataaaggaaagaagatgaggaaaaatataatggagatgaagaagaaggcggaggaggacacgagacctggtggttgttcatacatgaac |
4571011 |
T |
|
| Q |
101 |
ttggacaaagtgatcaatgaggt |
123 |
Q |
| |
|
||||| |||||||| || ||||| |
|
|
| T |
4571010 |
ttggaaaaagtgattaaggaggt |
4570988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 129
Target Start/End: Complemental strand, 4560636 - 4560516
Alignment:
| Q |
9 |
gagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaacttggacaa |
108 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| || ||| ||||||| |||||||||| | |||||||||| |||||||||||||| ||||||||||| || |
|
|
| T |
4560636 |
gagataaaggaaagaagatgaggcaaaaggccatggagctgaagaaaaaggcggaggtgtacacgagacctggaggttgttcatacatgaacttggagaa |
4560537 |
T |
|
| Q |
109 |
agtgatcaatgaggtgctgct |
129 |
Q |
| |
|
|||||| || |||||| |||| |
|
|
| T |
4560536 |
agtgattaaggaggtgttgct |
4560516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 4617153 - 4617050
Alignment:
| Q |
8 |
ggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaacttggaca |
107 |
Q |
| |
|
||||| |||||||||||||||| ||||||||| || ||||||||||||||||| |||||| |||| |||||||| ||||||||||| ||||||||| ||| |
|
|
| T |
4617153 |
ggagataaaggaaagaaaatgaagcaaaaggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttgaaca |
4617054 |
T |
|
| Q |
108 |
aagt |
111 |
Q |
| |
|
|||| |
|
|
| T |
4617053 |
aagt |
4617050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 3171879 - 3171757
Alignment:
| Q |
1 |
gatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||| || ||||||||||||||||| |||||||| || ||| || ||||||||||| |||||| |
|
|
| T |
3171879 |
gatggtgggagagaaaggaaagaagatgaggcaaagggccatggagttgaagaagaaggcagaggaggatacaagatttggtggttgttcatacatgaac |
3171780 |
T |
|
| Q |
101 |
ttggacaaagtgatcaatgaggt |
123 |
Q |
| |
|
||||| |||||||| || ||||| |
|
|
| T |
3171779 |
ttggataaagtgattaaggaggt |
3171757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 4574439 - 4574318
Alignment:
| Q |
8 |
ggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaacttggaca |
107 |
Q |
| |
|
||||| ||||||||||| ||||||||||| || |||||| |||||||||||| ||||| |||||||||||| |||||||||||||| | |||||||| | |
|
|
| T |
4574439 |
ggagataaaggaaagaagatgaggcaaaaagccattgagctgaagaagaaggtggaggtggacacgagacctggaggttgttcatacacaaacttggaga |
4574340 |
T |
|
| Q |
108 |
aagtgatcaatgaggtgctgct |
129 |
Q |
| |
|
||||||| || |||||| |||| |
|
|
| T |
4574339 |
aagtgattaaggaggtgttgct |
4574318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 4557263 - 4557141
Alignment:
| Q |
1 |
gatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaac |
100 |
Q |
| |
|
||||| ||| |||||||||||||| ||| || ||||| ||||||| |||||| |||||||||||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
4557263 |
gatggagggggagaaaggaaagaagatgtggaaaaagataattgagatgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaat |
4557164 |
T |
|
| Q |
101 |
ttggacaaagtgatcaatgaggt |
123 |
Q |
| |
|
||||| |||||||| || ||||| |
|
|
| T |
4557163 |
ttggaaaaagtgattaaggaggt |
4557141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 4515115 - 4515243
Alignment:
| Q |
1 |
gatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaac |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||| || |||||||| |||||||| || |||||||| |||| || || | |||||| ||||| |
|
|
| T |
4515115 |
gatggtgggagagaaaggaaataaaatgaggaaaaaggttatggagttgaaaaagaaggcagacgaggacactagacttggcgggtcttcatacttgaac |
4515214 |
T |
|
| Q |
101 |
ttggacaaagtgatcaatgaggtgctgct |
129 |
Q |
| |
|
||||||||||||||||| |||||| |||| |
|
|
| T |
4515215 |
ttggacaaagtgatcaaggaggtgttgct |
4515243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 2 - 117
Target Start/End: Complemental strand, 4493092 - 4492977
Alignment:
| Q |
2 |
atggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaact |
101 |
Q |
| |
|
||||| |||||||||||||| || |||||| ||| || | |||||||| |||||||| ||||||||||| ||| || ||||||||||| ||||||| |
|
|
| T |
4493092 |
atggttggagagaaaggaaacaagatgaggagaaaagccacggagttgaaaaagaaggcagaggaggacacagtacctggtggttgttcatacatgaact |
4492993 |
T |
|
| Q |
102 |
tggacaaagtgatcaa |
117 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4492992 |
tggacaaagtgatcaa |
4492977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 4568193 - 4568078
Alignment:
| Q |
2 |
atggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaag---gcggaggaggacacgagaccaggaggttgttcatatatga |
98 |
Q |
| |
|
||||||||| |||||||||| || |||||||||||||| | ||||||||||||||| || ||| ||||||| ||||| || | || |||||| |||| |
|
|
| T |
4568193 |
atggtgggacagaaaggaaaaaagatgaggcaaaaggccgtggagttgaagaagaagaaggcagagaaggacacaagacctggtgattcttcatacatga |
4568094 |
T |
|
| Q |
99 |
acttggacaaagtgat |
114 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4568093 |
acttggacaaagtgat |
4568078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 4505994 - 4505867
Alignment:
| Q |
2 |
atggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaact |
101 |
Q |
| |
|
||||| |||||||||||||| || |||||| |||||| || |||||||| |||| ||| ||||||| || ||||| || |||||||||| ||||||| |
|
|
| T |
4505994 |
atggttggagagaaaggaaacaagatgaggaaaaaggtcatggagttgaaaaagagggcaaaggaggatacaagacctggtggttgttcattcatgaact |
4505895 |
T |
|
| Q |
102 |
tggacaaagtgatcaatgaggtgctgct |
129 |
Q |
| |
|
|||||||||| || || |||||| |||| |
|
|
| T |
4505894 |
tggacaaagttattaaggaggtgttgct |
4505867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 4461261 - 4461151
Alignment:
| Q |
1 |
gatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaac |
100 |
Q |
| |
|
|||||| ||||||| |||||||| ||||||||||||| || || || |||||||||| ||||||||| || ||||| |||||| |||||| | |||| |
|
|
| T |
4461261 |
gatggttggagagattggaaagaagatgaggcaaaaggtcatggaattcaagaagaaggtggaggaggataccagacctggaggtgtttcatacaagaac |
4461162 |
T |
|
| Q |
101 |
ttggacaaagt |
111 |
Q |
| |
|
||||||||||| |
|
|
| T |
4461161 |
ttggacaaagt |
4461151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 4469941 - 4469831
Alignment:
| Q |
1 |
gatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaac |
100 |
Q |
| |
|
|||||| |||||||| |||||||| |||||| ||||| || ||||| |||||||||| ||||||||| || ||||| |||||| |||||| | |||| |
|
|
| T |
4469941 |
gatggttggagagaatggaaagaagatgagggaaaagatcatggagttcaagaagaaggtggaggaggataccagacctggaggtgtttcatacaagaac |
4469842 |
T |
|
| Q |
101 |
ttggacaaagt |
111 |
Q |
| |
|
||||||||||| |
|
|
| T |
4469841 |
ttggacaaagt |
4469831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 4601920 - 4601799
Alignment:
| Q |
8 |
ggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaacttggaca |
107 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||| || ||||||||||||| ||| ||||| ||| |||| ||| ||||||||||| | |||| |||||| |
|
|
| T |
4601920 |
ggagataaaggcaagaagatgaggcaaaaggccatggagttgaagaagatggcaaaggagagcactagactaggtggttgttcatacaagaacctggaca |
4601821 |
T |
|
| Q |
108 |
aagtgatcaatgaggtgctgct |
129 |
Q |
| |
|
|||| || || |||||| |||| |
|
|
| T |
4601820 |
aagttattaaggaggtgttgct |
4601799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 4626082 - 4625970
Alignment:
| Q |
8 |
ggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaacttggaca |
107 |
Q |
| |
|
||||| || |||||||| |||||||||||||| || ||||||||||||||||| |||||| ||| || || || ||||||||||| ||||| |||| | |
|
|
| T |
4626082 |
ggagataacggaaagaagatgaggcaaaaggccatggagttgaagaagaaggcagaggagaacattagtcccggtggttgttcatacatgaatatggata |
4625983 |
T |
|
| Q |
108 |
aagtgatcaatga |
120 |
Q |
| |
|
|| |||| ||||| |
|
|
| T |
4625982 |
aactgattaatga |
4625970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 287
Target Start/End: Complemental strand, 4592118 - 4592067
Alignment:
| Q |
236 |
tgaatggtttgaatatatgcacattggataattatatagcatgtatattaac |
287 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
4592118 |
tgaatgttttgaatatatgcatattggataattatatggcatgtatattaac |
4592067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 4592173 - 4592118
Alignment:
| Q |
156 |
tattgaatttaagtgatgatgtaaatgaactgatcttcagcaagagatcgtaaact |
211 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||| || |||||| |
|
|
| T |
4592173 |
tattgaatttaagtgatgatgtaagtgaactcatcttcagcaagagttcctaaact |
4592118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 4267160 - 4267270
Alignment:
| Q |
1 |
gatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaac |
100 |
Q |
| |
|
||||||||||||||||||||| | |||| |||||| | | |||||||||| |||||| || ||| |||| ||||| || |||| |||||| |||||| |
|
|
| T |
4267160 |
gatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaggaaggcagaagagaacacaagacctggtggtttttcatacatgaac |
4267259 |
T |
|
| Q |
101 |
ttggacaaagt |
111 |
Q |
| |
|
||||||||||| |
|
|
| T |
4267260 |
ttggacaaagt |
4267270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 4260162 - 4260258
Alignment:
| Q |
15 |
aaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaacttggacaaagt |
111 |
Q |
| |
|
|||||||||| ||||||||||||| || |||||||||| |||||| |||||| |||| || ||| |||| ||||| ||||||||||||||||| |
|
|
| T |
4260162 |
aaggaaagaagatgaggcaaaaggtcatggagttgaagaggaaggcagaggagaacaccagtccatctggttattcattgatgaacttggacaaagt |
4260258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 4392052 - 4392142
Alignment:
| Q |
33 |
aaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaacttggacaaagtgatcaatgaggt |
123 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||||||| |||| || |||| ||||| ||||||||||||||| |||| || ||||| |
|
|
| T |
4392052 |
aaaaggcgatcgagttgaagaagaaggcaaaggaggacacatgacctggtggttcttcattcatgaacttggacaaactgattaaggaggt |
4392142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 4606941 - 4606998
Alignment:
| Q |
57 |
aggcggaggaggacacgagaccaggaggttgttcatatatgaacttggacaaagtgat |
114 |
Q |
| |
|
||||||||| ||||| ||||||||| |||| |||||| ||||||||||| |||||||| |
|
|
| T |
4606941 |
aggcggagggggacaagagaccaggtggtttttcatacatgaacttggaaaaagtgat |
4606998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 4256612 - 4256716
Alignment:
| Q |
7 |
gggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaacttggac |
106 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||| || || |||||||||||| | ||| || |||| || |||| ||| ||||| |||||||||||| |
|
|
| T |
4256612 |
gggagaaaaaggaaagaagatgaggcaaaaggtcatggaattgaagaagaagacagagaagaacaccagcccagctggtcattcattgatgaacttggac |
4256711 |
T |
|
| Q |
107 |
aaagt |
111 |
Q |
| |
|
||||| |
|
|
| T |
4256712 |
aaagt |
4256716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 111
Target Start/End: Complemental strand, 4622274 - 4622170
Alignment:
| Q |
7 |
gggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaacttggac |
106 |
Q |
| |
|
|||||| ||||||||||| ||||| |||||||| || ||||||||| ||||||| || ||| || || || || ||||||||||| | ||||||||| |
|
|
| T |
4622274 |
gggagataaaggaaagaagatgagacaaaaggccatggagttgaaggagaaggcagatgagacgaccagccctggtggttgttcatacaacaacttggac |
4622175 |
T |
|
| Q |
107 |
aaagt |
111 |
Q |
| |
|
||||| |
|
|
| T |
4622174 |
aaagt |
4622170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 367
Target Start/End: Complemental strand, 4585361 - 4585327
Alignment:
| Q |
333 |
cacagtatcttgaattccattatcatttgaaggat |
367 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
4585361 |
cacagtatcttgaattccattatcatatgaaggat |
4585327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 20863837 - 20863965
Alignment:
| Q |
1 |
gatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaac |
100 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||| ||| |||||||||||||||||| ||||||||||| ||||| | |||| |||||||||||||| |
|
|
| T |
20863837 |
gatggtgggagagaaaggaaggaggatgaggcaaaagacaaatgagttgaagaagaaggcagaggaggacacaagaccggaaggtggttcatatatgaac |
20863936 |
T |
|
| Q |
101 |
ttggacaaagtgatcaatgaggtgctgct |
129 |
Q |
| |
|
|||||||||||||| || |||||| |||| |
|
|
| T |
20863937 |
ttggacaaagtgattaaggaggtgttgct |
20863965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 1674364 - 1674251
Alignment:
| Q |
1 |
gatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaac |
100 |
Q |
| |
|
||||||||||||||| ||||| || |||||||||||||| || || |||||||||||||| |||||| |||| |||||||| ||||||||||| |||||| |
|
|
| T |
1674364 |
gatggtgggagagaatggaaaaaagatgaggcaaaaggccatggaattgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaac |
1674265 |
T |
|
| Q |
101 |
ttggacaaagtgat |
114 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
1674264 |
ttggacaaagtgat |
1674251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 16686261 - 16686374
Alignment:
| Q |
1 |
gatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||| |||||| || | | ||||| ||| || ||| ||||||| || ||||||||||| |||||| |
|
|
| T |
16686261 |
gatggtgggagagaaaggaaagaagatgaggaaaaagataattgaactgcaaatgaaggtggacgaagacccgagacctggtggttgttcatacatgaac |
16686360 |
T |
|
| Q |
101 |
ttggacaaagtgat |
114 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
16686361 |
ttggaaaaagtgat |
16686374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 28000093 - 28000206
Alignment:
| Q |
1 |
gatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaac |
100 |
Q |
| |
|
||||||||||||||| ||||| || |||||||||||||| || ||||||||||| ||||| |||||| |||| |||||||| ||||||||||| |||||| |
|
|
| T |
28000093 |
gatggtgggagagaatggaaaaaagatgaggcaaaaggccatggagttgaagaaaaaggcagaggagaacactagaccaggtggttgttcatacatgaac |
28000192 |
T |
|
| Q |
101 |
ttggacaaagtgat |
114 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
28000193 |
ttggacaaagtgat |
28000206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 24103137 - 24103027
Alignment:
| Q |
1 |
gatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaac |
100 |
Q |
| |
|
||||||||||||||| ||||||| |||| |||||||| | ||||| ||||||||||| || ||| |||| ||| | || |||| |||||| |||||| |
|
|
| T |
24103137 |
gatggtgggagagaacggaaagacgatgaagcaaaaggtcttggagttcaagaagaaggcagaagagaacacaagatctggtggtttttcatacatgaac |
24103038 |
T |
|
| Q |
101 |
ttggacaaagt |
111 |
Q |
| |
|
||||||||||| |
|
|
| T |
24103037 |
ttggacaaagt |
24103027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 3716 - 3823
Alignment:
| Q |
4 |
ggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaacttg |
103 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| | ||||| ||||||||||| |||||| |||| |||||||| ||| ||||||| |||||| || |
|
|
| T |
3716 |
ggtgggagagaaaggaaagaagatgaggcaaaaggccgtggagttaaagaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctg |
3815 |
T |
|
| Q |
104 |
gacaaagt |
111 |
Q |
| |
|
|||||||| |
|
|
| T |
3816 |
gacaaagt |
3823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 4686 - 4802
Alignment:
| Q |
7 |
gggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaacttggac |
106 |
Q |
| |
|
|||||| ||||||| ||| |||||||||||||| || ||||||||||||||||| |||||| |||| || | || || |||||||| |||||||||||| |
|
|
| T |
4686 |
gggagataaaggaatgaagatgaggcaaaaggccatggagttgaagaagaaggcagaggagaacaccagttctggtggctgttcatacatgaacttggac |
4785 |
T |
|
| Q |
107 |
aaagtgatcaatgaggt |
123 |
Q |
| |
|
|||||||| || ||||| |
|
|
| T |
4786 |
aaagtgattaaggaggt |
4802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 1281238 - 1281139
Alignment:
| Q |
15 |
aaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcggaggaggacacgagaccaggaggttgttcatatatgaacttggacaaagtgat |
114 |
Q |
| |
|
|||||||||| ||||| ||||||| || || ||||||||| |||||||||| |||| ||||| || ||||||||||| |||||||| ||||||||||| |
|
|
| T |
1281238 |
aaggaaagaatatgagagaaaaggccatggaattgaagaaggcggcggaggagaacactagaccgggtggttgttcatacatgaacttcgacaaagtgat |
1281139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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